Wall clock time and date at job start Tue Mar 31 2020 11:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47384 * 180.37160 * 3 2 1 5 5 H 1.09000 * 109.46855 * 305.00631 * 4 3 2 6 6 C 1.52998 * 109.47351 * 185.00006 * 4 3 2 7 7 C 1.52994 * 109.47140 * 175.00200 * 6 4 3 8 8 O 1.42896 * 109.47331 * 180.02562 * 7 6 4 9 9 C 1.42896 * 114.00270 * 180.02562 * 8 7 6 10 10 N 1.46508 * 109.46585 * 64.99955 * 4 3 2 11 11 C 1.34775 * 119.99754 * 275.00113 * 10 4 3 12 12 O 1.21574 * 120.00131 * 359.97438 * 11 10 4 13 13 N 1.34774 * 119.99315 * 180.02562 * 11 10 4 14 14 C 1.39459 * 120.00023 * 175.45744 * 13 11 10 15 15 C 1.38636 * 119.65141 * 186.28773 * 14 13 11 16 16 C 1.40826 * 118.67735 * 179.97438 * 15 14 13 17 17 C 1.41541 * 120.99973 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99884 * 201.14449 * 17 16 15 19 19 C 1.40031 * 120.00489 * 21.13013 * 17 16 15 20 20 N 1.30746 * 119.99679 * 12.11755 * 19 17 16 21 21 Si 1.86798 * 120.00451 * 192.11896 * 19 17 16 22 22 H 1.48504 * 109.46728 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47203 * 120.00009 * 21 19 17 24 24 H 1.48498 * 109.47156 * 240.00446 * 21 19 17 25 25 C 1.41166 * 118.00244 * 359.97438 * 16 15 14 26 26 C 1.36586 * 119.12581 * 0.02562 * 25 16 15 27 27 N 1.32065 * 121.26286 * 359.74441 * 26 25 16 28 28 H 4.44656 * 5.63375 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.47057 * 60.37097 * 3 2 1 30 30 H 1.08998 * 109.47353 * 300.37715 * 3 2 1 31 31 H 1.08997 * 109.46832 * 55.00278 * 6 4 3 32 32 H 1.08995 * 109.47061 * 295.00424 * 6 4 3 33 33 H 1.09007 * 109.47322 * 59.99750 * 7 6 4 34 34 H 1.09007 * 109.47027 * 300.00284 * 7 6 4 35 35 H 1.09006 * 109.46926 * 299.99452 * 9 8 7 36 36 H 1.09002 * 109.47675 * 59.99613 * 9 8 7 37 37 H 1.08995 * 109.47394 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99308 * 95.00523 * 10 4 3 39 39 H 0.97003 * 120.00514 * 355.45044 * 13 11 10 40 40 H 1.08007 * 120.66512 * 359.97438 * 15 14 13 41 41 H 0.96993 * 120.00086 * 179.97438 * 20 19 17 42 42 H 1.08005 * 120.43478 * 179.97438 * 25 16 15 43 43 H 1.08007 * 119.36657 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.4434 0.0094 5 1 2.7205 1.9877 -0.8289 6 6 4.6802 1.4467 -0.1164 7 6 5.1792 2.8883 -0.2323 8 8 6.6033 2.8914 -0.3504 9 6 7.1742 4.1964 -0.4646 10 7 2.7675 2.0900 1.2655 11 6 1.5499 2.6555 1.3843 12 8 0.7737 2.6295 0.4489 13 7 1.1934 3.2508 2.5397 14 6 -0.0277 3.9181 2.6324 15 6 -0.3306 4.6379 3.7779 16 6 -1.5691 5.3044 3.8495 17 6 -1.9290 6.0529 4.9956 18 1 -2.9684 6.2677 5.1958 19 6 -0.9376 6.5146 5.8701 20 7 0.3202 6.4659 5.5166 21 14 -1.4121 7.2002 7.5417 22 1 -2.8878 7.1448 7.6987 23 1 -0.7706 6.3909 8.6089 24 1 -0.9552 8.6092 7.6467 25 6 -2.4409 5.2036 2.7437 26 6 -2.0550 4.4708 1.6576 27 7 -0.8836 3.8620 1.6226 28 1 -1.0502 -0.0004 0.0002 29 1 3.0095 -0.5073 -0.8933 30 1 3.0096 -0.5188 0.8866 31 1 4.9726 0.8883 -1.0056 32 1 5.1185 0.9803 0.7659 33 1 4.8867 3.4467 0.6569 34 1 4.7408 3.3546 -1.1147 35 1 6.7770 4.6903 -1.3514 36 1 6.9236 4.7815 0.4202 37 1 8.2577 4.1128 -0.5495 38 1 3.3871 2.1110 2.0115 39 1 1.7859 3.2150 3.3068 40 1 0.3692 4.6866 4.5991 41 1 1.0069 6.7861 6.1222 42 1 -3.4007 5.6987 2.7568 43 1 -2.7192 4.3907 0.8096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871736736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:29 Heat of formation + Delta-G solvation = 17.977518 kcal Electronic energy + Delta-G solvation = -25949.710365 eV Core-core repulsion = 22190.029865 eV Total energy + Delta-G solvation = -3759.680500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.93266 -38.49587 -37.87784 -36.23136 -34.20933 -33.69442 -32.88165 -31.60060 -30.43447 -29.08247 -28.16802 -26.59219 -25.99259 -23.84602 -22.28646 -21.81757 -20.83284 -20.06214 -18.20637 -17.69287 -17.60120 -16.70503 -16.27378 -15.91548 -15.50159 -15.31308 -15.08365 -14.68868 -14.17447 -14.13489 -13.79878 -13.57646 -13.44948 -13.16801 -12.94234 -12.64292 -12.58690 -12.24638 -11.81304 -11.71688 -11.44483 -11.41332 -11.15602 -11.13294 -10.88502 -10.27137 -10.13139 -10.02112 -9.87227 -9.77885 -9.68774 -9.41653 -9.35398 -8.58144 -7.95494 -7.68044 -6.95594 -6.73805 -4.61899 2.72216 2.82265 3.00862 3.06210 3.06994 3.21154 3.27390 3.35057 3.60049 3.84115 3.98095 4.58919 4.66952 4.71905 4.78025 4.85966 5.06049 5.13285 5.16784 5.30052 5.33702 5.44838 5.48469 5.62329 5.66725 5.75266 5.76406 5.92824 6.08745 6.45520 6.58604 6.66842 6.79184 6.84345 6.92810 6.95672 7.19496 7.34109 7.48492 7.53947 7.90711 8.14711 8.18360 8.45867 8.51041 8.76187 8.77848 9.29368 9.78773 10.06910 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.003360 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.833208 B = 8331.698170 C = 9860.780668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.203 4.203 3 C -0.014 4.014 4 C 0.174 3.826 5 H 0.093 0.907 6 C -0.123 4.123 7 C 0.060 3.940 8 O -0.395 6.395 9 C 0.032 3.968 10 N -0.752 5.752 11 C 0.689 3.311 12 O -0.518 6.518 13 N -0.670 5.670 14 C 0.356 3.644 15 C -0.252 4.252 16 C 0.140 3.860 17 C -0.449 4.449 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.791 5.791 21 Si 0.914 3.086 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.287 4.287 26 C 0.118 3.882 27 N -0.550 5.550 28 H 0.207 0.793 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.390 0.610 39 H 0.401 0.599 40 H 0.138 0.862 41 H 0.280 0.720 42 H 0.100 0.900 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.801 -7.518 -5.541 15.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.203 4.203 3 C -0.052 4.052 4 C 0.068 3.932 5 H 0.111 0.889 6 C -0.161 4.161 7 C -0.016 4.016 8 O -0.314 6.314 9 C -0.065 4.065 10 N -0.411 5.411 11 C 0.389 3.611 12 O -0.387 6.387 13 N -0.317 5.317 14 C 0.130 3.870 15 C -0.278 4.278 16 C 0.131 3.869 17 C -0.481 4.481 18 H 0.099 0.901 19 C -0.143 4.143 20 N -0.418 5.418 21 Si 0.738 3.262 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.199 1.199 25 C -0.311 4.311 26 C -0.035 4.035 27 N -0.269 5.269 28 H 0.224 0.776 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.223 0.777 39 H 0.235 0.765 40 H 0.156 0.844 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.676 -8.140 -7.159 15.933 hybrid contribution -0.089 1.279 2.355 2.681 sum 11.587 -6.861 -4.805 14.298 Atomic orbital electron populations 1.24623 0.95706 0.98642 0.99612 1.22411 0.93959 1.02199 1.01703 1.19041 0.86285 0.97063 1.02838 1.20622 0.92419 0.92305 0.87828 0.88887 1.21783 0.93760 0.96364 1.04230 1.22537 0.80681 0.97519 1.00894 1.87819 1.20667 1.28170 1.94761 1.22731 0.98937 0.84661 1.00143 1.45308 1.16482 1.62948 1.16320 1.16057 0.82010 0.79092 0.83964 1.91033 1.49811 1.60250 1.37611 1.42566 1.19812 1.56026 1.13327 1.17984 0.85024 0.92077 0.91923 1.21780 1.02387 1.04966 0.98637 1.17580 0.90092 0.87997 0.91210 1.19646 0.94621 1.28802 1.05008 0.90077 1.25974 0.94447 0.94033 0.99886 1.69750 1.01155 1.35244 1.35603 0.86170 0.80232 0.78821 0.80991 1.18325 1.19675 1.19880 1.21638 1.02688 1.10077 0.96659 1.21450 0.92112 0.93754 0.96231 1.67217 1.04028 1.26945 1.28720 0.77595 0.89351 0.89990 0.89358 0.90302 0.92751 0.93040 0.94050 0.93921 0.89721 0.77699 0.76451 0.84438 0.90934 0.88227 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 17.91 29.55 0.53 -2.34 16 2 C -0.20 -3.21 11.17 -37.12 -0.41 -3.62 16 3 C -0.01 -0.16 5.39 -29.52 -0.16 -0.32 16 4 C 0.17 2.01 2.24 -67.93 -0.15 1.86 16 5 H 0.09 1.31 7.57 -51.93 -0.39 0.91 16 6 C -0.12 -1.07 5.12 -26.74 -0.14 -1.21 16 7 C 0.06 0.61 5.83 37.15 0.22 0.83 16 8 O -0.40 -4.23 10.70 -35.23 -0.38 -4.61 16 9 C 0.03 0.27 11.01 101.05 1.11 1.38 16 10 N -0.75 -10.00 4.50 -58.67 -0.26 -10.27 16 11 C 0.69 13.02 7.84 -86.92 -0.68 12.34 16 12 O -0.52 -11.71 11.45 5.30 0.06 -11.65 16 13 N -0.67 -13.25 5.39 -15.87 -0.09 -13.33 16 14 C 0.36 8.68 7.42 -154.68 -1.15 7.53 16 15 C -0.25 -6.42 8.67 -38.46 -0.33 -6.75 16 16 C 0.14 3.69 5.65 -106.55 -0.60 3.09 16 17 C -0.45 -11.57 9.15 -37.65 -0.34 -11.92 16 18 H 0.08 2.01 7.88 -52.48 -0.41 1.59 16 19 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 20 N -0.79 -19.34 10.50 55.55 0.58 -18.76 16 21 Si 0.91 17.89 29.58 -169.99 -5.03 12.86 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 C -0.29 -7.10 9.85 -39.07 -0.38 -7.48 16 26 C 0.12 2.87 11.10 -18.05 -0.20 2.67 16 27 N -0.55 -14.07 7.86 -12.76 -0.10 -14.17 16 28 H 0.21 3.18 7.80 -54.08 -0.42 2.76 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.58 7.75 -51.93 -0.40 0.17 16 34 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.39 4.10 8.62 -40.82 -0.35 3.74 16 39 H 0.40 6.59 8.72 -40.82 -0.36 6.24 16 40 H 0.14 3.49 5.81 -52.48 -0.30 3.18 16 41 H 0.28 6.16 8.29 -40.82 -0.34 5.82 16 42 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 43 H 0.12 2.55 8.06 -52.48 -0.42 2.13 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -32.85 368.65 -8.45 -41.30 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -6.01 Total: 15.31 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -2.79 Total: -2.25 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.13 Total: -56.52 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.32 Total: -16.26 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.85 -8.45 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871736736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.276 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds