Wall clock time and date at job start Tue Mar 31 2020 11:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21281 * 119.99664 * 2 1 4 4 N 1.34776 * 120.00132 * 180.02562 * 2 1 3 5 5 C 1.39282 * 119.99837 * 175.16980 * 4 2 1 6 6 C 1.39475 * 120.55275 * 33.04064 * 5 4 2 7 7 C 1.38274 * 118.42369 * 179.97438 * 6 5 4 8 8 C 1.38777 * 119.45853 * 359.97438 * 7 6 5 9 9 N 1.31384 * 121.10062 * 359.72243 * 8 7 6 10 10 C 1.32843 * 121.70708 * 0.57214 * 9 8 7 11 11 C 1.47816 * 119.78951 * 179.70676 * 10 9 8 12 12 O 1.21554 * 119.99635 * 254.95877 * 11 10 9 13 13 N 1.34771 * 119.99965 * 74.96413 * 11 10 9 14 14 C 1.46927 * 120.63502 * 355.03272 * 13 11 10 15 15 C 1.53185 * 108.77860 * 126.43327 * 14 13 11 16 16 C 1.53038 * 109.31529 * 54.63663 * 15 14 13 17 17 C 1.53041 * 109.53755 * 298.63645 * 16 15 14 18 18 H 1.09009 * 109.49457 * 301.38190 * 17 16 15 19 19 C 1.50695 * 109.49816 * 181.31594 * 17 16 15 20 20 H 1.08000 * 120.00193 * 0.06417 * 19 17 16 21 21 C 1.37884 * 119.99920 * 180.34184 * 19 17 16 22 22 N 1.31514 * 119.99748 * 359.71637 * 21 19 17 23 23 Si 1.86797 * 119.99930 * 179.72646 * 21 19 17 24 24 H 1.48497 * 109.47174 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47340 * 119.99814 * 23 21 19 26 26 H 1.48502 * 109.46694 * 239.99762 * 23 21 19 27 27 C 1.46934 * 120.60610 * 175.05254 * 13 11 10 28 28 H 1.09007 * 109.47445 * 269.99826 * 1 2 3 29 29 H 1.08997 * 109.47820 * 30.00249 * 1 2 3 30 30 H 1.09000 * 109.47073 * 150.00196 * 1 2 3 31 31 H 0.96994 * 120.00205 * 355.17352 * 4 2 1 32 32 H 1.08004 * 120.79246 * 0.02562 * 6 5 4 33 33 H 1.08007 * 120.27066 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.44795 * 180.02562 * 8 7 6 35 35 H 1.09007 * 109.58326 * 6.64151 * 14 13 11 36 36 H 1.08998 * 109.58840 * 246.22350 * 14 13 11 37 37 H 1.09002 * 109.49787 * 294.68116 * 15 14 13 38 38 H 1.09002 * 109.52658 * 174.60821 * 15 14 13 39 39 H 1.08995 * 109.46139 * 178.61649 * 16 15 14 40 40 H 1.08997 * 109.44738 * 58.65081 * 16 15 14 41 41 H 0.97003 * 119.99327 * 180.02562 * 22 21 19 42 42 H 1.08996 * 109.56409 * 113.76016 * 27 13 11 43 43 H 1.09010 * 109.61417 * 353.33503 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5699 -1.1692 -0.1021 6 6 4.3232 -0.1370 0.4568 7 6 5.6994 -0.1834 0.3304 8 6 6.2875 -1.2455 -0.3419 9 7 5.5589 -2.2105 -0.8557 10 6 4.2335 -2.2083 -0.7657 11 6 3.4548 -3.3126 -1.3650 12 8 2.8445 -3.1335 -2.4008 13 7 3.4216 -4.5178 -0.7629 14 6 4.2392 -4.7822 0.4289 15 6 3.3303 -5.3100 1.5433 16 6 2.5549 -6.5259 1.0309 17 6 1.6774 -6.1116 -0.1526 18 1 0.9914 -5.3247 0.1611 19 6 0.8900 -7.3021 -0.6359 20 1 1.0029 -8.2587 -0.1475 21 6 0.0296 -7.1715 -1.7055 22 7 -0.1079 -6.0066 -2.3002 23 14 -0.9406 -8.6491 -2.3095 24 1 -0.6084 -9.8332 -1.4773 25 1 -2.3940 -8.3628 -2.2060 26 1 -0.5903 -8.9259 -3.7258 27 6 2.5670 -5.5923 -1.2865 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6985 -2.0057 0.0698 32 1 3.8431 0.6789 0.9768 33 1 6.3116 0.6004 0.7515 34 1 7.3624 -1.2818 -0.4402 35 1 4.7189 -3.8593 0.7550 36 1 4.9987 -5.5276 0.1930 37 1 2.6291 -4.5303 1.8409 38 1 3.9368 -5.6005 2.4012 39 1 1.9256 -6.9183 1.8296 40 1 3.2571 -7.2954 0.7104 41 1 -0.7135 -5.9147 -3.0524 42 1 3.1901 -6.4036 -1.6628 43 1 1.9432 -5.2042 -2.0918 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869231676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:46 Heat of formation + Delta-G solvation = -35.297648 kcal Electronic energy + Delta-G solvation = -27441.850593 eV Core-core repulsion = 23679.859909 eV Total energy + Delta-G solvation = -3761.990684 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.15267 -39.54814 -38.73309 -36.75520 -35.19229 -33.50063 -32.38000 -31.79637 -31.09923 -29.85730 -28.92767 -25.63074 -25.07768 -23.88347 -23.29641 -21.89396 -20.71589 -20.25935 -18.79593 -18.02578 -17.31079 -17.18264 -16.27259 -16.21985 -15.69157 -15.24831 -15.05781 -14.63940 -14.23493 -14.11098 -13.80174 -13.63007 -13.50543 -13.15964 -12.95571 -12.72819 -12.67765 -12.50199 -12.32751 -12.10599 -11.94640 -11.08776 -11.03901 -10.96398 -10.55949 -10.45580 -10.37864 -10.31931 -9.98749 -9.79743 -9.73676 -9.26605 -9.20356 -8.96327 -8.51556 -8.39491 -7.87113 -6.08760 -4.16526 0.81003 1.17244 2.41441 2.87667 2.96746 3.25105 3.34807 3.37284 3.45329 3.70257 4.36273 4.43592 4.55330 4.77742 4.82542 4.96428 5.11353 5.22449 5.23290 5.26964 5.29277 5.37203 5.44288 5.62988 5.75099 5.83549 5.97761 6.04404 6.09396 6.12332 6.23644 6.50839 6.57047 6.62063 6.78461 6.87537 7.05027 7.13956 7.17354 7.53141 7.75387 7.80289 7.89149 7.91093 8.09870 8.29082 8.64655 8.87595 9.49772 10.96954 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.004459 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.488298 B = 6277.725275 C = 7208.671073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.519 3.481 3 O -0.534 6.534 4 N -0.662 5.662 5 C 0.132 3.868 6 C -0.084 4.084 7 C -0.148 4.148 8 C 0.080 3.920 9 N -0.440 5.440 10 C 0.079 3.921 11 C 0.562 3.438 12 O -0.520 6.520 13 N -0.590 5.590 14 C 0.113 3.887 15 C -0.134 4.134 16 C -0.111 4.111 17 C 0.041 3.959 18 H 0.028 0.972 19 C -0.520 4.520 20 H 0.060 0.940 21 C 0.064 3.936 22 N -0.882 5.882 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.283 1.283 27 C 0.110 3.890 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.421 0.579 32 H 0.156 0.844 33 H 0.140 0.860 34 H 0.162 0.838 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.263 0.737 42 H 0.047 0.953 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.564 10.010 9.041 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.309 3.691 3 O -0.410 6.410 4 N -0.307 5.307 5 C 0.033 3.967 6 C -0.112 4.112 7 C -0.168 4.168 8 C -0.080 4.080 9 N -0.150 5.150 10 C -0.064 4.064 11 C 0.346 3.654 12 O -0.395 6.395 13 N -0.322 5.322 14 C -0.011 4.011 15 C -0.172 4.172 16 C -0.149 4.149 17 C 0.022 3.978 18 H 0.046 0.954 19 C -0.558 4.558 20 H 0.078 0.922 21 C -0.139 4.139 22 N -0.520 5.520 23 Si 0.720 3.280 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.009 4.009 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.258 0.742 32 H 0.173 0.827 33 H 0.158 0.842 34 H 0.179 0.821 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.838 10.221 7.865 15.092 hybrid contribution -1.003 -0.501 0.085 1.124 sum 6.835 9.720 7.950 14.297 Atomic orbital electron populations 1.21914 0.90030 1.06062 1.05292 1.21098 0.91229 0.82592 0.74180 1.90671 1.70595 1.31267 1.48486 1.43498 1.04607 1.11025 1.71556 1.18567 0.84188 0.96756 0.97154 1.21762 0.93522 0.98303 0.97587 1.22205 0.94842 0.99627 1.00129 1.22784 1.00271 0.89830 0.95138 1.67733 1.04425 1.26331 1.16540 1.21228 0.90808 0.96724 0.97597 1.17799 0.81047 0.82001 0.84535 1.90844 1.44775 1.81880 1.21998 1.48502 1.43326 1.12121 1.28208 1.21626 0.93288 1.00398 0.85779 1.21969 0.98690 0.99681 0.96859 1.21639 0.98328 0.95467 0.99464 1.18977 0.92235 0.96529 0.90033 0.95403 1.21110 1.23537 0.95739 1.15429 0.92209 1.25037 0.96588 0.95866 0.96433 1.69865 1.36928 1.22804 1.22393 0.86527 0.79785 0.82920 0.78743 1.19768 1.21000 1.20937 1.22429 0.91308 0.86256 1.00946 0.88263 0.88266 0.88974 0.74178 0.82673 0.84186 0.82106 0.91524 0.91470 0.92436 0.92059 0.92864 0.92978 0.92650 0.93467 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 10.31 36.00 0.37 -1.35 16 2 C 0.52 7.14 7.80 -10.99 -0.09 7.05 16 3 O -0.53 -8.57 14.45 5.56 0.08 -8.49 16 4 N -0.66 -9.70 5.05 -9.60 -0.05 -9.75 16 5 C 0.13 2.06 6.36 -83.35 -0.53 1.53 16 6 C -0.08 -1.12 8.81 -39.11 -0.34 -1.47 16 7 C -0.15 -1.61 10.10 -39.37 -0.40 -2.01 16 8 C 0.08 0.96 11.17 -17.54 -0.20 0.76 16 9 N -0.44 -6.99 9.79 -9.68 -0.09 -7.08 16 10 C 0.08 1.36 4.72 -82.85 -0.39 0.97 16 11 C 0.56 11.58 6.35 -12.34 -0.08 11.50 16 12 O -0.52 -12.76 16.54 5.32 0.09 -12.67 16 13 N -0.59 -11.67 2.97 -173.89 -0.52 -12.19 16 14 C 0.11 1.82 6.34 -3.71 -0.02 1.79 16 15 C -0.13 -2.06 6.08 -26.62 -0.16 -2.22 16 16 C -0.11 -2.08 5.11 -26.69 -0.14 -2.22 16 17 C 0.04 0.95 2.25 -91.65 -0.21 0.75 16 18 H 0.03 0.70 8.14 -51.92 -0.42 0.27 16 19 C -0.52 -13.37 8.57 -34.44 -0.30 -13.66 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 22 N -0.88 -24.34 11.39 55.43 0.63 -23.71 16 23 Si 0.89 20.52 29.54 -169.99 -5.02 15.49 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.11 2.56 5.38 -3.71 -0.02 2.54 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.42 6.14 8.12 -40.82 -0.33 5.80 16 32 H 0.16 2.03 6.17 -52.48 -0.32 1.71 16 33 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.07 0.99 5.97 -51.92 -0.31 0.68 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.12 3.35 5.15 -51.92 -0.27 3.08 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -32.14 354.68 -7.97 -40.11 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.85 Total: 7.36 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -2.59 Total: 5.57 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.03 Total: -52.73 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.17 Total: -21.15 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.14 -7.97 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869231676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.817 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds