Wall clock time and date at job start Tue Mar 31 2020 11:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21281 * 119.99664 * 2 1 4 4 N 1.34776 * 120.00132 * 180.02562 * 2 1 3 5 5 C 1.39282 * 119.99837 * 175.16980 * 4 2 1 6 6 C 1.39475 * 120.55275 * 33.04064 * 5 4 2 7 7 C 1.38274 * 118.42369 * 179.97438 * 6 5 4 8 8 C 1.38777 * 119.45853 * 359.97438 * 7 6 5 9 9 N 1.31384 * 121.10062 * 359.72243 * 8 7 6 10 10 C 1.32843 * 121.70708 * 0.57214 * 9 8 7 11 11 C 1.47816 * 119.78951 * 179.70676 * 10 9 8 12 12 O 1.21554 * 119.99635 * 254.95877 * 11 10 9 13 13 N 1.34771 * 119.99965 * 74.96413 * 11 10 9 14 14 C 1.46927 * 120.63502 * 355.03272 * 13 11 10 15 15 C 1.53185 * 108.77860 * 126.43327 * 14 13 11 16 16 C 1.53038 * 109.31529 * 54.63663 * 15 14 13 17 17 C 1.53041 * 109.53755 * 298.63645 * 16 15 14 18 18 H 1.09009 * 109.49457 * 301.38190 * 17 16 15 19 19 C 1.50695 * 109.49816 * 181.31594 * 17 16 15 20 20 H 1.08000 * 120.00193 * 0.06417 * 19 17 16 21 21 C 1.37884 * 119.99920 * 180.34184 * 19 17 16 22 22 N 1.31514 * 119.99748 * 359.71637 * 21 19 17 23 23 Si 1.86797 * 119.99930 * 179.72646 * 21 19 17 24 24 H 1.48497 * 109.47174 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47340 * 119.99814 * 23 21 19 26 26 H 1.48502 * 109.46694 * 239.99762 * 23 21 19 27 27 C 1.46934 * 120.60610 * 175.05254 * 13 11 10 28 28 H 1.09007 * 109.47445 * 269.99826 * 1 2 3 29 29 H 1.08997 * 109.47820 * 30.00249 * 1 2 3 30 30 H 1.09000 * 109.47073 * 150.00196 * 1 2 3 31 31 H 0.96994 * 120.00205 * 355.17352 * 4 2 1 32 32 H 1.08004 * 120.79246 * 0.02562 * 6 5 4 33 33 H 1.08007 * 120.27066 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.44795 * 180.02562 * 8 7 6 35 35 H 1.09007 * 109.58326 * 6.64151 * 14 13 11 36 36 H 1.08998 * 109.58840 * 246.22350 * 14 13 11 37 37 H 1.09002 * 109.49787 * 294.68116 * 15 14 13 38 38 H 1.09002 * 109.52658 * 174.60821 * 15 14 13 39 39 H 1.08995 * 109.46139 * 178.61649 * 16 15 14 40 40 H 1.08997 * 109.44738 * 58.65081 * 16 15 14 41 41 H 0.97003 * 119.99327 * 180.02562 * 22 21 19 42 42 H 1.08996 * 109.56409 * 113.76016 * 27 13 11 43 43 H 1.09010 * 109.61417 * 353.33503 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5699 -1.1692 -0.1021 6 6 4.3232 -0.1370 0.4568 7 6 5.6994 -0.1834 0.3304 8 6 6.2875 -1.2455 -0.3419 9 7 5.5589 -2.2105 -0.8557 10 6 4.2335 -2.2083 -0.7657 11 6 3.4548 -3.3126 -1.3650 12 8 2.8445 -3.1335 -2.4008 13 7 3.4216 -4.5178 -0.7629 14 6 4.2392 -4.7822 0.4289 15 6 3.3303 -5.3100 1.5433 16 6 2.5549 -6.5259 1.0309 17 6 1.6774 -6.1116 -0.1526 18 1 0.9914 -5.3247 0.1611 19 6 0.8900 -7.3021 -0.6359 20 1 1.0029 -8.2587 -0.1475 21 6 0.0296 -7.1715 -1.7055 22 7 -0.1079 -6.0066 -2.3002 23 14 -0.9406 -8.6491 -2.3095 24 1 -0.6084 -9.8332 -1.4773 25 1 -2.3940 -8.3628 -2.2060 26 1 -0.5903 -8.9259 -3.7258 27 6 2.5670 -5.5923 -1.2865 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6985 -2.0057 0.0698 32 1 3.8431 0.6789 0.9768 33 1 6.3116 0.6004 0.7515 34 1 7.3624 -1.2818 -0.4402 35 1 4.7189 -3.8593 0.7550 36 1 4.9987 -5.5276 0.1930 37 1 2.6291 -4.5303 1.8409 38 1 3.9368 -5.6005 2.4012 39 1 1.9256 -6.9183 1.8296 40 1 3.2571 -7.2954 0.7104 41 1 -0.7135 -5.9147 -3.0524 42 1 3.1901 -6.4036 -1.6628 43 1 1.9432 -5.2042 -2.0918 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869231676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:45 Heat of formation + Delta-G solvation = -57.153900 kcal Electronic energy + Delta-G solvation = -27442.798351 eV Core-core repulsion = 23679.859909 eV Total energy + Delta-G solvation = -3762.938443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32821 -40.88253 -40.00465 -38.38822 -36.31921 -35.32858 -33.70875 -33.19560 -32.18926 -31.51472 -29.93949 -27.28989 -26.70990 -25.05809 -24.51643 -23.47431 -21.81141 -21.74720 -20.30060 -19.13255 -18.85741 -18.26276 -18.07891 -17.51788 -17.06675 -16.55812 -16.32744 -16.18396 -15.66715 -15.29862 -15.22447 -14.93545 -14.84119 -14.53295 -14.37031 -14.20504 -13.88306 -13.63142 -13.54954 -13.41470 -13.18345 -12.90853 -12.70987 -12.30394 -12.23648 -12.15474 -11.86828 -11.66261 -11.57040 -11.24292 -11.00089 -10.88977 -10.76123 -10.52330 -10.34405 -9.55186 -9.49890 -8.10891 -6.25730 -0.27406 0.13577 1.34670 1.38699 1.41442 1.44353 1.54571 1.88368 1.97006 2.43494 2.63112 3.14901 3.21106 3.55730 3.72524 3.79897 3.97660 4.01451 4.11480 4.11847 4.29543 4.38210 4.43694 4.53780 4.56639 4.70007 4.76240 4.79470 4.86613 4.95532 5.06880 5.08460 5.12386 5.20941 5.24159 5.34130 5.49047 5.59788 5.62868 5.87694 5.96770 6.06448 6.33167 6.46900 6.73920 6.81817 6.85409 7.07312 7.44207 8.92897 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.004459 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.488298 B = 6277.725275 C = 7208.671073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.515 3.485 3 O -0.559 6.559 4 N -0.667 5.667 5 C 0.120 3.880 6 C -0.091 4.091 7 C -0.121 4.121 8 C 0.085 3.915 9 N -0.463 5.463 10 C 0.051 3.949 11 C 0.562 3.438 12 O -0.576 6.576 13 N -0.589 5.589 14 C 0.112 3.888 15 C -0.124 4.124 16 C -0.105 4.105 17 C 0.042 3.958 18 H 0.000 1.000 19 C -0.533 4.533 20 H 0.061 0.939 21 C 0.015 3.985 22 N -0.912 5.912 23 Si 0.953 3.047 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.287 1.287 27 C 0.123 3.877 28 H 0.127 0.873 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.416 0.584 32 H 0.159 0.841 33 H 0.187 0.813 34 H 0.204 0.796 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.260 0.740 42 H 0.036 0.964 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.514 10.690 11.352 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.306 3.694 3 O -0.437 6.437 4 N -0.311 5.311 5 C 0.021 3.979 6 C -0.119 4.119 7 C -0.141 4.141 8 C -0.076 4.076 9 N -0.174 5.174 10 C -0.089 4.089 11 C 0.348 3.652 12 O -0.455 6.455 13 N -0.320 5.320 14 C -0.011 4.011 15 C -0.162 4.162 16 C -0.143 4.143 17 C 0.023 3.977 18 H 0.018 0.982 19 C -0.571 4.571 20 H 0.080 0.920 21 C -0.185 4.185 22 N -0.551 5.551 23 Si 0.779 3.221 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.213 1.213 27 C 0.002 3.998 28 H 0.145 0.855 29 H 0.128 0.872 30 H 0.105 0.895 31 H 0.253 0.747 32 H 0.176 0.824 33 H 0.204 0.796 34 H 0.220 0.780 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.798 10.877 10.222 17.855 hybrid contribution -1.500 -0.644 -0.604 1.740 sum 8.299 10.234 9.618 16.313 Atomic orbital electron populations 1.21969 0.87260 1.06264 1.07131 1.21751 0.92549 0.81886 0.73191 1.90642 1.71387 1.31840 1.49837 1.43642 1.04729 1.11172 1.71553 1.18777 0.84618 0.97009 0.97487 1.21954 0.94690 0.97568 0.97682 1.22711 0.93978 0.99700 0.97661 1.23527 1.01800 0.88767 0.93540 1.67665 1.03762 1.28452 1.17526 1.20607 0.91527 0.96496 1.00235 1.18346 0.80426 0.82721 0.83741 1.90793 1.47200 1.82933 1.24550 1.48483 1.42992 1.11342 1.29167 1.21867 0.93142 1.01652 0.84393 1.21914 0.98643 0.97983 0.97610 1.21525 0.98026 0.97072 0.97668 1.18897 0.92320 0.94847 0.91631 0.98181 1.21513 1.23678 0.96616 1.15312 0.92039 1.25791 0.97747 0.98133 0.96802 1.70040 1.37578 1.24705 1.22758 0.85582 0.78402 0.80219 0.77926 1.18638 1.20717 1.21294 1.21899 0.91165 0.86637 1.00110 0.85514 0.87221 0.89474 0.74683 0.82378 0.79568 0.77981 0.89704 0.90443 0.92462 0.88002 0.92298 0.92694 0.93107 0.94600 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 10.31 71.23 0.73 -2.52 16 2 C 0.51 14.23 7.80 87.66 0.68 14.91 16 3 O -0.56 -17.73 14.45 -3.03 -0.04 -17.78 16 4 N -0.67 -20.05 5.05 -302.68 -1.53 -21.58 16 5 C 0.12 3.71 6.36 38.69 0.25 3.96 16 6 C -0.09 -2.24 8.81 22.58 0.20 -2.05 16 7 C -0.12 -2.12 10.10 22.41 0.23 -1.90 16 8 C 0.08 1.70 11.17 84.89 0.95 2.65 16 9 N -0.46 -13.98 9.79 -184.54 -1.81 -15.79 16 10 C 0.05 1.79 4.72 41.96 0.20 1.99 16 11 C 0.56 24.16 6.35 86.78 0.55 24.71 16 12 O -0.58 -30.30 16.54 -3.88 -0.06 -30.36 16 13 N -0.59 -24.04 2.97 -822.34 -2.44 -26.49 16 14 C 0.11 3.45 6.34 86.36 0.55 4.00 16 15 C -0.12 -3.54 6.08 30.67 0.19 -3.36 16 16 C -0.11 -3.85 5.11 30.62 0.16 -3.69 16 17 C 0.04 2.01 2.25 -11.46 -0.03 1.98 16 18 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 19 C -0.53 -28.04 8.57 25.60 0.22 -27.82 16 20 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 21 C 0.01 0.81 5.30 84.66 0.45 1.26 16 22 N -0.91 -52.83 11.39 21.45 0.24 -52.59 16 23 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 27 C 0.12 6.03 5.38 86.36 0.46 6.50 16 28 H 0.13 1.75 8.14 -2.38 -0.02 1.74 16 29 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.42 12.90 8.12 -92.71 -0.75 12.15 16 32 H 0.16 3.83 6.17 -2.91 -0.02 3.81 16 33 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.20 2.30 8.06 -2.91 -0.02 2.27 16 35 H 0.08 2.37 5.97 -2.38 -0.01 2.35 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 4.77 5.15 -2.38 -0.01 4.76 16 Total: -1.00 -75.05 354.68 2.46 -72.60 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.29 Total: 26.38 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: 5.78 Total: 20.62 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -5.53 Total: -116.44 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -0.11 Total: -48.14 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -75.05 2.46 -72.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869231676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.443 kcal (2) G-P(sol) polarization free energy of solvation -75.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds