Wall clock time and date at job start Tue Mar 31 2020 11:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99696 * 2 1 4 4 C 1.50707 * 109.46970 * 180.02562 * 3 2 1 5 5 C 1.29449 * 117.69031 * 0.02562 * 4 3 2 6 6 C 1.50330 * 123.64817 * 181.13647 * 5 4 3 7 7 N 1.47120 * 109.10556 * 348.54146 * 6 5 4 8 8 C 1.34773 * 121.53676 * 223.15801 * 7 6 5 9 9 O 1.21581 * 120.00174 * 180.23096 * 8 7 6 10 10 N 1.34777 * 119.99997 * 0.22990 * 8 7 6 11 11 C 1.39452 * 119.99998 * 174.35552 * 10 8 7 12 12 C 1.38648 * 119.64856 * 185.24382 * 11 10 8 13 13 C 1.40821 * 118.67178 * 179.71640 * 12 11 10 14 14 C 1.41552 * 120.99524 * 180.30197 * 13 12 11 15 15 H 1.07996 * 119.99963 * 213.99199 * 14 13 12 16 16 C 1.40028 * 120.00106 * 33.98956 * 14 13 12 17 17 N 1.30745 * 119.99834 * 356.06283 * 16 14 13 18 18 Si 1.86793 * 120.00000 * 176.05985 * 16 14 13 19 19 H 1.48500 * 109.47387 * 60.00168 * 18 16 14 20 20 H 1.48499 * 109.47066 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47112 * 299.99967 * 18 16 14 22 22 C 1.41160 * 118.00808 * 0.54293 * 13 12 11 23 23 C 1.36591 * 119.12982 * 359.73852 * 22 13 12 24 24 N 1.32076 * 121.25494 * 359.97436 * 23 22 13 25 25 C 1.47348 * 117.08799 * 43.37783 * 7 6 5 26 26 C 1.49968 * 117.69346 * 180.02562 * 4 3 2 27 27 H 1.09005 * 109.47742 * 59.99698 * 1 2 3 28 28 H 1.09005 * 109.47385 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47304 * 299.99813 * 1 2 3 30 30 H 1.09002 * 109.47268 * 60.00593 * 3 2 1 31 31 H 1.08999 * 109.47478 * 300.00200 * 3 2 1 32 32 H 1.07996 * 118.17801 * 0.85702 * 5 4 3 33 33 H 1.09003 * 109.51642 * 108.64971 * 6 5 4 34 34 H 1.08996 * 109.52057 * 228.83342 * 6 5 4 35 35 H 0.96997 * 119.99852 * 354.35443 * 10 8 7 36 36 H 1.07998 * 120.65900 * 359.97438 * 12 11 10 37 37 H 0.96998 * 119.99673 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.43775 * 179.75362 * 22 13 12 39 39 H 1.07999 * 119.37436 * 179.97438 * 23 22 13 40 40 H 1.08997 * 109.77631 * 178.40322 * 25 7 6 41 41 H 1.08994 * 109.77748 * 57.58871 * 25 7 6 42 42 H 1.09007 * 109.31459 * 281.28715 * 26 4 3 43 43 H 1.08990 * 109.31653 * 40.71752 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.0217 -0.0036 -0.0016 6 6 5.4997 -0.2773 0.0225 7 7 6.2258 0.9770 -0.2301 8 6 7.2877 1.0221 -1.0589 9 8 7.8699 2.0732 -1.2443 10 7 7.7042 -0.0980 -1.6821 11 6 8.7265 -0.0305 -2.6282 12 6 9.0751 -1.1658 -3.3435 13 6 10.1062 -1.0729 -4.2981 14 6 10.4975 -2.1996 -5.0605 15 1 11.5312 -2.3251 -5.3470 16 6 9.5443 -3.1514 -5.4431 17 7 8.3082 -3.0405 -5.0319 18 14 10.0389 -4.5793 -6.5410 19 1 11.0941 -5.3788 -5.8682 20 1 8.8554 -5.4383 -6.7991 21 1 10.5604 -4.0558 -7.8292 22 6 10.7414 0.1762 -4.4683 23 6 10.3330 1.2382 -3.7127 24 7 9.3580 1.1167 -2.8300 25 6 5.7447 2.1829 0.4666 26 6 4.3121 2.4552 -0.0001 27 1 -0.3635 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.3471 -0.8469 -0.0161 33 1 5.7805 -0.6749 0.9978 34 1 5.7486 -1.0020 -0.7526 35 1 7.2930 -0.9511 -1.4725 36 1 8.5631 -2.1017 -3.1750 37 1 7.6479 -3.6996 -5.2973 38 1 11.5397 0.2907 -5.1867 39 1 10.8165 2.1956 -3.8393 40 1 6.3814 3.0316 0.2172 41 1 5.7565 2.0159 1.5436 42 1 4.3336 2.8682 -1.0087 43 1 3.8451 3.1755 0.6714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871728623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:07 Heat of formation + Delta-G solvation = -23.042293 kcal Electronic energy + Delta-G solvation = -25962.733034 eV Core-core repulsion = 22201.273781 eV Total energy + Delta-G solvation = -3761.459252 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.70367 -40.25260 -39.33827 -37.96538 -36.11094 -35.58152 -34.33068 -32.41205 -32.12473 -30.44195 -28.95081 -27.88497 -26.92905 -25.10089 -24.67676 -23.78380 -22.99332 -21.33196 -19.82908 -19.48931 -18.27705 -17.71742 -17.36714 -17.02073 -16.85311 -16.57386 -16.49515 -16.15175 -16.02605 -15.84030 -15.21127 -14.95732 -14.71105 -14.53939 -14.31383 -14.16279 -14.01288 -13.67772 -13.37950 -13.18396 -12.85120 -12.75044 -12.67910 -12.58438 -12.12725 -12.03314 -11.88723 -11.69924 -11.49465 -11.25522 -11.16991 -10.77862 -9.86239 -9.79830 -9.65590 -9.63278 -8.82418 -8.51540 -6.57979 0.81901 1.03013 1.19866 1.42429 1.51671 1.53710 1.58705 2.22307 2.24570 2.73699 2.85936 2.88430 3.65474 3.73488 3.90802 4.10552 4.13496 4.17299 4.32592 4.34572 4.46457 4.52218 4.56065 4.60579 4.64439 4.73257 4.79731 4.83358 4.86626 4.91823 4.93238 5.06261 5.11053 5.28181 5.41787 5.50230 5.54975 5.66086 5.80341 5.89984 6.01378 6.25010 6.29535 6.56522 6.78643 6.83477 6.88677 7.54655 7.86818 8.35921 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.003197 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.022679 B = 8757.416127 C =10411.455485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.096 3.904 4 C -0.130 4.130 5 C -0.159 4.159 6 C 0.137 3.863 7 N -0.630 5.630 8 C 0.696 3.304 9 O -0.577 6.577 10 N -0.662 5.662 11 C 0.348 3.652 12 C -0.250 4.250 13 C 0.113 3.887 14 C -0.488 4.488 15 H 0.084 0.916 16 C 0.033 3.967 17 N -0.828 5.828 18 Si 0.993 3.007 19 H -0.258 1.258 20 H -0.268 1.268 21 H -0.263 1.263 22 C -0.287 4.287 23 C 0.109 3.891 24 N -0.573 5.573 25 C 0.128 3.872 26 C -0.089 4.089 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.416 0.584 36 H 0.130 0.870 37 H 0.288 0.712 38 H 0.119 0.881 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.699 2.225 11.086 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.020 3.980 4 C -0.130 4.130 5 C -0.177 4.177 6 C 0.015 3.985 7 N -0.370 5.370 8 C 0.397 3.603 9 O -0.452 6.452 10 N -0.312 5.312 11 C 0.120 3.880 12 C -0.276 4.276 13 C 0.105 3.895 14 C -0.519 4.519 15 H 0.102 0.898 16 C -0.181 4.181 17 N -0.455 5.455 18 Si 0.813 3.187 19 H -0.182 1.182 20 H -0.193 1.193 21 H -0.188 1.188 22 C -0.310 4.310 23 C -0.044 4.044 24 N -0.292 5.292 25 C 0.006 3.994 26 C -0.127 4.127 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.255 0.745 36 H 0.148 0.852 37 H 0.099 0.901 38 H 0.137 0.863 39 H 0.167 0.833 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.716 3.490 11.488 19.777 hybrid contribution 0.006 -1.477 -1.110 1.848 sum -15.710 2.013 10.377 18.935 Atomic orbital electron populations 1.22907 0.79333 1.03780 1.00903 1.87799 1.21437 1.28295 1.95673 1.21412 0.90310 0.84696 1.01567 1.20773 0.94703 0.95301 1.02247 1.22228 0.95201 0.98891 1.01410 1.20716 0.89794 0.85288 1.02738 1.47541 1.30047 1.11895 1.47471 1.16081 0.81057 0.83850 0.79313 1.90950 1.58108 1.29975 1.66204 1.42615 1.37014 1.10464 1.41105 1.18253 0.89081 0.90953 0.89673 1.21724 1.07007 0.97525 1.01295 1.18048 0.89959 0.92897 0.88645 1.19781 0.96685 1.05032 1.30427 0.89818 1.26816 0.94156 1.00409 0.96762 1.69769 1.03587 1.34242 1.37921 0.85084 0.78831 0.76441 0.78314 1.18183 1.19259 1.18755 1.21968 1.07953 0.94148 1.06945 1.21971 0.92682 0.98368 0.91419 1.67336 1.12737 1.25419 1.23723 1.21655 0.94293 0.86859 0.96619 1.20626 0.93752 0.95586 1.02710 0.93518 0.88765 0.92642 0.90155 0.91997 0.84830 0.88061 0.89855 0.74469 0.85217 0.90112 0.86292 0.83263 0.90274 0.88802 0.91830 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -7.70 8.79 -148.98 -1.31 -9.00 16 3 C 0.10 1.57 6.23 71.24 0.44 2.01 16 4 C -0.13 -2.63 5.86 -15.13 -0.09 -2.72 16 5 C -0.16 -3.48 9.31 27.11 0.25 -3.23 16 6 C 0.14 3.21 6.50 85.40 0.56 3.76 16 7 N -0.63 -19.11 2.97 -840.89 -2.50 -21.61 16 8 C 0.70 28.88 8.30 179.06 1.49 30.37 16 9 O -0.58 -28.85 14.09 -3.97 -0.06 -28.91 16 10 N -0.66 -28.14 5.27 -322.37 -1.70 -29.84 16 11 C 0.35 17.88 7.42 132.76 0.98 18.86 16 12 C -0.25 -13.27 8.61 23.00 0.20 -13.07 16 13 C 0.11 6.16 5.58 -21.11 -0.12 6.04 16 14 C -0.49 -25.65 9.11 23.52 0.21 -25.44 16 15 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 16 C 0.03 1.62 5.43 85.29 0.46 2.08 16 17 N -0.83 -41.67 10.65 21.84 0.23 -41.44 16 18 Si 0.99 36.96 29.56 68.60 2.03 38.99 16 19 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 20 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 21 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 22 C -0.29 -14.47 9.85 22.60 0.22 -14.25 16 23 C 0.11 5.41 11.10 84.27 0.94 6.34 16 24 N -0.57 -30.75 7.86 -194.26 -1.53 -32.28 16 25 C 0.13 3.12 6.50 86.26 0.56 3.68 16 26 C -0.09 -1.74 5.97 29.66 0.18 -1.57 16 27 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 32 H 0.13 2.90 6.42 -2.91 -0.02 2.88 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 2.01 6.01 -2.39 -0.01 2.00 16 35 H 0.42 14.86 6.40 -92.71 -0.59 14.27 16 36 H 0.13 6.89 6.22 -2.91 -0.02 6.88 16 37 H 0.29 13.12 8.29 -92.71 -0.77 12.35 16 38 H 0.12 5.43 8.06 -2.91 -0.02 5.41 16 39 H 0.15 6.37 8.06 -2.91 -0.02 6.35 16 40 H 0.08 2.27 7.07 -2.39 -0.02 2.25 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -72.13 354.95 3.16 -68.98 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: 0.45 Total: 40.66 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 7.54 Total: 14.45 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -5.49 Total: -125.16 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.36 Total: -37.91 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -72.13 3.16 -68.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.933 kcal (2) G-P(sol) polarization free energy of solvation -72.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds