Wall clock time and date at job start Tue Mar 31 2020 11:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21274 * 120.00007 * 2 1 4 4 N 1.34778 * 120.00037 * 179.97438 * 2 1 3 5 5 C 1.39274 * 119.99928 * 174.17483 * 4 2 1 6 6 C 1.39485 * 120.55830 * 334.45415 * 5 4 2 7 7 C 1.38263 * 118.42968 * 179.97438 * 6 5 4 8 8 C 1.38784 * 119.45933 * 0.02562 * 7 6 5 9 9 N 1.31377 * 121.09875 * 359.71488 * 8 7 6 10 10 C 1.32847 * 121.71018 * 0.57086 * 9 8 7 11 11 C 1.47814 * 119.79356 * 179.70698 * 10 9 8 12 12 O 1.21562 * 119.99765 * 172.63603 * 11 10 9 13 13 N 1.34779 * 120.00012 * 352.36245 * 11 10 9 14 14 C 1.46924 * 120.62987 * 349.35796 * 13 11 10 15 15 C 1.52759 * 109.01156 * 233.58574 * 14 13 11 16 16 C 1.53039 * 109.38052 * 305.58968 * 15 14 13 17 17 C 1.53043 * 109.53816 * 61.24063 * 16 15 14 18 18 H 1.09004 * 109.49831 * 58.58668 * 17 16 15 19 19 C 1.50703 * 109.49852 * 178.67841 * 17 16 15 20 20 H 1.08008 * 119.99784 * 359.84253 * 19 17 16 21 21 C 1.37875 * 120.00070 * 179.83758 * 19 17 16 22 22 N 1.31510 * 120.00088 * 359.97438 * 21 19 17 23 23 Si 1.86801 * 119.99849 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47303 * 60.00225 * 23 21 19 25 25 H 1.48505 * 109.46775 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47099 * 300.00041 * 23 21 19 27 27 C 1.46930 * 120.62971 * 169.64346 * 13 11 10 28 28 H 1.08999 * 109.47134 * 269.99533 * 1 2 3 29 29 H 1.08999 * 109.47204 * 30.00266 * 1 2 3 30 30 H 1.09005 * 109.47045 * 149.99958 * 1 2 3 31 31 H 0.97003 * 119.99957 * 354.18158 * 4 2 1 32 32 H 1.07999 * 120.77898 * 0.02562 * 6 5 4 33 33 H 1.08003 * 120.26889 * 179.97438 * 7 6 5 34 34 H 1.08005 * 119.45113 * 179.97438 * 8 7 6 35 35 H 1.08997 * 109.59046 * 353.42446 * 14 13 11 36 36 H 1.09005 * 109.58166 * 113.84551 * 14 13 11 37 37 H 1.09001 * 109.56456 * 185.55621 * 15 14 13 38 38 H 1.09002 * 109.38669 * 65.51537 * 15 14 13 39 39 H 1.08998 * 109.46406 * 301.21662 * 16 15 14 40 40 H 1.09002 * 109.44747 * 181.25311 * 16 15 14 41 41 H 0.96999 * 120.00272 * 179.97438 * 22 21 19 42 42 H 1.08999 * 109.58310 * 246.15879 * 27 13 11 43 43 H 1.08995 * 109.58458 * 6.58036 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5682 -1.1704 -0.1219 6 6 4.2267 -0.1162 -0.7550 7 6 5.6051 -0.1642 -0.8515 8 6 6.2891 -1.2493 -0.3217 9 7 5.6490 -2.2292 0.2751 10 6 4.3254 -2.2319 0.3882 11 6 3.6482 -3.3596 1.0625 12 8 2.4548 -3.3051 1.2876 13 7 4.3528 -4.4506 1.4228 14 6 5.7318 -4.6400 0.9527 15 6 5.8470 -6.0101 0.2870 16 6 5.3595 -7.0886 1.2571 17 6 3.8896 -6.8396 1.6028 18 1 3.2945 -6.8486 0.6896 19 6 3.4014 -7.9205 2.5326 20 1 4.0715 -8.7083 2.8439 21 6 2.0994 -7.9037 2.9859 22 7 1.2836 -6.9442 2.6073 23 14 1.4945 -9.2432 4.1389 24 1 2.3072 -9.2307 5.3817 25 1 0.0694 -8.9985 4.4774 26 1 1.6261 -10.5647 3.4747 27 6 3.7542 -5.4762 2.2881 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6996 -2.0051 0.0861 32 1 3.6729 0.7181 -1.1594 33 1 6.1451 0.6359 -1.3361 34 1 7.3658 -1.2869 -0.3976 35 1 5.9820 -3.8624 0.2310 36 1 6.4166 -4.5895 1.7993 37 1 6.8871 -6.2014 0.0230 38 1 5.2338 -6.0272 -0.6140 39 1 5.9574 -7.0551 2.1679 40 1 5.4620 -8.0688 0.7914 41 1 0.3675 -6.9326 2.9258 42 1 4.2743 -5.4952 3.2457 43 1 2.6999 -5.2502 2.4470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869231677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:49 Heat of formation + Delta-G solvation = -15.854101 kcal Electronic energy + Delta-G solvation = -27165.213727 eV Core-core repulsion = 23404.066178 eV Total energy + Delta-G solvation = -3761.147549 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22722 -39.56976 -38.65565 -36.84043 -35.05475 -33.47619 -32.40254 -31.67520 -31.09106 -29.67013 -28.95905 -25.52821 -25.00439 -23.94977 -23.17662 -21.74528 -20.62799 -20.31659 -18.74394 -18.01173 -17.18797 -16.99020 -16.32578 -16.15512 -15.51467 -15.12378 -14.88805 -14.83325 -14.42394 -14.19686 -13.84580 -13.51957 -13.19333 -13.10185 -12.94154 -12.76577 -12.58397 -12.46183 -12.36683 -12.13677 -11.81557 -11.25274 -10.96916 -10.86179 -10.58623 -10.41051 -10.24603 -10.05712 -9.89528 -9.77010 -9.64273 -9.19039 -9.08066 -8.64223 -8.44774 -8.28218 -7.70710 -6.00578 -4.08935 0.64526 1.09231 2.45955 2.94772 3.13090 3.31054 3.36772 3.38543 3.58348 3.93054 4.29149 4.42228 4.54832 4.75762 4.80009 4.93329 5.07759 5.23268 5.28271 5.29346 5.29934 5.67972 5.69402 5.73224 5.81204 5.94499 6.00833 6.09946 6.28533 6.39341 6.50756 6.61809 6.71814 6.80998 6.91490 7.01158 7.14548 7.25504 7.37592 7.61909 7.70768 7.87123 7.94379 8.00416 8.23848 8.37949 8.71281 8.94836 9.56383 11.04528 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.004211 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.001559 B = 6647.057768 C = 8308.602634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.538 6.538 4 N -0.650 5.650 5 C 0.161 3.839 6 C -0.101 4.101 7 C -0.133 4.133 8 C 0.065 3.935 9 N -0.425 5.425 10 C 0.049 3.951 11 C 0.561 3.439 12 O -0.542 6.542 13 N -0.576 5.576 14 C 0.080 3.920 15 C -0.135 4.135 16 C -0.112 4.112 17 C 0.042 3.958 18 H 0.029 0.971 19 C -0.520 4.520 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.109 3.891 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.432 0.568 32 H 0.158 0.842 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.131 0.869 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.263 0.737 42 H 0.045 0.955 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 13.286 -8.380 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.302 3.698 3 O -0.415 6.415 4 N -0.302 5.302 5 C 0.060 3.940 6 C -0.128 4.128 7 C -0.153 4.153 8 C -0.095 4.095 9 N -0.137 5.137 10 C -0.091 4.091 11 C 0.347 3.653 12 O -0.421 6.421 13 N -0.304 5.304 14 C -0.043 4.043 15 C -0.173 4.173 16 C -0.150 4.150 17 C 0.022 3.978 18 H 0.047 0.953 19 C -0.559 4.559 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.519 5.519 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.011 4.011 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.278 0.722 32 H 0.175 0.825 33 H 0.158 0.842 34 H 0.180 0.820 35 H 0.147 0.853 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.613 13.338 -7.842 16.459 hybrid contribution -0.858 -0.526 0.445 1.100 sum 4.755 12.811 -7.397 15.539 Atomic orbital electron populations 1.21882 0.90303 1.05258 1.05595 1.21143 0.91305 0.82845 0.74490 1.90656 1.70604 1.31634 1.48633 1.44130 1.04677 1.12070 1.69277 1.18677 0.84675 0.95439 0.95205 1.21835 0.94833 0.98767 0.97412 1.22216 0.94297 0.99315 0.99489 1.22899 1.00734 0.89760 0.96155 1.67755 1.07576 1.24601 1.13736 1.21344 0.89745 0.96689 1.01282 1.17735 0.86081 0.82034 0.79424 1.90573 1.13886 1.80550 1.57135 1.48315 1.14436 1.20040 1.47635 1.22635 0.82246 0.98902 1.00511 1.21917 1.00020 0.96071 0.99328 1.21648 0.99345 0.96598 0.97380 1.18945 0.90375 0.91944 0.96492 0.95320 1.21068 0.96190 1.09663 1.28958 0.92415 1.25040 0.96831 0.95811 0.96284 1.69874 1.06079 1.31839 1.44105 0.86656 0.77742 0.82286 0.81312 1.20260 1.21276 1.20285 1.22396 1.01455 0.86864 0.90390 0.88126 0.88501 0.89444 0.72165 0.82474 0.84189 0.82003 0.85272 0.92534 0.92292 0.92673 0.93256 0.93244 0.92682 0.93689 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.31 36.01 0.37 -1.18 16 2 C 0.51 6.82 7.74 -10.99 -0.09 6.73 16 3 O -0.54 -8.38 14.35 5.56 0.08 -8.30 16 4 N -0.65 -9.56 4.82 -9.60 -0.05 -9.61 16 5 C 0.16 2.48 6.43 -83.35 -0.54 1.94 16 6 C -0.10 -1.30 8.80 -39.11 -0.34 -1.65 16 7 C -0.13 -1.36 10.10 -39.37 -0.40 -1.76 16 8 C 0.07 0.71 11.17 -17.54 -0.20 0.52 16 9 N -0.43 -6.18 6.16 -9.68 -0.06 -6.24 16 10 C 0.05 0.83 6.59 -82.84 -0.55 0.28 16 11 C 0.56 11.39 7.61 -12.34 -0.09 11.30 16 12 O -0.54 -12.08 13.28 5.31 0.07 -12.01 16 13 N -0.58 -11.92 2.98 -174.16 -0.52 -12.44 16 14 C 0.08 1.38 5.79 -3.93 -0.02 1.36 16 15 C -0.14 -2.32 6.06 -26.83 -0.16 -2.49 16 16 C -0.11 -2.29 5.11 -26.69 -0.14 -2.42 16 17 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 18 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.52 -14.06 8.56 -34.44 -0.29 -14.35 16 20 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 22 N -0.88 -25.15 11.39 55.43 0.63 -24.51 16 23 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.11 2.64 5.41 -3.71 -0.02 2.62 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.43 6.65 6.08 -40.82 -0.25 6.40 16 32 H 0.16 2.01 5.97 -52.49 -0.31 1.70 16 33 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.16 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.13 2.04 4.17 -78.41 -0.33 1.71 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.12 3.39 5.13 -51.93 -0.27 3.12 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -31.91 346.03 -8.18 -40.09 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.77 Total: 8.41 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -2.77 Total: 3.35 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.01 Total: -52.81 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.15 Total: -20.31 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.91 -8.18 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869231677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.238 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds