Wall clock time and date at job start Tue Mar 31 2020 11:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47384 * 180.37160 * 3 2 1 5 5 H 1.09000 * 109.46855 * 305.00631 * 4 3 2 6 6 C 1.52998 * 109.47351 * 185.00006 * 4 3 2 7 7 C 1.52994 * 109.47140 * 175.00200 * 6 4 3 8 8 O 1.42896 * 109.47331 * 180.02562 * 7 6 4 9 9 C 1.42896 * 114.00270 * 180.02562 * 8 7 6 10 10 N 1.46508 * 109.46585 * 64.99955 * 4 3 2 11 11 C 1.34775 * 119.99754 * 275.00113 * 10 4 3 12 12 O 1.21574 * 120.00131 * 359.97438 * 11 10 4 13 13 N 1.34774 * 119.99315 * 180.02562 * 11 10 4 14 14 C 1.39459 * 120.00023 * 175.45744 * 13 11 10 15 15 C 1.38636 * 119.65141 * 186.28773 * 14 13 11 16 16 C 1.40826 * 118.67735 * 179.97438 * 15 14 13 17 17 C 1.41541 * 120.99973 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99884 * 201.14449 * 17 16 15 19 19 C 1.40031 * 120.00489 * 21.13013 * 17 16 15 20 20 N 1.30746 * 119.99679 * 12.11755 * 19 17 16 21 21 Si 1.86798 * 120.00451 * 192.11896 * 19 17 16 22 22 H 1.48504 * 109.46728 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47203 * 120.00009 * 21 19 17 24 24 H 1.48498 * 109.47156 * 240.00446 * 21 19 17 25 25 C 1.41166 * 118.00244 * 359.97438 * 16 15 14 26 26 C 1.36586 * 119.12581 * 0.02562 * 25 16 15 27 27 N 1.32065 * 121.26286 * 359.74441 * 26 25 16 28 28 H 4.44656 * 5.63375 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.47057 * 60.37097 * 3 2 1 30 30 H 1.08998 * 109.47353 * 300.37715 * 3 2 1 31 31 H 1.08997 * 109.46832 * 55.00278 * 6 4 3 32 32 H 1.08995 * 109.47061 * 295.00424 * 6 4 3 33 33 H 1.09007 * 109.47322 * 59.99750 * 7 6 4 34 34 H 1.09007 * 109.47027 * 300.00284 * 7 6 4 35 35 H 1.09006 * 109.46926 * 299.99452 * 9 8 7 36 36 H 1.09002 * 109.47675 * 59.99613 * 9 8 7 37 37 H 1.08995 * 109.47394 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99308 * 95.00523 * 10 4 3 39 39 H 0.97003 * 120.00514 * 355.45044 * 13 11 10 40 40 H 1.08007 * 120.66512 * 359.97438 * 15 14 13 41 41 H 0.96993 * 120.00086 * 179.97438 * 20 19 17 42 42 H 1.08005 * 120.43478 * 179.97438 * 25 16 15 43 43 H 1.08007 * 119.36657 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.4434 0.0094 5 1 2.7205 1.9877 -0.8289 6 6 4.6802 1.4467 -0.1164 7 6 5.1792 2.8883 -0.2323 8 8 6.6033 2.8914 -0.3504 9 6 7.1742 4.1964 -0.4646 10 7 2.7675 2.0900 1.2655 11 6 1.5499 2.6555 1.3843 12 8 0.7737 2.6295 0.4489 13 7 1.1934 3.2508 2.5397 14 6 -0.0277 3.9181 2.6324 15 6 -0.3306 4.6379 3.7779 16 6 -1.5691 5.3044 3.8495 17 6 -1.9290 6.0529 4.9956 18 1 -2.9684 6.2677 5.1958 19 6 -0.9376 6.5146 5.8701 20 7 0.3202 6.4659 5.5166 21 14 -1.4121 7.2002 7.5417 22 1 -2.8878 7.1448 7.6987 23 1 -0.7706 6.3909 8.6089 24 1 -0.9552 8.6092 7.6467 25 6 -2.4409 5.2036 2.7437 26 6 -2.0550 4.4708 1.6576 27 7 -0.8836 3.8620 1.6226 28 1 -1.0502 -0.0004 0.0002 29 1 3.0095 -0.5073 -0.8933 30 1 3.0096 -0.5188 0.8866 31 1 4.9726 0.8883 -1.0056 32 1 5.1185 0.9803 0.7659 33 1 4.8867 3.4467 0.6569 34 1 4.7408 3.3546 -1.1147 35 1 6.7770 4.6903 -1.3514 36 1 6.9236 4.7815 0.4202 37 1 8.2577 4.1128 -0.5495 38 1 3.3871 2.1110 2.0115 39 1 1.7859 3.2150 3.3068 40 1 0.3692 4.6866 4.5991 41 1 1.0069 6.7861 6.1222 42 1 -3.4007 5.6987 2.7568 43 1 -2.7192 4.3907 0.8096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871736736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:28 Heat of formation + Delta-G solvation = -3.054143 kcal Electronic energy + Delta-G solvation = -25950.622366 eV Core-core repulsion = 22190.029865 eV Total energy + Delta-G solvation = -3760.592501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.41871 -40.00650 -38.92167 -37.42243 -36.01603 -35.39105 -34.09129 -32.75380 -32.28867 -30.32181 -29.66775 -27.90799 -27.31453 -24.84773 -23.82032 -23.56315 -22.02184 -21.58418 -19.66542 -19.37389 -18.89096 -17.82222 -17.34960 -17.17005 -16.89822 -16.52478 -16.21985 -16.03190 -15.98644 -15.75369 -15.06543 -14.90226 -14.64688 -14.54189 -14.30334 -14.17231 -13.89465 -13.61598 -13.13095 -12.85064 -12.69204 -12.62151 -12.54074 -12.16424 -12.02792 -11.95309 -11.86343 -11.49661 -11.34409 -11.16214 -11.01104 -10.86770 -10.62868 -9.92041 -9.80379 -9.55560 -8.78059 -8.56647 -6.56723 0.88743 1.02891 1.41301 1.55632 1.58101 1.71891 2.04311 2.10682 2.20336 2.43587 2.78704 2.87091 3.25656 3.65181 3.81737 3.97561 4.06312 4.15147 4.21978 4.38794 4.42115 4.52382 4.56610 4.64370 4.74619 4.79222 4.85526 4.88874 4.89830 4.95775 5.05249 5.13413 5.18506 5.28652 5.29316 5.54141 5.66337 5.71393 5.89962 6.03759 6.18819 6.30714 6.60807 6.82701 6.85581 6.95350 7.08587 7.74716 7.98307 8.27521 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.003360 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.833208 B = 8331.698170 C = 9860.780668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.196 4.196 3 C -0.017 4.017 4 C 0.178 3.822 5 H 0.067 0.933 6 C -0.108 4.108 7 C 0.058 3.942 8 O -0.406 6.406 9 C 0.025 3.975 10 N -0.731 5.731 11 C 0.686 3.314 12 O -0.556 6.556 13 N -0.665 5.665 14 C 0.355 3.645 15 C -0.270 4.270 16 C 0.111 3.889 17 C -0.479 4.479 18 H 0.082 0.918 19 C 0.037 3.963 20 N -0.812 5.812 21 Si 0.990 3.010 22 H -0.259 1.259 23 H -0.261 1.261 24 H -0.266 1.266 25 C -0.301 4.301 26 C 0.113 3.887 27 N -0.572 5.572 28 H 0.205 0.795 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.102 0.898 38 H 0.407 0.593 39 H 0.416 0.584 40 H 0.135 0.865 41 H 0.291 0.709 42 H 0.112 0.888 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.916 -7.978 -4.667 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.196 4.196 3 C -0.054 4.054 4 C 0.072 3.928 5 H 0.085 0.915 6 C -0.146 4.146 7 C -0.018 4.018 8 O -0.326 6.326 9 C -0.071 4.071 10 N -0.390 5.390 11 C 0.385 3.615 12 O -0.429 6.429 13 N -0.314 5.314 14 C 0.128 3.872 15 C -0.296 4.296 16 C 0.102 3.898 17 C -0.510 4.510 18 H 0.100 0.900 19 C -0.180 4.180 20 N -0.438 5.438 21 Si 0.810 3.190 22 H -0.183 1.183 23 H -0.186 1.186 24 H -0.190 1.190 25 C -0.326 4.326 26 C -0.041 4.041 27 N -0.292 5.292 28 H 0.222 0.778 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.120 0.880 38 H 0.243 0.757 39 H 0.252 0.748 40 H 0.152 0.848 41 H 0.102 0.898 42 H 0.130 0.870 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.864 -8.629 -6.287 17.499 hybrid contribution -0.656 1.434 2.023 2.565 sum 13.208 -7.195 -4.264 15.633 Atomic orbital electron populations 1.25021 0.96706 1.00396 1.01633 1.23432 0.95455 1.00679 1.00066 1.19345 0.83362 0.97128 1.05604 1.20712 0.94360 0.91925 0.85768 0.91525 1.21681 0.90941 0.95807 1.06180 1.22542 0.80756 0.98394 1.00156 1.87791 1.20632 1.29339 1.94790 1.22899 0.99976 0.83935 1.00283 1.45146 1.14633 1.61488 1.17713 1.16249 0.83181 0.79012 0.83030 1.91013 1.51490 1.61675 1.38693 1.42484 1.18750 1.55632 1.14526 1.18187 0.86098 0.91676 0.91280 1.21762 1.02523 1.06140 0.99182 1.18012 0.90988 0.88648 0.92122 1.19923 0.95290 1.29840 1.05955 0.90032 1.26835 0.94080 0.93813 1.03242 1.69776 1.02129 1.34840 1.37082 0.85040 0.79804 0.78312 0.75855 1.18298 1.18582 1.19027 1.21811 1.03257 1.10810 0.96677 1.21869 0.92250 0.93085 0.96851 1.67349 1.04717 1.27779 1.29335 0.77760 0.85982 0.87581 0.87278 0.88286 0.93563 0.93928 0.93803 0.93920 0.87959 0.75658 0.74772 0.84770 0.89779 0.86983 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.71 17.91 74.32 1.33 -6.37 16 2 C -0.20 -6.08 11.17 31.13 0.35 -5.73 16 3 C -0.02 -0.33 5.39 28.79 0.16 -0.18 16 4 C 0.18 3.71 2.24 44.99 0.10 3.82 16 5 H 0.07 1.81 7.57 -2.39 -0.02 1.80 16 6 C -0.11 -1.52 5.12 30.59 0.16 -1.37 16 7 C 0.06 1.07 5.83 71.98 0.42 1.49 16 8 O -0.41 -7.79 10.70 -148.98 -1.59 -9.38 16 9 C 0.03 0.38 11.01 113.37 1.25 1.63 16 10 N -0.73 -18.29 4.50 -457.81 -2.06 -20.35 16 11 C 0.69 25.77 7.84 179.06 1.40 27.17 16 12 O -0.56 -25.55 11.45 -3.95 -0.05 -25.59 16 13 N -0.66 -26.40 5.39 -322.38 -1.74 -28.14 16 14 C 0.36 17.67 7.42 132.76 0.98 18.65 16 15 C -0.27 -14.10 8.67 23.00 0.20 -13.90 16 16 C 0.11 5.99 5.65 -21.11 -0.12 5.88 16 17 C -0.48 -25.06 9.15 23.52 0.22 -24.84 16 18 H 0.08 4.10 7.88 -2.91 -0.02 4.08 16 19 C 0.04 1.75 5.31 85.29 0.45 2.20 16 20 N -0.81 -39.57 10.50 21.84 0.23 -39.34 16 21 Si 0.99 35.93 29.58 68.60 2.03 37.96 16 22 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 23 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 24 H -0.27 -9.26 7.11 99.48 0.71 -8.56 16 25 C -0.30 -15.30 9.85 22.60 0.22 -15.08 16 26 C 0.11 5.58 11.10 84.27 0.94 6.52 16 27 N -0.57 -29.91 7.86 -194.27 -1.53 -31.44 16 28 H 0.21 6.77 7.80 -4.41 -0.03 6.74 16 29 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 0.91 7.75 -2.38 -0.02 0.89 16 34 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.41 7.56 8.62 -92.71 -0.80 6.76 16 39 H 0.42 13.51 8.72 -92.71 -0.81 12.70 16 40 H 0.13 6.96 5.81 -2.91 -0.02 6.94 16 41 H 0.29 12.58 8.29 -92.71 -0.77 11.81 16 42 H 0.11 5.21 8.06 -2.91 -0.02 5.19 16 43 H 0.14 6.18 8.06 -2.91 -0.02 6.16 16 Total: -1.00 -72.90 368.65 2.78 -70.12 By element: Atomic # 1 Polarization: 46.85 SS G_CDS: -0.57 Total: 46.28 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 8.05 Total: -0.12 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -5.10 Total: -119.27 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -1.64 Total: -34.98 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.96 kcal Total: -72.90 2.78 -70.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871736736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.070 kcal (2) G-P(sol) polarization free energy of solvation -72.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds