Wall clock time and date at job start Tue Mar 31 2020 11:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35960 * 116.99699 * 2 1 4 4 C 1.38416 * 120.12417 * 359.97237 * 3 2 1 5 5 C 1.38670 * 120.37086 * 179.78484 * 4 3 2 6 6 C 1.37668 * 120.55186 * 0.50853 * 5 4 3 7 7 C 1.39837 * 119.87359 * 359.47281 * 6 5 4 8 8 N 1.35835 * 133.38175 * 180.27824 * 7 6 5 9 9 C 1.30861 * 109.65205 * 180.02562 * 8 7 6 10 10 N 1.38488 * 125.05600 * 179.97438 * 9 8 7 11 11 C 1.34771 * 120.00211 * 180.02562 * 10 9 8 12 12 O 1.21271 * 119.99448 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00184 * 180.02562 * 11 10 9 14 14 C 1.53006 * 109.46942 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46753 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.46753 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46944 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00251 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00156 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99758 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00301 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46923 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46948 * 120.00261 * 21 19 17 24 24 H 1.48497 * 109.47021 * 240.00725 * 21 19 17 25 25 N 1.36436 * 109.88767 * 0.02562 * 9 8 7 26 26 H 0.96994 * 126.39171 * 179.97438 * 25 9 8 27 27 C 1.38573 * 107.21842 * 359.97438 * 25 9 8 28 28 H 1.09005 * 109.47123 * 300.00048 * 1 2 3 29 29 H 1.08995 * 109.46640 * 60.00201 * 1 2 3 30 30 H 1.09001 * 109.46971 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.81190 * 0.03051 * 4 3 2 32 32 H 1.07998 * 119.72550 * 180.28273 * 5 4 3 33 33 H 1.08002 * 120.06653 * 179.75805 * 6 5 4 34 34 H 0.97000 * 119.99550 * 0.06371 * 10 9 8 35 35 H 1.08993 * 109.46786 * 299.99729 * 13 11 10 36 36 H 1.08992 * 109.47249 * 60.00270 * 13 11 10 37 37 H 1.09002 * 109.47207 * 300.00032 * 14 13 11 38 38 H 1.09000 * 109.46912 * 60.00264 * 14 13 11 39 39 H 1.09002 * 109.47310 * 299.99993 * 15 14 13 40 40 H 1.08992 * 109.47323 * 60.00174 * 15 14 13 41 41 H 1.08997 * 109.46772 * 299.99895 * 16 15 14 42 42 H 1.09000 * 109.46912 * 60.00289 * 16 15 14 43 43 H 0.96996 * 119.99618 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2949 2.3739 -0.0006 5 6 1.9190 3.6122 0.0039 6 6 3.2926 3.7035 -0.0015 7 6 4.0681 2.5398 -0.0005 8 7 5.4070 2.3108 0.0001 9 6 5.6330 1.0219 0.0005 10 7 6.8870 0.4342 0.0006 11 6 7.0020 -0.9086 0.0005 12 8 6.0073 -1.6022 -0.0002 13 6 8.3666 -1.5480 0.0012 14 6 8.2163 -3.0707 0.0002 15 6 9.6017 -3.7199 0.0003 16 6 9.4514 -5.2425 0.0000 17 6 10.8160 -5.8820 -0.0006 18 1 11.7019 -5.2642 -0.0003 19 6 10.9336 -7.2557 -0.0004 20 7 9.8548 -8.0080 -0.0002 21 14 12.6250 -8.0484 -0.0003 22 1 13.6674 -6.9906 0.0001 23 1 12.7762 -8.8922 1.2122 24 1 12.7762 -8.8924 -1.2128 25 7 4.4495 0.3431 -0.0004 26 1 4.3387 -0.6205 -0.0007 27 6 3.4352 1.2872 -0.0008 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2164 2.3161 -0.0005 32 1 1.3225 4.5125 0.0080 33 1 3.7706 4.6720 -0.0019 34 1 7.6826 0.9891 0.0013 35 1 8.9141 -1.2368 -0.8884 36 1 8.9131 -1.2371 0.8915 37 1 7.6685 -3.3823 0.8896 38 1 7.6699 -3.3813 -0.8904 39 1 10.1491 -3.4082 -0.8893 40 1 10.1484 -3.4093 0.8906 41 1 8.9042 -5.5537 0.8899 42 1 8.9045 -5.5534 -0.8901 43 1 9.9376 -8.9745 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831537208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:18 Heat of formation + Delta-G solvation = -37.351958 kcal Electronic energy + Delta-G solvation = -24853.633597 eV Core-core repulsion = 21091.553831 eV Total energy + Delta-G solvation = -3762.079766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.42215 -41.32322 -40.18652 -37.57558 -36.68364 -35.94386 -34.65401 -33.85308 -31.74365 -30.52932 -30.01644 -28.17356 -27.52607 -25.02929 -23.67276 -23.30392 -22.43616 -21.85980 -21.54862 -19.70791 -18.96233 -18.52998 -18.30266 -17.66486 -17.48762 -16.89382 -16.75977 -16.51400 -16.38793 -16.23237 -15.56713 -15.48195 -15.28331 -14.57165 -14.51162 -13.92815 -13.64264 -13.45820 -13.33742 -13.23952 -12.86718 -12.81443 -12.33294 -12.26291 -12.23172 -12.19163 -12.18818 -11.94024 -11.59124 -11.38664 -11.37292 -11.27854 -11.07731 -11.02462 -10.55813 -9.17171 -8.75600 -8.19434 -6.30924 -0.13700 0.45012 0.97157 1.09981 1.40551 1.40824 1.54299 1.86145 1.97050 2.25981 2.41391 2.80093 3.13821 3.36191 3.43765 3.91281 3.95610 3.98012 4.08052 4.12046 4.32573 4.39094 4.46199 4.52837 4.61683 4.66104 4.66814 4.73882 4.80129 4.81144 4.86337 5.14901 5.16809 5.32728 5.37554 5.43432 5.48331 5.57548 5.61111 5.79054 5.88958 5.90264 6.25362 6.26372 6.33073 6.62089 6.78091 6.88474 7.38852 8.92836 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026435 B = 0.001959 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.940290 B =14286.271428 C =15308.857954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.349 6.349 3 C 0.127 3.873 4 C -0.200 4.200 5 C -0.070 4.070 6 C -0.122 4.122 7 C 0.081 3.919 8 N -0.533 5.533 9 C 0.504 3.496 10 N -0.616 5.616 11 C 0.526 3.474 12 O -0.558 6.558 13 C -0.118 4.118 14 C -0.099 4.099 15 C -0.097 4.097 16 C 0.017 3.983 17 C -0.539 4.539 18 H 0.067 0.933 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.968 3.032 22 H -0.257 1.257 23 H -0.280 1.280 24 H -0.280 1.280 25 N -0.589 5.589 26 H 0.433 0.567 27 C -0.011 4.011 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.148 0.852 34 H 0.451 0.549 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.064 0.936 41 H -0.015 1.015 42 H -0.015 1.015 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.558 26.968 0.010 31.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.263 6.263 3 C 0.080 3.920 4 C -0.221 4.221 5 C -0.091 4.091 6 C -0.142 4.142 7 C -0.039 4.039 8 N -0.263 5.263 9 C 0.148 3.852 10 N -0.271 5.271 11 C 0.317 3.683 12 O -0.433 6.433 13 C -0.157 4.157 14 C -0.138 4.138 15 C -0.134 4.134 16 C -0.020 4.020 17 C -0.577 4.577 18 H 0.085 0.915 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.792 3.208 22 H -0.180 1.180 23 H -0.206 1.206 24 H -0.206 1.206 25 N -0.212 5.212 26 H 0.279 0.721 27 C -0.120 4.120 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.128 0.872 31 H 0.183 0.817 32 H 0.190 0.810 33 H 0.166 0.834 34 H 0.295 0.705 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.556 26.675 0.010 31.395 hybrid contribution 0.119 -2.005 0.001 2.009 sum -16.437 24.669 0.011 29.644 Atomic orbital electron populations 1.23379 0.75668 1.05455 1.02958 1.86065 1.24286 1.27033 1.88927 1.18132 0.87453 0.86400 1.00030 1.21319 1.01112 0.90489 1.09149 1.21103 0.93113 0.98150 0.96685 1.20463 0.93215 0.95796 1.04730 1.19144 0.88308 0.92958 1.03482 1.70558 1.15775 1.10147 1.29828 1.19771 0.81682 0.86601 0.97103 1.42755 1.04705 1.07613 1.72010 1.21925 0.93841 0.79932 0.72610 1.90534 1.40758 1.62590 1.49418 1.21746 0.90636 0.94861 1.08473 1.21306 0.97559 0.93288 1.01604 1.21445 0.95465 0.94782 1.01715 1.19075 0.95430 0.93161 0.94371 1.21804 0.93965 0.92075 1.49849 0.91470 1.26085 1.01008 0.98494 0.94946 1.70134 1.30550 1.05087 1.52092 0.85357 0.79368 0.78482 0.77580 1.18019 1.20627 1.20616 1.43526 1.03825 1.10903 1.62990 0.72052 1.18536 0.88772 0.90407 1.14306 0.90850 0.90845 0.87153 0.81670 0.81049 0.83419 0.70492 0.84548 0.84541 0.93350 0.93355 0.91731 0.91741 0.99662 0.99667 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.35 -7.89 10.50 -93.10 -0.98 -8.87 16 3 C 0.13 2.93 6.69 22.52 0.15 3.08 16 4 C -0.20 -3.09 9.04 22.42 0.20 -2.88 16 5 C -0.07 -0.95 10.01 22.24 0.22 -0.73 16 6 C -0.12 -2.29 10.10 22.52 0.23 -2.06 16 7 C 0.08 2.11 7.22 39.42 0.28 2.40 16 8 N -0.53 -14.51 11.31 -190.09 -2.15 -16.66 16 9 C 0.50 13.42 8.71 260.32 2.27 15.68 16 10 N -0.62 -12.18 5.38 -312.18 -1.68 -13.86 16 11 C 0.53 12.37 7.79 87.66 0.68 13.05 16 12 O -0.56 -17.81 13.39 -3.00 -0.04 -17.85 16 13 C -0.12 -2.30 5.70 29.85 0.17 -2.13 16 14 C -0.10 -3.15 4.50 30.60 0.14 -3.01 16 15 C -0.10 -3.63 5.15 30.60 0.16 -3.47 16 16 C 0.02 0.89 4.97 29.85 0.15 1.04 16 17 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 19 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 20 N -0.94 -58.34 13.29 21.45 0.28 -58.06 16 21 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 N -0.59 -17.21 5.84 -188.72 -1.10 -18.31 16 26 H 0.43 13.48 6.34 -92.71 -0.59 12.89 16 27 C -0.01 -0.31 7.24 38.79 0.28 -0.03 16 28 H 0.07 0.60 7.66 -2.38 -0.02 0.58 16 29 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.17 1.40 6.28 -2.91 -0.02 1.38 16 32 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 33 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.45 5.41 8.82 -92.71 -0.82 4.60 16 35 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 38 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 41 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 42 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 43 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -80.25 364.20 2.75 -77.50 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -0.35 Total: 17.81 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 6.74 Total: -8.03 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -4.65 Total: -106.89 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -1.02 Total: -26.72 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -80.25 2.75 -77.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831537208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.147 kcal (2) G-P(sol) polarization free energy of solvation -80.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds