Wall clock time and date at job start Tue Mar 31 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99696 * 2 1 4 4 C 1.50707 * 109.46970 * 180.02562 * 3 2 1 5 5 C 1.29449 * 117.69031 * 0.02562 * 4 3 2 6 6 C 1.50330 * 123.64817 * 181.13647 * 5 4 3 7 7 N 1.47120 * 109.10556 * 348.54146 * 6 5 4 8 8 C 1.34773 * 121.53676 * 223.15801 * 7 6 5 9 9 O 1.21581 * 120.00174 * 180.23096 * 8 7 6 10 10 N 1.34777 * 119.99997 * 0.22990 * 8 7 6 11 11 C 1.39452 * 119.99998 * 174.35552 * 10 8 7 12 12 C 1.38648 * 119.64856 * 185.24382 * 11 10 8 13 13 C 1.40821 * 118.67178 * 179.71640 * 12 11 10 14 14 C 1.41552 * 120.99524 * 180.30197 * 13 12 11 15 15 H 1.07996 * 119.99963 * 213.99199 * 14 13 12 16 16 C 1.40028 * 120.00106 * 33.98956 * 14 13 12 17 17 N 1.30745 * 119.99834 * 356.06283 * 16 14 13 18 18 Si 1.86793 * 120.00000 * 176.05985 * 16 14 13 19 19 H 1.48500 * 109.47387 * 60.00168 * 18 16 14 20 20 H 1.48499 * 109.47066 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47112 * 299.99967 * 18 16 14 22 22 C 1.41160 * 118.00808 * 0.54293 * 13 12 11 23 23 C 1.36591 * 119.12982 * 359.73852 * 22 13 12 24 24 N 1.32076 * 121.25494 * 359.97436 * 23 22 13 25 25 C 1.47348 * 117.08799 * 43.37783 * 7 6 5 26 26 C 1.49968 * 117.69346 * 180.02562 * 4 3 2 27 27 H 1.09005 * 109.47742 * 59.99698 * 1 2 3 28 28 H 1.09005 * 109.47385 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47304 * 299.99813 * 1 2 3 30 30 H 1.09002 * 109.47268 * 60.00593 * 3 2 1 31 31 H 1.08999 * 109.47478 * 300.00200 * 3 2 1 32 32 H 1.07996 * 118.17801 * 0.85702 * 5 4 3 33 33 H 1.09003 * 109.51642 * 108.64971 * 6 5 4 34 34 H 1.08996 * 109.52057 * 228.83342 * 6 5 4 35 35 H 0.96997 * 119.99852 * 354.35443 * 10 8 7 36 36 H 1.07998 * 120.65900 * 359.97438 * 12 11 10 37 37 H 0.96998 * 119.99673 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.43775 * 179.75362 * 22 13 12 39 39 H 1.07999 * 119.37436 * 179.97438 * 23 22 13 40 40 H 1.08997 * 109.77631 * 178.40322 * 25 7 6 41 41 H 1.08994 * 109.77748 * 57.58871 * 25 7 6 42 42 H 1.09007 * 109.31459 * 281.28715 * 26 4 3 43 43 H 1.08990 * 109.31653 * 40.71752 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.0217 -0.0036 -0.0016 6 6 5.4997 -0.2773 0.0225 7 7 6.2258 0.9770 -0.2301 8 6 7.2877 1.0221 -1.0589 9 8 7.8699 2.0732 -1.2443 10 7 7.7042 -0.0980 -1.6821 11 6 8.7265 -0.0305 -2.6282 12 6 9.0751 -1.1658 -3.3435 13 6 10.1062 -1.0729 -4.2981 14 6 10.4975 -2.1996 -5.0605 15 1 11.5312 -2.3251 -5.3470 16 6 9.5443 -3.1514 -5.4431 17 7 8.3082 -3.0405 -5.0319 18 14 10.0389 -4.5793 -6.5410 19 1 11.0941 -5.3788 -5.8682 20 1 8.8554 -5.4383 -6.7991 21 1 10.5604 -4.0558 -7.8292 22 6 10.7414 0.1762 -4.4683 23 6 10.3330 1.2382 -3.7127 24 7 9.3580 1.1167 -2.8300 25 6 5.7447 2.1829 0.4666 26 6 4.3121 2.4552 -0.0001 27 1 -0.3635 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.3471 -0.8469 -0.0161 33 1 5.7805 -0.6749 0.9978 34 1 5.7486 -1.0020 -0.7526 35 1 7.2930 -0.9511 -1.4725 36 1 8.5631 -2.1017 -3.1750 37 1 7.6479 -3.6996 -5.2973 38 1 11.5397 0.2907 -5.1867 39 1 10.8165 2.1956 -3.8393 40 1 6.3814 3.0316 0.2172 41 1 5.7565 2.0159 1.5436 42 1 4.3336 2.8682 -1.0087 43 1 3.8451 3.1755 0.6714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871728623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:08 Heat of formation + Delta-G solvation = -3.517305 kcal Electronic energy + Delta-G solvation = -25961.886367 eV Core-core repulsion = 22201.273781 eV Total energy + Delta-G solvation = -3760.612585 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.23891 -38.87116 -38.08657 -36.80586 -34.30558 -33.80774 -33.16694 -31.12595 -30.44644 -28.82615 -27.92738 -26.20575 -25.91939 -24.15134 -23.52813 -21.87993 -21.39325 -19.79373 -18.37385 -17.74392 -17.20284 -16.63077 -16.19852 -16.00065 -15.56304 -15.30723 -15.17688 -14.77492 -14.31739 -14.14245 -13.95228 -13.64332 -13.31881 -13.23066 -12.97986 -12.81843 -12.54660 -12.44599 -12.31468 -11.87020 -11.84213 -11.39081 -11.24487 -11.17892 -10.85235 -10.74420 -10.26514 -10.13158 -10.11971 -9.69123 -9.54062 -9.34095 -8.90754 -8.43170 -7.83590 -7.71928 -6.96932 -6.65162 -4.60089 2.07575 2.71980 2.86534 2.91147 3.04815 3.07338 3.27356 3.43082 3.86146 3.91893 4.25652 4.54447 4.76285 4.85480 4.90809 4.98334 5.06409 5.10289 5.16015 5.20243 5.31538 5.34904 5.46197 5.52028 5.69120 5.72411 5.82344 5.93585 6.02697 6.37880 6.54025 6.61637 6.65205 6.71146 6.83357 7.00718 7.00973 7.19988 7.30203 7.44559 7.53731 7.93247 8.13183 8.37879 8.50287 8.76636 8.82130 9.18875 9.73577 10.20152 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.003197 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.022679 B = 8757.416127 C =10411.455485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.096 3.904 4 C -0.129 4.129 5 C -0.147 4.147 6 C 0.139 3.861 7 N -0.639 5.639 8 C 0.700 3.300 9 O -0.532 6.532 10 N -0.667 5.667 11 C 0.351 3.649 12 C -0.234 4.234 13 C 0.142 3.858 14 C -0.460 4.460 15 H 0.080 0.920 16 C 0.074 3.926 17 N -0.806 5.806 18 Si 0.918 3.082 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.276 4.276 23 C 0.114 3.886 24 N -0.547 5.547 25 C 0.135 3.865 26 C -0.095 4.095 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.131 0.869 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.403 0.597 36 H 0.136 0.864 37 H 0.279 0.721 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.256 2.926 10.612 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C 0.020 3.980 4 C -0.129 4.129 5 C -0.166 4.166 6 C 0.016 3.984 7 N -0.380 5.380 8 C 0.402 3.598 9 O -0.403 6.403 10 N -0.316 5.316 11 C 0.124 3.876 12 C -0.260 4.260 13 C 0.134 3.866 14 C -0.492 4.492 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.433 5.433 18 Si 0.743 3.257 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.299 4.299 23 C -0.040 4.040 24 N -0.266 5.266 25 C 0.011 3.989 26 C -0.133 4.133 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.240 0.760 36 H 0.153 0.847 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.210 4.200 10.962 18.432 hybrid contribution -0.345 -1.727 -1.025 2.038 sum -14.555 2.473 9.937 17.796 Atomic orbital electron populations 1.22738 0.80881 1.02875 0.99942 1.87841 1.19688 1.27757 1.95469 1.21372 0.91684 0.84632 1.00352 1.20541 0.93337 0.95594 1.03471 1.22275 0.95973 0.98337 1.00007 1.20502 0.89418 0.86817 1.01633 1.47499 1.31654 1.09745 1.49061 1.15906 0.80214 0.84776 0.78938 1.90992 1.56251 1.28633 1.64465 1.42701 1.37769 1.09349 1.41774 1.18053 0.88690 0.91445 0.89369 1.21766 1.06301 0.97411 1.00483 1.17606 0.89176 0.91766 0.88095 1.19480 0.95955 1.04164 1.29596 0.90223 1.25902 0.94493 0.98156 0.95756 1.69709 1.02666 1.33353 1.37533 0.86211 0.78836 0.80093 0.80604 1.18947 1.20362 1.19015 1.21781 1.07389 0.94485 1.06278 1.21502 0.93103 0.97247 0.92102 1.67211 1.11798 1.24819 1.22741 1.21393 0.93541 0.88569 0.95376 1.20662 0.94998 0.94867 1.02814 0.94017 0.89517 0.94104 0.92369 0.92398 0.85109 0.90416 0.89448 0.75998 0.84683 0.90961 0.87930 0.85966 0.88323 0.91541 0.90251 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.01 8.79 -35.23 -0.31 -4.32 16 3 C 0.10 0.90 6.23 36.01 0.22 1.12 16 4 C -0.13 -1.43 5.86 -100.99 -0.59 -2.03 16 5 C -0.15 -1.73 9.31 -35.78 -0.33 -2.06 16 6 C 0.14 1.71 6.50 -5.04 -0.03 1.68 16 7 N -0.64 -9.83 2.97 -179.76 -0.53 -10.37 16 8 C 0.70 14.31 8.30 -86.92 -0.72 13.59 16 9 O -0.53 -12.96 14.09 5.29 0.07 -12.88 16 10 N -0.67 -13.88 5.27 -15.86 -0.08 -13.96 16 11 C 0.35 8.78 7.42 -154.68 -1.15 7.63 16 12 C -0.23 -6.04 8.61 -38.45 -0.33 -6.37 16 13 C 0.14 3.79 5.58 -106.55 -0.59 3.19 16 14 C -0.46 -11.96 9.11 -37.65 -0.34 -12.31 16 15 H 0.08 1.98 7.85 -52.49 -0.41 1.56 16 16 C 0.07 1.80 5.43 -17.34 -0.09 1.71 16 17 N -0.81 -20.21 10.65 55.55 0.59 -19.62 16 18 Si 0.92 18.39 29.56 -169.99 -5.03 13.37 16 19 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 C -0.28 -6.85 9.85 -39.07 -0.38 -7.24 16 23 C 0.11 2.80 11.10 -18.04 -0.20 2.60 16 24 N -0.55 -14.37 7.86 -12.75 -0.10 -14.47 16 25 C 0.13 1.72 6.50 -3.52 -0.02 1.69 16 26 C -0.10 -1.02 5.97 -28.18 -0.17 -1.19 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.13 1.51 6.42 -52.49 -0.34 1.17 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.07 6.01 -51.93 -0.31 0.76 16 35 H 0.40 7.07 6.40 -40.82 -0.26 6.80 16 36 H 0.14 3.48 6.22 -52.49 -0.33 3.15 16 37 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 38 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 39 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 40 H 0.10 1.41 7.07 -51.93 -0.37 1.04 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -32.87 354.95 -9.47 -42.33 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.80 Total: 11.20 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -3.63 Total: 3.36 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.13 Total: -58.42 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.23 Total: -17.20 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.87 -9.47 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.817 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds