Wall clock time and date at job start Tue Mar 31 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35329 * 116.99675 * 2 1 4 4 N 1.32467 * 118.99274 * 180.02562 * 3 2 1 5 5 C 1.32001 * 120.94813 * 179.97438 * 4 3 2 6 6 C 1.40291 * 118.95201 * 0.02562 * 5 4 3 7 7 C 1.47049 * 120.91014 * 179.97438 * 6 5 4 8 8 C 1.34947 * 119.99482 * 43.34965 * 7 6 5 9 9 C 1.46276 * 120.00258 * 10.00366 * 8 7 6 10 10 O 1.21720 * 119.99678 * 6.56845 * 9 8 7 11 11 N 1.34774 * 120.00132 * 186.57055 * 9 8 7 12 12 C 1.46923 * 120.63253 * 354.49353 * 11 9 8 13 13 C 1.53189 * 108.77547 * 233.58904 * 12 11 9 14 14 C 1.53043 * 109.30893 * 305.35913 * 13 12 11 15 15 C 1.53035 * 109.53726 * 61.36987 * 14 13 12 16 16 H 1.08998 * 109.49774 * 58.61639 * 15 14 13 17 17 C 1.50704 * 109.49683 * 178.68131 * 15 14 13 18 18 H 1.07995 * 120.00264 * 359.97438 * 17 15 14 19 19 C 1.37879 * 119.99760 * 180.02562 * 17 15 14 20 20 N 1.31509 * 120.00446 * 359.97438 * 19 17 15 21 21 Si 1.86808 * 119.99733 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46869 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46915 * 119.99443 * 21 19 17 24 24 H 1.48494 * 109.46849 * 239.99404 * 21 19 17 25 25 C 1.46928 * 120.63134 * 174.20949 * 11 9 8 26 26 C 1.40297 * 118.18493 * 0.27140 * 6 5 4 27 27 N 1.32011 * 118.95146 * 359.44508 * 26 6 5 28 28 H 1.09004 * 109.46966 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47119 * 299.99573 * 1 2 3 30 30 H 1.08993 * 109.47481 * 60.00190 * 1 2 3 31 31 H 1.07997 * 120.52430 * 179.97438 * 5 4 3 32 32 H 1.07992 * 120.00703 * 223.34213 * 7 6 5 33 33 H 1.08000 * 119.99710 * 190.01321 * 8 7 6 34 34 H 1.09002 * 109.58396 * 353.37121 * 12 11 9 35 35 H 1.09002 * 109.58885 * 113.65330 * 12 11 9 36 36 H 1.08995 * 109.50115 * 65.31398 * 13 12 11 37 37 H 1.09003 * 109.49924 * 185.40864 * 13 12 11 38 38 H 1.09005 * 109.45675 * 181.39093 * 14 13 12 39 39 H 1.08997 * 109.46161 * 301.34137 * 14 13 12 40 40 H 0.96998 * 120.00359 * 180.02562 * 20 19 17 41 41 H 1.08995 * 109.58742 * 246.20272 * 25 11 9 42 42 H 1.09000 * 109.58297 * 6.62912 * 25 11 9 43 43 H 1.08000 * 120.52339 * 179.72635 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2058 0.0000 4 7 3.3671 1.2520 -0.0005 5 6 4.0061 2.4070 -0.0010 6 6 3.2607 3.5955 -0.0005 7 6 3.9282 4.9058 -0.0005 8 6 4.9913 5.1213 -0.8031 9 6 5.3465 4.1383 -1.8265 10 8 4.6171 3.1864 -2.0351 11 7 6.4813 4.2865 -2.5383 12 6 7.3101 5.4897 -2.3838 13 6 7.5407 6.1102 -3.7653 14 6 8.1334 5.0547 -4.7017 15 6 7.1485 3.8931 -4.8522 16 1 6.2032 4.2664 -5.2461 17 6 7.7191 2.8694 -5.7997 18 1 8.6872 3.0309 -6.2501 19 6 7.0045 1.7272 -6.0924 20 7 5.8253 1.5306 -5.5443 21 14 7.7121 0.4579 -7.2663 22 1 9.0432 0.9121 -7.7426 23 1 7.8547 -0.8419 -6.5626 24 1 6.8005 0.2950 -8.4271 25 6 6.9164 3.2450 -3.4789 26 6 1.8610 3.4998 0.0064 27 7 1.3022 2.3038 0.0010 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 5.0857 2.4366 -0.0010 32 1 3.5675 5.6956 0.6417 33 1 5.5801 6.0196 -0.6898 34 1 6.7976 6.2065 -1.7423 35 1 8.2673 5.2194 -1.9379 36 1 6.5915 6.4627 -4.1689 37 1 8.2325 6.9479 -3.6771 38 1 8.3215 5.5003 -5.6785 39 1 9.0703 4.6848 -4.2852 40 1 5.3228 0.7269 -5.7499 41 1 7.8430 2.7950 -3.1228 42 1 6.1439 2.4802 -3.5601 43 1 1.2504 4.3906 0.0115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:40 Heat of formation + Delta-G solvation = -13.518994 kcal Electronic energy + Delta-G solvation = -26754.795734 eV Core-core repulsion = 22993.749443 eV Total energy + Delta-G solvation = -3761.046291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.21257 -40.98248 -39.40779 -38.34133 -35.33837 -35.06893 -34.80803 -33.47527 -31.65224 -30.82870 -28.54262 -27.21939 -26.45917 -25.55255 -24.91540 -23.48321 -22.74183 -20.93165 -19.86814 -19.37939 -19.01495 -18.60192 -18.02368 -17.39874 -16.92703 -16.51639 -16.35455 -15.67899 -15.57805 -15.32552 -15.18920 -14.91524 -14.73353 -14.49602 -14.40808 -14.19322 -13.94265 -13.60765 -13.44574 -12.95471 -12.91209 -12.66416 -12.41649 -12.29834 -12.25380 -12.14767 -11.90791 -11.70184 -11.62650 -11.13065 -11.00088 -10.93978 -10.62389 -10.51862 -10.08137 -9.33379 -9.17918 -8.14131 -6.31268 -0.44841 0.20658 0.78031 1.35143 1.37010 1.48874 1.63155 2.30244 2.40021 2.46905 2.81518 3.09699 3.14759 3.64485 3.67435 3.79214 3.86938 4.07571 4.18585 4.22195 4.35255 4.35560 4.37064 4.57997 4.63698 4.66583 4.78406 4.78881 4.86286 4.90189 5.10852 5.11907 5.20982 5.26645 5.29235 5.33995 5.51292 5.53581 5.68994 5.74492 5.90031 5.99960 6.16526 6.31590 6.77444 6.82496 7.08313 7.38362 7.43632 8.88173 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.004318 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.852117 B = 6482.734393 C = 8508.110491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.316 6.316 3 C 0.480 3.520 4 N -0.573 5.573 5 C 0.255 3.745 6 C -0.214 4.214 7 C 0.003 3.997 8 C -0.207 4.207 9 C 0.513 3.487 10 O -0.590 6.590 11 N -0.604 5.604 12 C 0.101 3.899 13 C -0.127 4.127 14 C -0.107 4.107 15 C 0.040 3.960 16 H -0.018 1.018 17 C -0.535 4.535 18 H 0.061 0.939 19 C 0.010 3.990 20 N -0.914 5.914 21 Si 0.954 3.046 22 H -0.257 1.257 23 H -0.285 1.285 24 H -0.283 1.283 25 C 0.127 3.873 26 C 0.191 3.809 27 N -0.580 5.580 28 H 0.129 0.871 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.154 0.846 32 H 0.200 0.800 33 H 0.183 0.817 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.105 0.895 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.256 0.744 41 H 0.034 0.966 42 H 0.072 0.928 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.967 12.272 16.015 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.218 6.218 3 C 0.178 3.822 4 N -0.300 5.300 5 C 0.089 3.911 6 C -0.218 4.218 7 C -0.018 4.018 8 C -0.227 4.227 9 C 0.305 3.695 10 O -0.473 6.473 11 N -0.334 5.334 12 C -0.020 4.020 13 C -0.165 4.165 14 C -0.145 4.145 15 C 0.020 3.980 16 H 0.001 0.999 17 C -0.574 4.574 18 H 0.079 0.921 19 C -0.190 4.190 20 N -0.553 5.553 21 Si 0.780 3.220 22 H -0.181 1.181 23 H -0.211 1.211 24 H -0.209 1.209 25 C 0.004 3.996 26 C 0.028 3.972 27 N -0.310 5.310 28 H 0.147 0.853 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.172 0.828 32 H 0.217 0.783 33 H 0.200 0.800 34 H 0.140 0.860 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.090 0.910 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.872 10.431 15.871 19.879 hybrid contribution 0.512 -0.718 -1.452 1.699 sum -5.359 9.713 14.419 18.193 Atomic orbital electron populations 1.23227 0.73790 1.05266 1.02923 1.86005 1.25475 1.23337 1.87013 1.20954 0.86289 0.85504 0.89404 1.67371 1.08511 1.32185 1.21973 1.23067 0.99701 0.85807 0.82488 1.20792 0.96102 0.96425 1.08511 1.22479 0.90952 0.92837 0.95504 1.23345 1.01123 1.01374 0.96857 1.19491 0.80411 0.86464 0.83126 1.90836 1.51059 1.35535 1.69890 1.48536 1.23128 1.21095 1.40602 1.22125 0.95912 0.86014 0.97984 1.21920 1.01301 0.98230 0.95046 1.21533 0.98315 0.95764 0.98894 1.18956 0.93734 0.93439 0.91838 0.99941 1.21587 1.04212 1.04844 1.26740 0.92063 1.25885 0.95004 1.00417 0.97662 1.70113 1.13393 1.27360 1.44413 0.85561 0.78959 0.78844 0.78679 1.18097 1.21072 1.20928 1.21673 0.98186 0.90840 0.88902 1.23795 0.91615 0.94807 0.86953 1.67984 1.40735 0.99476 1.22823 0.85268 0.90911 0.92513 0.82849 0.78334 0.80000 0.85954 0.90195 0.93200 0.87645 0.93345 0.92514 0.93521 0.94785 0.90979 0.76656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 10.35 113.37 1.17 2.15 16 2 O -0.32 -11.02 10.55 -86.17 -0.91 -11.93 16 3 C 0.48 18.04 8.48 180.48 1.53 19.57 16 4 N -0.57 -23.71 10.44 -312.19 -3.26 -26.97 16 5 C 0.26 9.15 7.84 85.17 0.67 9.82 16 6 C -0.21 -5.81 4.60 -19.97 -0.09 -5.90 16 7 C 0.00 0.05 9.86 23.83 0.24 0.28 16 8 C -0.21 -4.38 9.27 23.60 0.22 -4.16 16 9 C 0.51 18.73 6.71 86.33 0.58 19.31 16 10 O -0.59 -28.05 11.40 -4.41 -0.05 -28.10 16 11 N -0.60 -22.65 2.97 -823.25 -2.44 -25.09 16 12 C 0.10 2.51 6.31 86.36 0.54 3.06 16 13 C -0.13 -3.48 6.08 30.67 0.19 -3.30 16 14 C -0.11 -4.09 5.10 30.62 0.16 -3.93 16 15 C 0.04 2.01 2.26 -11.32 -0.03 1.99 16 16 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 17 C -0.54 -30.10 8.56 25.60 0.22 -29.88 16 18 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 19 C 0.01 0.55 5.31 84.66 0.45 1.00 16 20 N -0.91 -57.68 11.41 21.45 0.24 -57.44 16 21 Si 0.95 45.73 29.54 68.60 2.03 47.75 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 25 C 0.13 6.31 5.44 86.51 0.47 6.78 16 26 C 0.19 4.81 11.10 85.17 0.95 5.75 16 27 N -0.58 -18.20 9.18 -312.18 -2.87 -21.07 16 28 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 30 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 31 H 0.15 5.52 7.01 -2.91 -0.02 5.50 16 32 H 0.20 1.11 8.06 -2.91 -0.02 1.08 16 33 H 0.18 2.10 5.90 -2.91 -0.02 2.08 16 34 H 0.12 1.88 5.37 -2.39 -0.01 1.87 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 37 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 41 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 4.38 5.14 -2.39 -0.01 4.37 16 43 H 0.22 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -87.06 350.96 1.03 -86.03 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.02 Total: 14.26 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 7.26 Total: 22.54 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -8.32 Total: -130.56 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.96 Total: -40.03 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -87.06 1.03 -86.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.514 kcal (2) G-P(sol) polarization free energy of solvation -87.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds