Wall clock time and date at job start Tue Mar 31 2020 11:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47359 * 37.73478 * 3 2 1 5 5 N 1.46503 * 109.47081 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99717 * 269.99510 * 5 4 3 7 7 C 1.53002 * 109.47142 * 270.00404 * 6 5 4 8 8 O 1.42891 * 109.47404 * 64.99963 * 7 6 5 9 9 C 1.42897 * 114.00301 * 179.97438 * 8 7 6 10 10 C 1.34770 * 120.00326 * 89.99916 * 5 4 3 11 11 O 1.21574 * 120.00224 * 179.97438 * 10 5 4 12 12 N 1.34779 * 120.00085 * 359.97438 * 10 5 4 13 13 C 1.39458 * 120.00150 * 185.00856 * 12 10 5 14 14 C 1.38646 * 119.64774 * 185.32293 * 13 12 10 15 15 C 1.40819 * 118.67702 * 179.72202 * 14 13 12 16 16 C 1.41540 * 120.99903 * 180.25076 * 15 14 13 17 17 H 1.07995 * 119.99868 * 153.79752 * 16 15 14 18 18 C 1.40033 * 120.00210 * 333.79134 * 16 15 14 19 19 N 1.30743 * 119.99633 * 350.09711 * 18 16 15 20 20 Si 1.86793 * 120.00042 * 170.09627 * 18 16 15 21 21 H 1.48497 * 109.47594 * 60.00369 * 20 18 16 22 22 H 1.48504 * 109.47288 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47100 * 299.99812 * 20 18 16 24 24 C 1.41166 * 118.00364 * 0.27133 * 15 14 13 25 25 C 1.36599 * 119.12543 * 0.02562 * 24 15 14 26 26 N 1.32067 * 121.25987 * 0.02562 * 25 24 15 27 27 H 4.44650 * 5.63379 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.47374 * 277.72729 * 3 2 1 29 29 H 1.09006 * 109.47234 * 157.73214 * 3 2 1 30 30 H 1.08991 * 109.47174 * 59.99566 * 4 3 2 31 31 H 1.08998 * 109.46923 * 299.99418 * 4 3 2 32 32 H 1.09005 * 109.46904 * 30.00212 * 6 5 4 33 33 H 1.08998 * 109.47315 * 149.99748 * 6 5 4 34 34 H 1.09004 * 109.47070 * 185.00071 * 7 6 5 35 35 H 1.09002 * 109.46775 * 304.99429 * 7 6 5 36 36 H 1.09005 * 109.47282 * 59.99987 * 9 8 7 37 37 H 1.08998 * 109.47661 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.47168 * 300.00212 * 9 8 7 39 39 H 0.97006 * 119.99592 * 5.00702 * 12 10 5 40 40 H 1.08001 * 120.66331 * 359.97438 * 14 13 12 41 41 H 0.97006 * 119.99957 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.43804 * 179.97438 * 24 15 14 43 43 H 1.08001 * 119.36634 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1399 -0.8828 5 7 4.6216 -1.1396 -0.8823 6 6 5.3542 -0.3628 -1.8854 7 6 5.6097 -1.2332 -3.1175 8 8 4.3636 -1.5654 -3.7328 9 6 4.4905 -2.3803 -4.8997 10 6 5.2953 -1.8538 0.0409 11 8 6.5110 -1.8539 0.0410 12 7 4.6213 -2.5680 0.9640 13 6 5.3145 -3.2223 1.9820 14 6 4.6267 -4.0443 2.8615 15 6 5.3479 -4.6997 3.8781 16 6 4.6962 -5.5541 4.7994 17 1 5.2451 -6.3520 5.2772 18 6 3.3398 -5.3647 5.0913 19 7 2.7239 -4.2916 4.6689 20 14 2.4104 -6.6454 6.0839 21 1 3.0466 -6.7956 7.4173 22 1 1.0001 -6.2123 6.2539 23 1 2.4453 -7.9466 5.3693 24 6 6.7402 -4.4786 3.9512 25 6 7.3296 -3.6456 3.0430 26 7 6.6221 -3.0463 2.1027 27 1 -1.0499 -0.0002 -0.0004 28 1 3.0094 -0.1374 1.0183 29 1 3.0089 0.9519 -0.3894 30 1 2.7931 -1.0018 -1.9010 31 1 2.7937 -2.0911 -0.4933 32 1 4.7649 0.5084 -2.1717 33 1 6.3063 -0.0360 -1.4675 34 1 6.2306 -0.6856 -3.8267 35 1 6.1217 -2.1473 -2.8167 36 1 4.9794 -3.3184 -4.6364 37 1 3.5012 -2.5878 -5.3075 38 1 5.0880 -1.8562 -5.6457 39 1 3.6540 -2.6269 0.9203 40 1 3.5598 -4.1825 2.7664 41 1 1.7842 -4.1605 4.8708 42 1 7.3314 -4.9609 4.7155 43 1 8.3945 -3.4734 3.0956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871734282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:23 Heat of formation + Delta-G solvation = 26.703757 kcal Electronic energy + Delta-G solvation = -26277.195489 eV Core-core repulsion = 22517.893387 eV Total energy + Delta-G solvation = -3759.302102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.15515 -38.39416 -37.66597 -35.97976 -34.45100 -33.80501 -33.61837 -30.78839 -30.45111 -29.18599 -28.07851 -26.35144 -25.95809 -23.89100 -23.30184 -21.89026 -21.10289 -19.26858 -18.22891 -17.99161 -17.54712 -16.49686 -16.36091 -15.80343 -15.43670 -15.32658 -14.86973 -14.55367 -14.31840 -14.15853 -14.14134 -13.76284 -13.44125 -13.03542 -12.82931 -12.58585 -12.40408 -12.25343 -12.02759 -11.93935 -11.67091 -11.40587 -11.18227 -11.14448 -10.88208 -10.41030 -10.26725 -10.13110 -10.08661 -9.80430 -9.71680 -9.49497 -9.35640 -8.48372 -7.94402 -7.69685 -6.99527 -6.71535 -4.60284 2.67546 2.74329 2.84103 2.85231 2.99351 3.02382 3.05342 3.27113 3.67815 3.86099 3.88128 4.17289 4.48627 4.73586 4.94605 4.99269 5.09531 5.15951 5.21524 5.30002 5.31352 5.45195 5.50250 5.64557 5.71682 5.72959 5.85816 5.92544 5.99744 6.02111 6.50661 6.63932 6.73843 6.83999 6.96815 7.03319 7.16516 7.26646 7.45421 7.52061 7.61196 7.88843 8.10907 8.36026 8.48958 8.75536 8.78603 9.17221 9.75084 10.12264 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.003766 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.690487 B = 7433.486290 C = 8731.867651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C -0.035 4.035 4 C 0.121 3.879 5 N -0.629 5.629 6 C 0.140 3.860 7 C 0.042 3.958 8 O -0.389 6.389 9 C 0.033 3.967 10 C 0.696 3.304 11 O -0.533 6.533 12 N -0.667 5.667 13 C 0.353 3.647 14 C -0.243 4.243 15 C 0.144 3.856 16 C -0.455 4.455 17 H 0.081 0.919 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.914 3.086 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.283 4.283 25 C 0.119 3.881 26 N -0.553 5.553 27 H 0.216 0.784 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.404 0.596 40 H 0.132 0.868 41 H 0.281 0.719 42 H 0.101 0.899 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 6.598 -13.238 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.180 4.180 3 C -0.073 4.073 4 C -0.003 4.003 5 N -0.368 5.368 6 C 0.016 3.984 7 C -0.035 4.035 8 O -0.308 6.308 9 C -0.064 4.064 10 C 0.397 3.603 11 O -0.404 6.404 12 N -0.316 5.316 13 C 0.127 3.873 14 C -0.269 4.269 15 C 0.135 3.865 16 C -0.487 4.487 17 H 0.099 0.901 18 C -0.142 4.142 19 N -0.420 5.420 20 Si 0.738 3.262 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.307 4.307 25 C -0.035 4.035 26 N -0.272 5.272 27 H 0.233 0.767 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.241 0.759 40 H 0.149 0.851 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.261 7.381 -13.794 15.981 hybrid contribution -1.504 -1.209 0.953 2.153 sum -4.765 6.171 -12.840 15.022 Atomic orbital electron populations 1.24854 0.95894 1.00766 1.01197 1.22892 0.94212 1.00574 1.00297 1.19232 0.84928 1.00800 1.02388 1.21396 0.80037 0.97672 1.01167 1.47160 1.05529 1.51630 1.32452 1.21309 0.98568 0.92652 0.85903 1.23103 0.86120 0.99730 0.94591 1.87847 1.29951 1.70669 1.42348 1.22695 1.02246 0.94043 0.87390 1.16044 0.85649 0.79280 0.79358 1.90990 1.10576 1.65499 1.73351 1.42757 1.09791 1.51591 1.27470 1.17991 0.89399 0.92292 0.87596 1.21621 1.01326 1.05665 0.98239 1.17561 0.90494 0.88986 0.89412 1.19546 0.94206 1.13498 1.21404 0.90133 1.25935 0.97797 0.95307 0.95186 1.69739 1.11768 1.23510 1.37031 0.86270 0.78254 0.81186 0.80442 1.18930 1.20282 1.18812 1.21684 0.96527 1.08086 1.04405 1.21462 0.97739 0.93564 0.90740 1.67176 1.05587 1.29059 1.25332 0.76711 0.89042 0.89262 0.88811 0.90774 0.90023 0.88093 0.92658 0.92479 0.94172 0.89895 0.94360 0.75944 0.85061 0.90793 0.88073 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.33 19.25 29.55 0.57 -1.76 16 2 C -0.18 -2.21 13.34 -37.13 -0.50 -2.71 16 3 C -0.04 -0.42 6.03 -29.52 -0.18 -0.60 16 4 C 0.12 1.49 4.99 -4.04 -0.02 1.47 16 5 N -0.63 -9.14 2.44 -179.43 -0.44 -9.58 16 6 C 0.14 1.68 5.81 -4.04 -0.02 1.66 16 7 C 0.04 0.49 6.28 37.16 0.23 0.73 16 8 O -0.39 -4.56 9.53 -35.23 -0.34 -4.89 16 9 C 0.03 0.30 11.01 101.05 1.11 1.41 16 10 C 0.70 13.60 8.23 -86.92 -0.72 12.89 16 11 O -0.53 -12.42 14.22 5.30 0.08 -12.34 16 12 N -0.67 -13.64 5.27 -15.87 -0.08 -13.72 16 13 C 0.35 8.73 7.41 -154.68 -1.15 7.58 16 14 C -0.24 -6.24 8.62 -38.46 -0.33 -6.57 16 15 C 0.14 3.82 5.60 -106.55 -0.60 3.22 16 16 C -0.46 -11.77 9.14 -37.65 -0.34 -12.12 16 17 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 18 C 0.08 1.84 5.31 -17.34 -0.09 1.75 16 19 N -0.79 -19.68 10.70 55.55 0.59 -19.09 16 20 Si 0.91 18.10 29.57 -169.99 -5.03 13.08 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 22 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.28 -7.01 9.85 -39.06 -0.38 -7.40 16 25 C 0.12 2.89 11.10 -18.04 -0.20 2.69 16 26 N -0.55 -14.29 7.90 -12.75 -0.10 -14.40 16 27 H 0.22 1.63 7.80 -54.10 -0.42 1.21 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.07 7.12 -51.93 -0.37 0.70 16 31 H 0.07 0.94 6.29 -51.93 -0.33 0.62 16 32 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.10 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.40 7.19 6.39 -40.82 -0.26 6.92 16 40 H 0.13 3.37 6.11 -52.49 -0.32 3.05 16 41 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 42 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 43 H 0.12 2.58 8.06 -52.49 -0.42 2.15 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -32.23 371.38 -8.19 -40.41 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -5.86 Total: 12.69 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.61 Total: 2.24 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.03 Total: -56.78 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.26 Total: -17.24 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.23 -8.19 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871734282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.117 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds