Wall clock time and date at job start Tue Mar 31 2020 11:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35960 * 116.99699 * 2 1 4 4 C 1.38416 * 120.12417 * 359.97237 * 3 2 1 5 5 C 1.38670 * 120.37086 * 179.78484 * 4 3 2 6 6 C 1.37668 * 120.55186 * 0.50853 * 5 4 3 7 7 C 1.39837 * 119.87359 * 359.47281 * 6 5 4 8 8 N 1.35835 * 133.38175 * 180.27824 * 7 6 5 9 9 C 1.30861 * 109.65205 * 180.02562 * 8 7 6 10 10 N 1.38488 * 125.05600 * 179.97438 * 9 8 7 11 11 C 1.34771 * 120.00211 * 180.02562 * 10 9 8 12 12 O 1.21271 * 119.99448 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00184 * 180.02562 * 11 10 9 14 14 C 1.53006 * 109.46942 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46753 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.46753 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46944 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00251 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00156 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99758 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00301 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46923 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46948 * 120.00261 * 21 19 17 24 24 H 1.48497 * 109.47021 * 240.00725 * 21 19 17 25 25 N 1.36436 * 109.88767 * 0.02562 * 9 8 7 26 26 H 0.96994 * 126.39171 * 179.97438 * 25 9 8 27 27 C 1.38573 * 107.21842 * 359.97438 * 25 9 8 28 28 H 1.09005 * 109.47123 * 300.00048 * 1 2 3 29 29 H 1.08995 * 109.46640 * 60.00201 * 1 2 3 30 30 H 1.09001 * 109.46971 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.81190 * 0.03051 * 4 3 2 32 32 H 1.07998 * 119.72550 * 180.28273 * 5 4 3 33 33 H 1.08002 * 120.06653 * 179.75805 * 6 5 4 34 34 H 0.97000 * 119.99550 * 0.06371 * 10 9 8 35 35 H 1.08993 * 109.46786 * 299.99729 * 13 11 10 36 36 H 1.08992 * 109.47249 * 60.00270 * 13 11 10 37 37 H 1.09002 * 109.47207 * 300.00032 * 14 13 11 38 38 H 1.09000 * 109.46912 * 60.00264 * 14 13 11 39 39 H 1.09002 * 109.47310 * 299.99993 * 15 14 13 40 40 H 1.08992 * 109.47323 * 60.00174 * 15 14 13 41 41 H 1.08997 * 109.46772 * 299.99895 * 16 15 14 42 42 H 1.09000 * 109.46912 * 60.00289 * 16 15 14 43 43 H 0.96996 * 119.99618 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2949 2.3739 -0.0006 5 6 1.9190 3.6122 0.0039 6 6 3.2926 3.7035 -0.0015 7 6 4.0681 2.5398 -0.0005 8 7 5.4070 2.3108 0.0001 9 6 5.6330 1.0219 0.0005 10 7 6.8870 0.4342 0.0006 11 6 7.0020 -0.9086 0.0005 12 8 6.0073 -1.6022 -0.0002 13 6 8.3666 -1.5480 0.0012 14 6 8.2163 -3.0707 0.0002 15 6 9.6017 -3.7199 0.0003 16 6 9.4514 -5.2425 0.0000 17 6 10.8160 -5.8820 -0.0006 18 1 11.7019 -5.2642 -0.0003 19 6 10.9336 -7.2557 -0.0004 20 7 9.8548 -8.0080 -0.0002 21 14 12.6250 -8.0484 -0.0003 22 1 13.6674 -6.9906 0.0001 23 1 12.7762 -8.8922 1.2122 24 1 12.7762 -8.8924 -1.2128 25 7 4.4495 0.3431 -0.0004 26 1 4.3387 -0.6205 -0.0007 27 6 3.4352 1.2872 -0.0008 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2164 2.3161 -0.0005 32 1 1.3225 4.5125 0.0080 33 1 3.7706 4.6720 -0.0019 34 1 7.6826 0.9891 0.0013 35 1 8.9141 -1.2368 -0.8884 36 1 8.9131 -1.2371 0.8915 37 1 7.6685 -3.3823 0.8896 38 1 7.6699 -3.3813 -0.8904 39 1 10.1491 -3.4082 -0.8893 40 1 10.1484 -3.4093 0.8906 41 1 8.9042 -5.5537 0.8899 42 1 8.9045 -5.5534 -0.8901 43 1 9.9376 -8.9745 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831537208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:19 Heat of formation + Delta-G solvation = -15.900423 kcal Electronic energy + Delta-G solvation = -24852.703389 eV Core-core repulsion = 21091.553831 eV Total energy + Delta-G solvation = -3761.149558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.53881 -40.40257 -39.40098 -36.77533 -35.13919 -35.02136 -32.96709 -32.72432 -30.27969 -29.69903 -29.11327 -27.45504 -25.98191 -23.63883 -22.85607 -22.05794 -21.52101 -20.74724 -20.12730 -18.83735 -18.16471 -17.54605 -16.79204 -16.55543 -16.23873 -16.09342 -15.97669 -15.58135 -15.25313 -14.77898 -14.53489 -14.29719 -14.20551 -13.78597 -12.87377 -12.74159 -12.67986 -12.35904 -12.11582 -11.87454 -11.72821 -11.62238 -11.54199 -11.08689 -11.05290 -10.68051 -10.63048 -10.53651 -10.46953 -10.41142 -10.26096 -9.71410 -9.33972 -9.05260 -8.35818 -8.30633 -7.96789 -6.00352 -4.03050 0.69657 1.23484 1.87687 1.97114 2.76865 2.86631 2.93147 3.30088 3.37570 3.41188 3.59561 4.22689 4.33419 4.45317 4.56481 4.67076 4.81279 4.82469 4.85468 5.04043 5.10486 5.14835 5.17276 5.35353 5.40743 5.44425 5.54721 5.64105 5.86631 5.96294 6.10400 6.17971 6.19012 6.35529 6.38715 6.67003 6.69446 6.87454 7.00793 7.10396 7.25112 7.53013 7.65435 7.67907 7.81842 8.00113 8.41689 9.04750 9.61105 11.10957 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026435 B = 0.001959 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.940290 B =14286.271428 C =15308.857954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.149 3.851 4 C -0.211 4.211 5 C -0.083 4.083 6 C -0.112 4.112 7 C 0.108 3.892 8 N -0.523 5.523 9 C 0.519 3.481 10 N -0.635 5.635 11 C 0.523 3.477 12 O -0.518 6.518 13 C -0.132 4.132 14 C -0.106 4.106 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.521 4.521 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 N -0.578 5.578 26 H 0.439 0.561 27 C 0.018 3.982 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.436 0.564 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.992 24.431 0.008 29.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.101 3.899 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.133 4.133 7 C -0.013 4.013 8 N -0.252 5.252 9 C 0.164 3.836 10 N -0.288 5.288 11 C 0.313 3.687 12 O -0.390 6.390 13 C -0.172 4.172 14 C -0.144 4.144 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.559 4.559 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 N -0.201 5.201 26 H 0.288 0.712 27 C -0.092 4.092 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.276 0.724 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.004 24.072 0.008 29.472 hybrid contribution 0.424 -1.247 0.002 1.317 sum -16.581 22.824 0.009 28.211 Atomic orbital electron populations 1.23078 0.77852 1.04161 1.01484 1.86100 1.21893 1.26690 1.88755 1.17818 0.87698 0.85306 0.99083 1.20859 0.99640 0.91246 1.11455 1.20613 0.93613 0.96927 0.99165 1.20094 0.92351 0.96014 1.04793 1.18662 0.88278 0.91992 1.02333 1.70600 1.15148 1.10065 1.29428 1.19496 0.81112 0.86475 0.96566 1.42954 1.04884 1.08069 1.72932 1.21756 0.93948 0.79667 0.73371 1.90530 1.39450 1.61568 1.47470 1.21863 0.90906 0.99080 1.05337 1.21533 1.00065 0.89510 1.03302 1.21655 0.93293 0.99490 1.00374 1.19101 0.97012 0.88308 0.97353 1.21303 0.92748 0.91413 1.50443 0.92635 1.25051 0.96577 0.97592 0.95405 1.69981 1.27827 1.04710 1.50905 0.86545 0.84542 0.79384 0.77572 1.19747 1.21041 1.21035 1.43465 1.03145 1.11133 1.62404 0.71223 1.18075 0.87776 0.90255 1.13070 0.92419 0.92412 0.88129 0.84798 0.85031 0.85051 0.72428 0.87764 0.87760 0.91482 0.91487 0.93210 0.93217 0.96563 0.96566 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.59 10.50 -19.61 -0.21 -3.79 16 3 C 0.15 1.72 6.69 -39.20 -0.26 1.46 16 4 C -0.21 -1.87 9.04 -39.36 -0.36 -2.22 16 5 C -0.08 -0.68 10.01 -39.63 -0.40 -1.07 16 6 C -0.11 -1.14 10.10 -39.19 -0.40 -1.53 16 7 C 0.11 1.41 7.22 -84.71 -0.61 0.80 16 8 N -0.52 -7.07 11.31 -11.43 -0.13 -7.20 16 9 C 0.52 6.77 8.71 -319.48 -2.78 3.99 16 10 N -0.64 -6.47 5.38 -12.60 -0.07 -6.54 16 11 C 0.52 6.24 7.79 -10.99 -0.09 6.16 16 12 O -0.52 -7.92 13.39 5.57 0.07 -7.85 16 13 C -0.13 -1.42 5.70 -27.88 -0.16 -1.58 16 14 C -0.11 -1.68 4.50 -26.73 -0.12 -1.80 16 15 C -0.11 -2.11 5.15 -26.73 -0.14 -2.24 16 16 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 17 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 21 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 N -0.58 -8.00 5.84 -11.00 -0.06 -8.07 16 26 H 0.44 6.33 6.34 -40.82 -0.26 6.07 16 27 C 0.02 0.24 7.24 -83.71 -0.61 -0.36 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.13 0.81 6.28 -52.49 -0.33 0.48 16 32 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.44 2.96 8.82 -40.82 -0.36 2.60 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 38 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -34.88 364.20 -10.59 -45.47 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.93 Total: 2.62 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -5.47 Total: -10.35 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.47 Total: -48.14 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.13 Total: -11.64 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.88 -10.59 -45.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831537208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.569 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds