Wall clock time and date at job start Tue Mar 31 2020 11:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34227 * 117.00313 * 2 1 4 4 O 1.20831 * 119.99897 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00244 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46613 * 60.00364 * 5 3 2 7 7 N 1.46905 * 109.47140 * 180.02562 * 5 3 2 8 8 C 1.46902 * 110.99800 * 275.00279 * 7 5 3 9 9 C 1.53006 * 109.46626 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 8 7 11 11 S 1.81009 * 109.46965 * 179.97438 * 10 9 8 12 12 C 1.76195 * 99.99997 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99978 * 0.02562 * 12 11 10 14 14 C 1.38799 * 119.99985 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99674 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00231 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47102 * 90.00382 * 16 14 12 18 18 H 1.48500 * 109.47585 * 210.00423 * 16 14 12 19 19 H 1.48506 * 109.47219 * 330.00545 * 16 14 12 20 20 C 1.52995 * 109.47547 * 300.00409 * 5 3 2 21 21 C 1.53178 * 109.54320 * 179.82010 * 20 5 3 22 22 C 1.53110 * 109.15585 * 183.24116 * 21 20 5 23 23 O 1.42906 * 109.48701 * 57.47418 * 22 21 20 24 24 C 1.42905 * 114.09786 * 298.88898 * 23 22 21 25 25 C 1.53092 * 109.41249 * 61.16055 * 24 23 22 26 26 H 1.09004 * 109.47305 * 59.99555 * 1 2 3 27 27 H 1.09004 * 109.47295 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46841 * 299.99821 * 1 2 3 29 29 H 1.00891 * 110.99988 * 38.95694 * 7 5 3 30 30 H 1.09000 * 109.47263 * 60.00269 * 8 7 5 31 31 H 1.09001 * 109.47582 * 299.99548 * 8 7 5 32 32 H 1.08993 * 109.46955 * 300.00347 * 9 8 7 33 33 H 1.09000 * 109.47050 * 60.00176 * 9 8 7 34 34 H 1.08993 * 109.47839 * 299.99931 * 10 9 8 35 35 H 1.09000 * 109.47160 * 60.00369 * 10 9 8 36 36 H 0.97009 * 119.99706 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.54429 * 299.99755 * 20 5 3 38 38 H 1.09001 * 109.52209 * 303.05381 * 21 20 5 39 39 H 1.08997 * 109.52671 * 63.25208 * 21 20 5 40 40 H 1.09001 * 109.40418 * 297.49587 * 22 21 20 41 41 H 1.08998 * 109.48690 * 177.50188 * 22 21 20 42 42 H 1.08993 * 109.47914 * 301.17655 * 24 23 22 43 43 H 1.08999 * 109.47937 * 181.13875 * 24 23 22 44 44 H 1.09006 * 109.52016 * 182.48559 * 25 24 23 45 45 H 1.08997 * 109.52877 * 62.29654 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9563 0.7805 -0.8892 7 7 3.9828 2.6835 0.0011 8 6 4.0179 3.2226 -1.3650 9 6 4.4544 4.6885 -1.3237 10 6 4.4916 5.2497 -2.7465 11 16 5.0072 6.9841 -2.6977 12 6 4.9635 7.3648 -4.4175 13 1 4.6752 6.6073 -5.1311 14 6 5.2988 8.6387 -4.8550 15 7 5.6498 9.5622 -3.9851 16 14 5.2519 9.0426 -6.6781 17 1 3.9015 9.5436 -7.0395 18 1 6.2642 10.0862 -6.9803 19 1 5.5526 7.8190 -7.4642 20 6 4.1129 0.5814 1.2501 21 6 5.6429 0.6567 1.2500 22 6 6.1837 -0.1090 2.4605 23 8 5.7217 -1.4605 2.4149 24 6 4.2996 -1.5930 2.4612 25 6 3.6833 -0.8889 1.2495 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.3828 3.2378 0.5932 30 1 3.0250 3.1519 -1.8091 31 1 4.7255 2.6492 -1.9639 32 1 3.7466 5.2616 -0.7249 33 1 5.4472 4.7596 -0.8794 34 1 5.1996 4.6766 -3.3449 35 1 3.4989 5.1786 -3.1912 36 1 5.8845 10.4524 -4.2909 37 1 3.7237 1.0748 2.1406 38 1 6.0295 0.2086 0.3347 39 1 5.9563 1.6991 1.3070 40 1 5.8304 0.3652 3.3762 41 1 7.2734 -0.0965 2.4415 42 1 3.9218 -1.1382 3.3769 43 1 4.0321 -2.6495 2.4426 44 1 2.5964 -0.9508 1.3062 45 1 4.0291 -1.3692 0.3342 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880335002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:14 Heat of formation + Delta-G solvation = -152.513301 kcal Electronic energy + Delta-G solvation = -24583.009727 eV Core-core repulsion = 20919.087391 eV Total energy + Delta-G solvation = -3663.922336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17259 -39.45862 -37.51879 -36.31724 -34.59812 -32.42641 -31.90505 -31.33368 -28.89025 -27.28704 -25.64301 -24.47906 -24.05835 -23.37617 -21.34207 -20.93756 -20.25916 -18.13933 -17.49579 -17.33689 -16.96221 -16.20080 -16.09032 -15.49530 -15.27699 -14.93068 -14.80828 -14.77033 -14.19036 -13.94485 -13.75561 -13.49645 -13.31709 -12.82311 -12.65381 -12.58533 -12.34007 -12.28357 -11.72486 -11.57373 -11.37910 -11.30790 -11.18920 -11.06761 -10.90090 -10.84144 -10.73937 -10.61270 -10.49213 -10.41577 -9.78537 -9.51418 -9.04547 -8.80894 -8.28647 -6.50915 -6.21410 -3.91361 1.84631 2.38190 3.22180 3.22883 3.29826 3.51290 3.64300 3.83918 4.22236 4.23954 4.45612 4.56073 4.62072 4.77303 4.81307 4.85339 4.88700 4.98375 5.09852 5.14506 5.18963 5.23085 5.28502 5.36187 5.40605 5.44022 5.48823 5.52317 5.64758 5.71380 5.85283 5.90618 5.97444 6.04231 6.06312 6.08012 6.32604 6.58982 6.61517 6.82355 6.95222 7.09352 7.40413 7.61878 8.38029 9.24840 10.86801 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018778 B = 0.002411 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.723540 B =11608.672140 C =12634.256623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.431 3.569 4 O -0.503 6.503 5 C 0.102 3.898 6 H 0.117 0.883 7 N -0.655 5.655 8 C 0.058 3.942 9 C -0.093 4.093 10 C -0.112 4.112 11 S -0.131 6.131 12 C -0.516 4.516 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.071 4.071 21 C -0.139 4.139 22 C 0.059 3.941 23 O -0.386 6.386 24 C 0.064 3.936 25 C -0.161 4.161 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.354 0.646 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.267 0.733 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.766 -24.279 13.081 28.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.272 3.728 4 O -0.390 6.390 5 C -0.011 4.011 6 H 0.134 0.866 7 N -0.287 5.287 8 C -0.073 4.073 9 C -0.132 4.132 10 C -0.261 4.261 11 S 0.097 5.903 12 C -0.664 4.664 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.090 4.090 21 C -0.177 4.177 22 C -0.018 4.018 23 O -0.305 6.305 24 C -0.013 4.013 25 C -0.199 4.199 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.175 0.825 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.869 -23.403 13.981 27.693 hybrid contribution -1.910 0.037 -2.512 3.156 sum -6.779 -23.366 11.469 26.897 Atomic orbital electron populations 1.23291 0.76978 1.03616 1.02630 1.86626 1.23082 1.33501 1.83683 1.25428 0.93693 0.81638 0.72079 1.90710 1.66969 1.36354 1.44949 1.21689 0.84390 0.93098 1.01940 0.86567 1.60908 1.54908 1.00231 1.12614 1.22184 0.99993 0.96837 0.88246 1.21208 1.02675 0.92691 0.96632 1.23212 1.02763 1.02220 0.97938 1.84628 1.88469 1.03973 1.13229 1.22690 1.52913 0.99762 0.91049 0.91005 1.25016 0.94640 0.95288 0.98890 1.70028 1.42983 1.03589 1.33944 0.86166 0.78040 0.78244 0.83077 1.20306 1.20738 1.19698 1.21069 0.96913 0.94926 0.96068 1.22120 0.93586 1.02632 0.99315 1.22647 0.99705 0.82336 0.97073 1.87931 1.21310 1.26468 1.94782 1.22543 0.81183 1.00986 0.96606 1.22487 1.02504 0.94792 1.00087 0.91912 0.88126 0.91946 0.82475 0.94698 0.90746 0.91612 0.90589 0.92082 0.92358 0.92321 0.90638 0.90987 0.88835 0.93297 0.88703 0.93435 0.88937 0.89121 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.19 7.55 -39.25 -0.30 -3.48 16 3 C 0.43 4.71 7.02 36.00 0.25 4.96 16 4 O -0.50 -7.09 15.06 -18.75 -0.28 -7.37 16 5 C 0.10 0.97 2.11 -68.87 -0.15 0.83 16 6 H 0.12 1.04 7.80 -51.93 -0.41 0.64 16 7 N -0.65 -7.40 5.41 -107.95 -0.58 -7.98 16 8 C 0.06 0.77 5.38 -3.82 -0.02 0.75 16 9 C -0.09 -1.53 5.48 -26.73 -0.15 -1.68 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 S -0.13 -3.49 21.44 -107.50 -2.30 -5.79 16 12 C -0.52 -15.00 9.50 30.94 0.29 -14.71 16 13 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 16 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 C -0.07 -0.57 2.03 -90.44 -0.18 -0.75 16 21 C -0.14 -1.13 5.22 -26.58 -0.14 -1.26 16 22 C 0.06 0.46 6.84 37.21 0.25 0.72 16 23 O -0.39 -3.60 10.77 -35.23 -0.38 -3.98 16 24 C 0.06 0.46 6.84 37.21 0.25 0.71 16 25 C -0.16 -1.16 4.78 -26.59 -0.13 -1.28 16 26 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.35 4.28 7.75 -39.30 -0.30 3.97 16 30 H 0.03 0.51 7.62 -51.93 -0.40 0.11 16 31 H 0.07 0.93 8.06 -51.93 -0.42 0.52 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 35 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.82 7.72 -51.93 -0.40 0.42 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.64 5.57 -51.93 -0.29 0.35 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -33.05 375.85 -8.67 -41.73 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.68 Total: 0.62 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 1.48 Total: -10.61 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.15 Total: -33.52 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.96 Total: -14.84 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.30 Total: -5.79 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.05 -8.67 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880335002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.788 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds