Wall clock time and date at job start Tue Mar 31 2020 11:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21274 * 120.00007 * 2 1 4 4 N 1.34778 * 120.00037 * 179.97438 * 2 1 3 5 5 C 1.39274 * 119.99928 * 174.17483 * 4 2 1 6 6 C 1.39485 * 120.55830 * 334.45415 * 5 4 2 7 7 C 1.38263 * 118.42968 * 179.97438 * 6 5 4 8 8 C 1.38784 * 119.45933 * 0.02562 * 7 6 5 9 9 N 1.31377 * 121.09875 * 359.71488 * 8 7 6 10 10 C 1.32847 * 121.71018 * 0.57086 * 9 8 7 11 11 C 1.47814 * 119.79356 * 179.70698 * 10 9 8 12 12 O 1.21562 * 119.99765 * 172.63603 * 11 10 9 13 13 N 1.34779 * 120.00012 * 352.36245 * 11 10 9 14 14 C 1.46924 * 120.62987 * 349.35796 * 13 11 10 15 15 C 1.52759 * 109.01156 * 233.58574 * 14 13 11 16 16 C 1.53039 * 109.38052 * 305.58968 * 15 14 13 17 17 C 1.53043 * 109.53816 * 61.24063 * 16 15 14 18 18 H 1.09004 * 109.49831 * 58.58668 * 17 16 15 19 19 C 1.50703 * 109.49852 * 178.67841 * 17 16 15 20 20 H 1.08008 * 119.99784 * 359.84253 * 19 17 16 21 21 C 1.37875 * 120.00070 * 179.83758 * 19 17 16 22 22 N 1.31510 * 120.00088 * 359.97438 * 21 19 17 23 23 Si 1.86801 * 119.99849 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47303 * 60.00225 * 23 21 19 25 25 H 1.48505 * 109.46775 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47099 * 300.00041 * 23 21 19 27 27 C 1.46930 * 120.62971 * 169.64346 * 13 11 10 28 28 H 1.08999 * 109.47134 * 269.99533 * 1 2 3 29 29 H 1.08999 * 109.47204 * 30.00266 * 1 2 3 30 30 H 1.09005 * 109.47045 * 149.99958 * 1 2 3 31 31 H 0.97003 * 119.99957 * 354.18158 * 4 2 1 32 32 H 1.07999 * 120.77898 * 0.02562 * 6 5 4 33 33 H 1.08003 * 120.26889 * 179.97438 * 7 6 5 34 34 H 1.08005 * 119.45113 * 179.97438 * 8 7 6 35 35 H 1.08997 * 109.59046 * 353.42446 * 14 13 11 36 36 H 1.09005 * 109.58166 * 113.84551 * 14 13 11 37 37 H 1.09001 * 109.56456 * 185.55621 * 15 14 13 38 38 H 1.09002 * 109.38669 * 65.51537 * 15 14 13 39 39 H 1.08998 * 109.46406 * 301.21662 * 16 15 14 40 40 H 1.09002 * 109.44747 * 181.25311 * 16 15 14 41 41 H 0.96999 * 120.00272 * 179.97438 * 22 21 19 42 42 H 1.08999 * 109.58310 * 246.15879 * 27 13 11 43 43 H 1.08995 * 109.58458 * 6.58036 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5682 -1.1704 -0.1219 6 6 4.2267 -0.1162 -0.7550 7 6 5.6051 -0.1642 -0.8515 8 6 6.2891 -1.2493 -0.3217 9 7 5.6490 -2.2292 0.2751 10 6 4.3254 -2.2319 0.3882 11 6 3.6482 -3.3596 1.0625 12 8 2.4548 -3.3051 1.2876 13 7 4.3528 -4.4506 1.4228 14 6 5.7318 -4.6400 0.9527 15 6 5.8470 -6.0101 0.2870 16 6 5.3595 -7.0886 1.2571 17 6 3.8896 -6.8396 1.6028 18 1 3.2945 -6.8486 0.6896 19 6 3.4014 -7.9205 2.5326 20 1 4.0715 -8.7083 2.8439 21 6 2.0994 -7.9037 2.9859 22 7 1.2836 -6.9442 2.6073 23 14 1.4945 -9.2432 4.1389 24 1 2.3072 -9.2307 5.3817 25 1 0.0694 -8.9985 4.4774 26 1 1.6261 -10.5647 3.4747 27 6 3.7542 -5.4762 2.2881 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6996 -2.0051 0.0861 32 1 3.6729 0.7181 -1.1594 33 1 6.1451 0.6359 -1.3361 34 1 7.3658 -1.2869 -0.3976 35 1 5.9820 -3.8624 0.2310 36 1 6.4166 -4.5895 1.7993 37 1 6.8871 -6.2014 0.0230 38 1 5.2338 -6.0272 -0.6140 39 1 5.9574 -7.0551 2.1679 40 1 5.4620 -8.0688 0.7914 41 1 0.3675 -6.9326 2.9258 42 1 4.2743 -5.4952 3.2457 43 1 2.6999 -5.2502 2.4470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869231677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:48 Heat of formation + Delta-G solvation = -36.520680 kcal Electronic energy + Delta-G solvation = -27166.109897 eV Core-core repulsion = 23404.066178 eV Total energy + Delta-G solvation = -3762.043719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.37118 -40.84168 -39.93194 -38.44229 -36.22787 -35.26560 -33.77317 -33.12271 -32.11768 -31.42148 -29.91619 -27.23017 -26.66329 -25.10023 -24.40560 -23.39218 -21.90233 -21.61295 -20.35000 -19.08208 -18.65487 -18.22331 -17.94073 -17.52211 -16.82358 -16.48169 -16.26978 -16.18626 -15.92597 -15.39883 -15.25413 -14.74144 -14.69765 -14.55720 -14.29654 -14.18009 -13.88981 -13.62812 -13.44781 -13.37514 -13.19965 -12.85208 -12.75637 -12.37146 -12.27142 -12.14482 -11.80819 -11.66321 -11.26739 -11.15162 -11.01056 -10.93363 -10.73684 -10.52181 -9.93120 -9.52213 -9.25783 -8.09958 -6.26991 -0.45317 0.10353 1.41551 1.42956 1.44015 1.51009 1.70913 1.99326 2.12503 2.42777 2.79107 3.11566 3.18663 3.59881 3.64770 3.81650 4.05077 4.15054 4.23176 4.26892 4.38659 4.43347 4.45428 4.55911 4.63898 4.79150 4.86111 4.89907 4.97639 5.04897 5.10032 5.10557 5.22503 5.27205 5.35405 5.38147 5.54913 5.60692 5.77561 5.90548 5.97472 6.23844 6.32824 6.55110 6.75487 6.83901 6.87469 7.18080 7.42548 8.93296 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.004211 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.001559 B = 6647.057768 C = 8308.602634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.508 3.492 3 O -0.563 6.563 4 N -0.658 5.658 5 C 0.146 3.854 6 C -0.110 4.110 7 C -0.105 4.105 8 C 0.075 3.925 9 N -0.439 5.439 10 C 0.020 3.980 11 C 0.552 3.448 12 O -0.577 6.577 13 N -0.585 5.585 14 C 0.079 3.921 15 C -0.127 4.127 16 C -0.106 4.106 17 C 0.041 3.959 18 H -0.013 1.013 19 C -0.539 4.539 20 H 0.060 0.940 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.957 3.043 24 H -0.269 1.269 25 H -0.287 1.287 26 H -0.269 1.269 27 C 0.123 3.877 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.426 0.574 32 H 0.158 0.842 33 H 0.187 0.813 34 H 0.210 0.790 35 H 0.153 0.847 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.261 0.739 42 H 0.035 0.965 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.236 14.505 -9.346 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.300 3.700 3 O -0.442 6.442 4 N -0.308 5.308 5 C 0.045 3.955 6 C -0.138 4.138 7 C -0.125 4.125 8 C -0.087 4.087 9 N -0.150 5.150 10 C -0.117 4.117 11 C 0.340 3.660 12 O -0.458 6.458 13 N -0.314 5.314 14 C -0.042 4.042 15 C -0.165 4.165 16 C -0.144 4.144 17 C 0.022 3.978 18 H 0.006 0.994 19 C -0.578 4.578 20 H 0.078 0.922 21 C -0.187 4.187 22 N -0.550 5.550 23 Si 0.782 3.218 24 H -0.194 1.194 25 H -0.212 1.212 26 H -0.194 1.194 27 C 0.002 3.998 28 H 0.126 0.874 29 H 0.134 0.866 30 H 0.118 0.882 31 H 0.270 0.730 32 H 0.176 0.824 33 H 0.205 0.795 34 H 0.226 0.774 35 H 0.169 0.831 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.165 14.553 -8.819 18.874 hybrid contribution -1.568 -0.781 0.672 1.876 sum 6.597 13.772 -8.147 17.308 Atomic orbital electron populations 1.21953 0.87177 1.06843 1.06476 1.21865 0.92793 0.81987 0.73401 1.90625 1.71491 1.32161 1.49926 1.44272 1.04923 1.12220 1.69402 1.18954 0.85002 0.95883 0.95685 1.22014 0.96281 0.97954 0.97521 1.22751 0.93052 0.99724 0.96980 1.23703 1.02627 0.88521 0.93852 1.67521 1.06363 1.26560 1.14602 1.20688 0.90897 0.96195 1.03931 1.18366 0.85921 0.82690 0.79004 1.90538 1.15540 1.81359 1.58403 1.48317 1.15826 1.19595 1.47651 1.22921 0.80316 0.99646 1.01331 1.21890 1.02071 0.94762 0.97783 1.21544 0.96241 0.98031 0.98580 1.18870 0.92781 0.91927 0.94255 0.99447 1.21475 0.96622 1.10370 1.29294 0.92159 1.25856 0.97094 0.97908 0.97823 1.70060 1.06124 1.33546 1.45290 0.85627 0.77076 0.79638 0.79422 1.19414 1.21219 1.19421 1.21814 0.99373 0.87898 0.90763 0.87418 0.86555 0.88215 0.72952 0.82413 0.79549 0.77383 0.83087 0.91673 0.88111 0.93726 0.92712 0.93071 0.93013 0.94648 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.31 71.24 0.73 -2.20 16 2 C 0.51 13.66 7.74 87.66 0.68 14.34 16 3 O -0.56 -17.42 14.35 -3.01 -0.04 -17.46 16 4 N -0.66 -20.10 4.82 -302.67 -1.46 -21.56 16 5 C 0.15 4.49 6.43 38.69 0.25 4.74 16 6 C -0.11 -2.63 8.80 22.58 0.20 -2.44 16 7 C -0.11 -1.69 10.10 22.41 0.23 -1.47 16 8 C 0.07 1.30 11.17 84.89 0.95 2.25 16 9 N -0.44 -11.79 6.16 -184.53 -1.14 -12.93 16 10 C 0.02 0.69 6.59 41.96 0.28 0.96 16 11 C 0.55 23.48 7.61 86.78 0.66 24.14 16 12 O -0.58 -27.66 13.28 -3.91 -0.05 -27.71 16 13 N -0.59 -25.11 2.98 -823.19 -2.45 -27.57 16 14 C 0.08 2.66 5.79 86.22 0.50 3.16 16 15 C -0.13 -4.19 6.06 30.53 0.19 -4.01 16 16 C -0.11 -4.34 5.11 30.62 0.16 -4.18 16 17 C 0.04 2.12 2.25 -11.46 -0.03 2.09 16 18 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 19 C -0.54 -30.08 8.56 25.60 0.22 -29.86 16 20 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 21 C 0.01 0.73 5.30 84.65 0.45 1.17 16 22 N -0.91 -54.68 11.39 21.45 0.24 -54.44 16 23 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 27 C 0.12 6.32 5.41 86.36 0.47 6.79 16 28 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.43 14.09 6.08 -92.71 -0.56 13.52 16 32 H 0.16 3.79 5.97 -2.91 -0.02 3.78 16 33 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.15 4.47 4.17 -54.66 -0.23 4.24 16 36 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.08 4.98 5.13 -2.39 -0.01 4.96 16 Total: -1.00 -75.20 346.03 3.32 -71.89 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.27 Total: 28.10 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 5.92 Total: 15.50 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -4.80 Total: -116.50 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.10 Total: -45.17 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -75.20 3.32 -71.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869231677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.365 kcal (2) G-P(sol) polarization free energy of solvation -75.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds