Wall clock time and date at job start Tue Mar 31 2020 11:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47359 * 37.73478 * 3 2 1 5 5 N 1.46503 * 109.47081 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99717 * 269.99510 * 5 4 3 7 7 C 1.53002 * 109.47142 * 270.00404 * 6 5 4 8 8 O 1.42891 * 109.47404 * 64.99963 * 7 6 5 9 9 C 1.42897 * 114.00301 * 179.97438 * 8 7 6 10 10 C 1.34770 * 120.00326 * 89.99916 * 5 4 3 11 11 O 1.21574 * 120.00224 * 179.97438 * 10 5 4 12 12 N 1.34779 * 120.00085 * 359.97438 * 10 5 4 13 13 C 1.39458 * 120.00150 * 185.00856 * 12 10 5 14 14 C 1.38646 * 119.64774 * 185.32293 * 13 12 10 15 15 C 1.40819 * 118.67702 * 179.72202 * 14 13 12 16 16 C 1.41540 * 120.99903 * 180.25076 * 15 14 13 17 17 H 1.07995 * 119.99868 * 153.79752 * 16 15 14 18 18 C 1.40033 * 120.00210 * 333.79134 * 16 15 14 19 19 N 1.30743 * 119.99633 * 350.09711 * 18 16 15 20 20 Si 1.86793 * 120.00042 * 170.09627 * 18 16 15 21 21 H 1.48497 * 109.47594 * 60.00369 * 20 18 16 22 22 H 1.48504 * 109.47288 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47100 * 299.99812 * 20 18 16 24 24 C 1.41166 * 118.00364 * 0.27133 * 15 14 13 25 25 C 1.36599 * 119.12543 * 0.02562 * 24 15 14 26 26 N 1.32067 * 121.25987 * 0.02562 * 25 24 15 27 27 H 4.44650 * 5.63379 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.47374 * 277.72729 * 3 2 1 29 29 H 1.09006 * 109.47234 * 157.73214 * 3 2 1 30 30 H 1.08991 * 109.47174 * 59.99566 * 4 3 2 31 31 H 1.08998 * 109.46923 * 299.99418 * 4 3 2 32 32 H 1.09005 * 109.46904 * 30.00212 * 6 5 4 33 33 H 1.08998 * 109.47315 * 149.99748 * 6 5 4 34 34 H 1.09004 * 109.47070 * 185.00071 * 7 6 5 35 35 H 1.09002 * 109.46775 * 304.99429 * 7 6 5 36 36 H 1.09005 * 109.47282 * 59.99987 * 9 8 7 37 37 H 1.08998 * 109.47661 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.47168 * 300.00212 * 9 8 7 39 39 H 0.97006 * 119.99592 * 5.00702 * 12 10 5 40 40 H 1.08001 * 120.66331 * 359.97438 * 14 13 12 41 41 H 0.97006 * 119.99957 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.43804 * 179.97438 * 24 15 14 43 43 H 1.08001 * 119.36634 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1399 -0.8828 5 7 4.6216 -1.1396 -0.8823 6 6 5.3542 -0.3628 -1.8854 7 6 5.6097 -1.2332 -3.1175 8 8 4.3636 -1.5654 -3.7328 9 6 4.4905 -2.3803 -4.8997 10 6 5.2953 -1.8538 0.0409 11 8 6.5110 -1.8539 0.0410 12 7 4.6213 -2.5680 0.9640 13 6 5.3145 -3.2223 1.9820 14 6 4.6267 -4.0443 2.8615 15 6 5.3479 -4.6997 3.8781 16 6 4.6962 -5.5541 4.7994 17 1 5.2451 -6.3520 5.2772 18 6 3.3398 -5.3647 5.0913 19 7 2.7239 -4.2916 4.6689 20 14 2.4104 -6.6454 6.0839 21 1 3.0466 -6.7956 7.4173 22 1 1.0001 -6.2123 6.2539 23 1 2.4453 -7.9466 5.3693 24 6 6.7402 -4.4786 3.9512 25 6 7.3296 -3.6456 3.0430 26 7 6.6221 -3.0463 2.1027 27 1 -1.0499 -0.0002 -0.0004 28 1 3.0094 -0.1374 1.0183 29 1 3.0089 0.9519 -0.3894 30 1 2.7931 -1.0018 -1.9010 31 1 2.7937 -2.0911 -0.4933 32 1 4.7649 0.5084 -2.1717 33 1 6.3063 -0.0360 -1.4675 34 1 6.2306 -0.6856 -3.8267 35 1 6.1217 -2.1473 -2.8167 36 1 4.9794 -3.3184 -4.6364 37 1 3.5012 -2.5878 -5.3075 38 1 5.0880 -1.8562 -5.6457 39 1 3.6540 -2.6269 0.9203 40 1 3.5598 -4.1825 2.7664 41 1 1.7842 -4.1605 4.8708 42 1 7.3314 -4.9609 4.7155 43 1 8.3945 -3.4734 3.0956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871734282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:22 Heat of formation + Delta-G solvation = 8.295495 kcal Electronic energy + Delta-G solvation = -26277.993731 eV Core-core repulsion = 22517.893387 eV Total energy + Delta-G solvation = -3760.100344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.67023 -40.04679 -38.75133 -37.22664 -36.17617 -35.52392 -34.75942 -32.42447 -31.78696 -30.60849 -29.45988 -27.90184 -27.15606 -25.04202 -24.47786 -23.78905 -22.73324 -20.84517 -19.57034 -19.21670 -19.00532 -17.80644 -17.45004 -17.13921 -16.97505 -16.52594 -16.14743 -16.03538 -15.90188 -15.61155 -15.38416 -15.15778 -14.72481 -14.58240 -14.31660 -14.23037 -13.85630 -13.25210 -13.19645 -13.08197 -12.86899 -12.79342 -12.71894 -12.62212 -12.08993 -11.99341 -11.91367 -11.50703 -11.35035 -11.21309 -11.17017 -11.00131 -10.62323 -9.92075 -9.72221 -9.60867 -8.83690 -8.56203 -6.56911 0.84089 1.02829 1.41546 1.50856 1.52959 1.58843 1.90284 1.94805 2.20868 2.25252 2.79406 2.85319 2.89031 3.58745 3.77496 3.89822 4.05518 4.09075 4.21725 4.25297 4.37710 4.43304 4.54383 4.56936 4.63928 4.74469 4.76341 4.82903 4.85471 4.90492 4.93854 5.01152 5.10538 5.17577 5.25043 5.49708 5.54975 5.66912 5.78486 5.96788 6.20544 6.25045 6.56379 6.72712 6.78300 6.83131 6.87056 7.56987 7.88899 8.30249 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.003766 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.690487 B = 7433.486290 C = 8731.867651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.218 4.218 3 C -0.027 4.027 4 C 0.126 3.874 5 N -0.616 5.616 6 C 0.134 3.866 7 C 0.049 3.951 8 O -0.402 6.402 9 C 0.028 3.972 10 C 0.693 3.307 11 O -0.574 6.574 12 N -0.663 5.663 13 C 0.351 3.649 14 C -0.261 4.261 15 C 0.116 3.884 16 C -0.485 4.485 17 H 0.084 0.916 18 C 0.037 3.963 19 N -0.817 5.817 20 Si 0.989 3.011 21 H -0.260 1.260 22 H -0.266 1.266 23 H -0.260 1.260 24 C -0.296 4.296 25 C 0.114 3.886 26 N -0.576 5.576 27 H 0.246 0.754 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.026 0.974 36 H 0.031 0.969 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.414 0.586 40 H 0.125 0.875 41 H 0.290 0.710 42 H 0.116 0.884 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.996 6.972 -13.973 16.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.219 4.219 3 C -0.064 4.064 4 C 0.002 3.998 5 N -0.353 5.353 6 C 0.011 3.989 7 C -0.029 4.029 8 O -0.321 6.321 9 C -0.068 4.068 10 C 0.395 3.605 11 O -0.449 6.449 12 N -0.313 5.313 13 C 0.124 3.876 14 C -0.287 4.287 15 C 0.107 3.893 16 C -0.515 4.515 17 H 0.102 0.898 18 C -0.179 4.179 19 N -0.443 5.443 20 Si 0.809 3.191 21 H -0.184 1.184 22 H -0.191 1.191 23 H -0.184 1.184 24 C -0.320 4.320 25 C -0.039 4.039 26 N -0.296 5.296 27 H 0.263 0.737 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.252 0.748 40 H 0.143 0.857 41 H 0.101 0.899 42 H 0.134 0.866 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.057 7.793 -14.578 17.287 hybrid contribution -1.018 -1.265 1.101 1.962 sum -6.076 6.528 -13.477 16.161 Atomic orbital electron populations 1.25690 0.96785 0.99167 0.99432 1.23126 0.94753 1.02104 1.01908 1.19072 0.85224 1.01197 1.00953 1.21490 0.78313 0.97706 1.02251 1.47157 1.06543 1.50244 1.31360 1.21574 0.98573 0.93453 0.85255 1.22983 0.86391 0.98522 0.94997 1.87807 1.29882 1.71109 1.43341 1.22861 1.03516 0.93547 0.86908 1.16200 0.85301 0.79334 0.79714 1.90951 1.12408 1.66926 1.74571 1.42676 1.10200 1.51431 1.26964 1.18190 0.89342 0.91960 0.88091 1.21580 1.01046 1.06979 0.99068 1.17990 0.91591 0.89649 0.90028 1.19859 0.95632 1.13978 1.22066 0.89780 1.26816 0.97980 0.97158 0.95968 1.69791 1.12496 1.24740 1.37246 0.85140 0.77076 0.78150 0.78686 1.18429 1.19052 1.18407 1.21872 0.96271 1.08659 1.05179 1.21928 0.99024 0.92881 0.90097 1.67305 1.06147 1.29968 1.26160 0.73722 0.91246 0.87652 0.87068 0.91538 0.86626 0.89099 0.89899 0.95557 0.95063 0.88368 0.92598 0.74762 0.85686 0.89864 0.86561 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.88 19.25 74.32 1.43 -2.45 16 2 C -0.22 -5.10 13.34 31.12 0.42 -4.68 16 3 C -0.03 -0.61 6.03 28.79 0.17 -0.43 16 4 C 0.13 2.98 4.99 86.38 0.43 3.41 16 5 N -0.62 -17.71 2.44 -839.86 -2.05 -19.76 16 6 C 0.13 3.07 5.81 86.38 0.50 3.57 16 7 C 0.05 1.08 6.28 71.98 0.45 1.53 16 8 O -0.40 -8.70 9.53 -148.98 -1.42 -10.12 16 9 C 0.03 0.46 11.01 113.37 1.25 1.71 16 10 C 0.69 27.70 8.23 179.06 1.47 29.17 16 11 O -0.57 -27.50 14.22 -3.95 -0.06 -27.55 16 12 N -0.66 -27.92 5.27 -322.38 -1.70 -29.62 16 13 C 0.35 17.93 7.41 132.76 0.98 18.91 16 14 C -0.26 -13.86 8.62 23.00 0.20 -13.67 16 15 C 0.12 6.30 5.60 -21.11 -0.12 6.19 16 16 C -0.48 -25.43 9.14 23.52 0.21 -25.22 16 17 H 0.08 4.20 7.87 -2.91 -0.02 4.17 16 18 C 0.04 1.79 5.31 85.29 0.45 2.24 16 19 N -0.82 -40.67 10.70 21.84 0.23 -40.43 16 20 Si 0.99 36.44 29.57 68.60 2.03 38.47 16 21 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 22 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 23 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 24 C -0.30 -14.96 9.85 22.61 0.22 -14.73 16 25 C 0.11 5.63 11.10 84.27 0.94 6.56 16 26 N -0.58 -30.55 7.90 -194.26 -1.53 -32.09 16 27 H 0.25 2.94 7.80 -4.42 -0.03 2.90 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.11 2.31 7.12 -2.39 -0.02 2.29 16 31 H 0.07 1.68 6.29 -2.39 -0.02 1.67 16 32 H 0.12 1.89 8.07 -2.38 -0.02 1.87 16 33 H 0.09 2.31 7.42 -2.39 -0.02 2.30 16 34 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.41 15.21 6.39 -92.70 -0.59 14.62 16 40 H 0.13 6.66 6.11 -2.91 -0.02 6.65 16 41 H 0.29 13.01 8.29 -92.70 -0.77 12.24 16 42 H 0.12 5.34 8.06 -2.91 -0.02 5.31 16 43 H 0.15 6.29 8.06 -2.91 -0.02 6.27 16 Total: -1.00 -70.97 371.38 4.96 -66.02 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: 0.43 Total: 42.98 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 9.02 Total: 12.11 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -5.04 Total: -121.90 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.48 Total: -37.68 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -70.97 4.96 -66.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871734282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.312 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds