Wall clock time and date at job start Tue Mar 31 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35329 * 116.99675 * 2 1 4 4 N 1.32467 * 118.99274 * 180.02562 * 3 2 1 5 5 C 1.32001 * 120.94813 * 179.97438 * 4 3 2 6 6 C 1.40291 * 118.95201 * 0.02562 * 5 4 3 7 7 C 1.47049 * 120.91014 * 179.97438 * 6 5 4 8 8 C 1.34947 * 119.99482 * 43.34965 * 7 6 5 9 9 C 1.46276 * 120.00258 * 10.00366 * 8 7 6 10 10 O 1.21720 * 119.99678 * 6.56845 * 9 8 7 11 11 N 1.34774 * 120.00132 * 186.57055 * 9 8 7 12 12 C 1.46923 * 120.63253 * 354.49353 * 11 9 8 13 13 C 1.53189 * 108.77547 * 233.58904 * 12 11 9 14 14 C 1.53043 * 109.30893 * 305.35913 * 13 12 11 15 15 C 1.53035 * 109.53726 * 61.36987 * 14 13 12 16 16 H 1.08998 * 109.49774 * 58.61639 * 15 14 13 17 17 C 1.50704 * 109.49683 * 178.68131 * 15 14 13 18 18 H 1.07995 * 120.00264 * 359.97438 * 17 15 14 19 19 C 1.37879 * 119.99760 * 180.02562 * 17 15 14 20 20 N 1.31509 * 120.00446 * 359.97438 * 19 17 15 21 21 Si 1.86808 * 119.99733 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46869 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46915 * 119.99443 * 21 19 17 24 24 H 1.48494 * 109.46849 * 239.99404 * 21 19 17 25 25 C 1.46928 * 120.63134 * 174.20949 * 11 9 8 26 26 C 1.40297 * 118.18493 * 0.27140 * 6 5 4 27 27 N 1.32011 * 118.95146 * 359.44508 * 26 6 5 28 28 H 1.09004 * 109.46966 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47119 * 299.99573 * 1 2 3 30 30 H 1.08993 * 109.47481 * 60.00190 * 1 2 3 31 31 H 1.07997 * 120.52430 * 179.97438 * 5 4 3 32 32 H 1.07992 * 120.00703 * 223.34213 * 7 6 5 33 33 H 1.08000 * 119.99710 * 190.01321 * 8 7 6 34 34 H 1.09002 * 109.58396 * 353.37121 * 12 11 9 35 35 H 1.09002 * 109.58885 * 113.65330 * 12 11 9 36 36 H 1.08995 * 109.50115 * 65.31398 * 13 12 11 37 37 H 1.09003 * 109.49924 * 185.40864 * 13 12 11 38 38 H 1.09005 * 109.45675 * 181.39093 * 14 13 12 39 39 H 1.08997 * 109.46161 * 301.34137 * 14 13 12 40 40 H 0.96998 * 120.00359 * 180.02562 * 20 19 17 41 41 H 1.08995 * 109.58742 * 246.20272 * 25 11 9 42 42 H 1.09000 * 109.58297 * 6.62912 * 25 11 9 43 43 H 1.08000 * 120.52339 * 179.72635 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2058 0.0000 4 7 3.3671 1.2520 -0.0005 5 6 4.0061 2.4070 -0.0010 6 6 3.2607 3.5955 -0.0005 7 6 3.9282 4.9058 -0.0005 8 6 4.9913 5.1213 -0.8031 9 6 5.3465 4.1383 -1.8265 10 8 4.6171 3.1864 -2.0351 11 7 6.4813 4.2865 -2.5383 12 6 7.3101 5.4897 -2.3838 13 6 7.5407 6.1102 -3.7653 14 6 8.1334 5.0547 -4.7017 15 6 7.1485 3.8931 -4.8522 16 1 6.2032 4.2664 -5.2461 17 6 7.7191 2.8694 -5.7997 18 1 8.6872 3.0309 -6.2501 19 6 7.0045 1.7272 -6.0924 20 7 5.8253 1.5306 -5.5443 21 14 7.7121 0.4579 -7.2663 22 1 9.0432 0.9121 -7.7426 23 1 7.8547 -0.8419 -6.5626 24 1 6.8005 0.2950 -8.4271 25 6 6.9164 3.2450 -3.4789 26 6 1.8610 3.4998 0.0064 27 7 1.3022 2.3038 0.0010 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 5.0857 2.4366 -0.0010 32 1 3.5675 5.6956 0.6417 33 1 5.5801 6.0196 -0.6898 34 1 6.7976 6.2065 -1.7423 35 1 8.2673 5.2194 -1.9379 36 1 6.5915 6.4627 -4.1689 37 1 8.2325 6.9479 -3.6771 38 1 8.3215 5.5003 -5.6785 39 1 9.0703 4.6848 -4.2852 40 1 5.3228 0.7269 -5.7499 41 1 7.8430 2.7950 -3.1228 42 1 6.1439 2.4802 -3.5601 43 1 1.2504 4.3906 0.0115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:41 Heat of formation + Delta-G solvation = 13.255458 kcal Electronic energy + Delta-G solvation = -26753.634707 eV Core-core repulsion = 22993.749443 eV Total energy + Delta-G solvation = -3759.885264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00851 -39.58878 -38.20298 -36.84600 -33.98671 -33.58938 -33.39730 -31.84051 -30.12214 -29.51400 -27.51779 -25.42396 -24.96658 -24.36037 -23.63206 -21.92866 -21.43851 -19.36860 -18.69554 -18.04617 -17.83591 -17.10455 -16.27354 -16.12285 -15.53447 -15.04853 -14.60973 -14.50788 -14.28701 -14.07618 -13.80399 -13.71156 -13.41504 -13.17316 -13.06822 -12.67065 -12.44330 -12.14326 -11.96258 -11.88375 -11.36379 -11.05856 -10.99762 -10.88723 -10.63438 -10.51393 -10.38132 -10.24855 -10.00178 -9.87580 -9.40615 -9.13514 -8.96536 -8.81495 -8.43988 -8.05307 -7.75450 -5.99027 -4.08367 0.67656 1.38401 1.87579 2.74458 3.30729 3.39473 3.42002 3.65876 3.77823 4.03109 4.19831 4.43618 4.67797 4.76393 4.88179 4.93350 5.12750 5.20316 5.24819 5.30334 5.32445 5.45697 5.46938 5.55109 5.63042 5.89284 5.94537 6.08512 6.12118 6.22616 6.27933 6.37442 6.58035 6.64784 6.82948 6.92343 6.94774 7.12690 7.24020 7.31989 7.63314 7.85636 7.98589 8.21679 8.30995 8.38039 8.80568 8.95925 9.57721 11.05873 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.004318 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.852117 B = 6482.734393 C = 8508.110491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.292 6.292 3 C 0.502 3.498 4 N -0.528 5.528 5 C 0.277 3.723 6 C -0.211 4.211 7 C -0.026 4.026 8 C -0.201 4.201 9 C 0.526 3.474 10 O -0.534 6.534 11 N -0.595 5.595 12 C 0.106 3.894 13 C -0.134 4.134 14 C -0.111 4.111 15 C 0.041 3.959 16 H 0.028 0.972 17 C -0.523 4.523 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.878 5.878 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.111 3.889 26 C 0.192 3.808 27 N -0.580 5.580 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.165 0.835 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.263 0.737 41 H 0.043 0.957 42 H 0.123 0.877 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 8.654 14.337 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.193 6.193 3 C 0.201 3.799 4 N -0.254 5.254 5 C 0.110 3.890 6 C -0.217 4.217 7 C -0.048 4.048 8 C -0.222 4.222 9 C 0.316 3.684 10 O -0.414 6.414 11 N -0.326 5.326 12 C -0.018 4.018 13 C -0.172 4.172 14 C -0.149 4.149 15 C 0.022 3.978 16 H 0.046 0.954 17 C -0.562 4.562 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.515 5.515 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.009 4.009 26 C 0.029 3.971 27 N -0.311 5.311 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.182 0.818 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.141 0.859 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.234 6.761 14.182 16.903 hybrid contribution 0.665 0.419 -0.929 1.217 sum -5.568 7.180 13.253 16.069 Atomic orbital electron populations 1.22927 0.76163 1.03170 1.02654 1.86044 1.23020 1.23248 1.86967 1.20750 0.86343 0.84491 0.88343 1.67521 1.07118 1.30369 1.20348 1.23031 0.99760 0.84811 0.81437 1.20393 0.95567 0.95680 1.10013 1.21918 0.92950 0.93707 0.96185 1.23349 0.99595 1.01468 0.97753 1.18379 0.81479 0.86059 0.82518 1.90838 1.49388 1.32925 1.68217 1.48532 1.21980 1.20616 1.41433 1.21736 0.95148 0.87190 0.97681 1.21950 1.01086 0.98443 0.95762 1.21636 0.99383 0.96432 0.97463 1.19028 0.94649 0.92028 0.92097 0.95384 1.21105 1.04283 1.04244 1.26525 0.92353 1.25053 0.94757 0.98183 0.95969 1.69892 1.11790 1.27108 1.42705 0.86561 0.79109 0.81593 0.80912 1.19776 1.20918 1.21038 1.22412 1.00470 0.90302 0.87761 1.22915 0.91263 0.94127 0.88791 1.67889 1.41064 0.99169 1.22932 0.88205 0.92166 0.91949 0.81783 0.84542 0.84656 0.90826 0.91889 0.92155 0.92166 0.93028 0.93158 0.92705 0.93819 0.85864 0.81571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 10.35 101.05 1.05 1.58 16 2 O -0.29 -4.84 10.55 -17.68 -0.19 -5.02 16 3 C 0.50 9.04 8.48 -91.00 -0.77 8.27 16 4 N -0.53 -10.23 10.44 -14.33 -0.15 -10.38 16 5 C 0.28 4.77 7.84 -16.71 -0.13 4.64 16 6 C -0.21 -3.04 4.60 -104.78 -0.48 -3.53 16 7 C -0.03 -0.29 9.86 -37.18 -0.37 -0.66 16 8 C -0.20 -2.54 9.27 -37.52 -0.35 -2.88 16 9 C 0.53 9.69 6.71 -13.03 -0.09 9.61 16 10 O -0.53 -12.09 11.40 5.17 0.06 -12.03 16 11 N -0.59 -11.23 2.97 -174.20 -0.52 -11.75 16 12 C 0.11 1.51 6.31 -3.71 -0.02 1.49 16 13 C -0.13 -2.05 6.08 -26.61 -0.16 -2.21 16 14 C -0.11 -2.16 5.10 -26.69 -0.14 -2.30 16 15 C 0.04 1.00 2.26 -91.43 -0.21 0.80 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 17 C -0.52 -14.17 8.56 -34.44 -0.29 -14.47 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.77 5.31 -17.82 -0.09 1.68 16 20 N -0.88 -25.98 11.41 55.43 0.63 -25.35 16 21 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.11 2.62 5.44 -3.48 -0.02 2.60 16 26 C 0.19 2.63 11.10 -16.70 -0.19 2.44 16 27 N -0.58 -9.20 9.18 -14.32 -0.13 -9.34 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 31 H 0.17 2.74 7.01 -52.49 -0.37 2.37 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.14 1.26 5.90 -52.49 -0.31 0.95 16 34 H 0.07 0.80 5.37 -51.93 -0.28 0.52 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.12 3.46 5.14 -51.93 -0.27 3.20 16 43 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 350.96 15.07 5.29 5.29 Total: -1.00 -34.57 350.96 -8.12 -42.69 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.83 Total: 2.36 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -2.26 Total: 7.04 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.17 Total: -56.81 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.13 Total: -17.06 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.57 -8.12 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.944 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds