Wall clock time and date at job start Tue Mar 31 2020 11:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34227 * 117.00313 * 2 1 4 4 O 1.20831 * 119.99897 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00244 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46613 * 60.00364 * 5 3 2 7 7 N 1.46905 * 109.47140 * 180.02562 * 5 3 2 8 8 C 1.46902 * 110.99800 * 275.00279 * 7 5 3 9 9 C 1.53006 * 109.46626 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 8 7 11 11 S 1.81009 * 109.46965 * 179.97438 * 10 9 8 12 12 C 1.76195 * 99.99997 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99978 * 0.02562 * 12 11 10 14 14 C 1.38799 * 119.99985 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99674 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00231 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47102 * 90.00382 * 16 14 12 18 18 H 1.48500 * 109.47585 * 210.00423 * 16 14 12 19 19 H 1.48506 * 109.47219 * 330.00545 * 16 14 12 20 20 C 1.52995 * 109.47547 * 300.00409 * 5 3 2 21 21 C 1.53178 * 109.54320 * 179.82010 * 20 5 3 22 22 C 1.53110 * 109.15585 * 183.24116 * 21 20 5 23 23 O 1.42906 * 109.48701 * 57.47418 * 22 21 20 24 24 C 1.42905 * 114.09786 * 298.88898 * 23 22 21 25 25 C 1.53092 * 109.41249 * 61.16055 * 24 23 22 26 26 H 1.09004 * 109.47305 * 59.99555 * 1 2 3 27 27 H 1.09004 * 109.47295 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46841 * 299.99821 * 1 2 3 29 29 H 1.00891 * 110.99988 * 38.95694 * 7 5 3 30 30 H 1.09000 * 109.47263 * 60.00269 * 8 7 5 31 31 H 1.09001 * 109.47582 * 299.99548 * 8 7 5 32 32 H 1.08993 * 109.46955 * 300.00347 * 9 8 7 33 33 H 1.09000 * 109.47050 * 60.00176 * 9 8 7 34 34 H 1.08993 * 109.47839 * 299.99931 * 10 9 8 35 35 H 1.09000 * 109.47160 * 60.00369 * 10 9 8 36 36 H 0.97009 * 119.99706 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.54429 * 299.99755 * 20 5 3 38 38 H 1.09001 * 109.52209 * 303.05381 * 21 20 5 39 39 H 1.08997 * 109.52671 * 63.25208 * 21 20 5 40 40 H 1.09001 * 109.40418 * 297.49587 * 22 21 20 41 41 H 1.08998 * 109.48690 * 177.50188 * 22 21 20 42 42 H 1.08993 * 109.47914 * 301.17655 * 24 23 22 43 43 H 1.08999 * 109.47937 * 181.13875 * 24 23 22 44 44 H 1.09006 * 109.52016 * 182.48559 * 25 24 23 45 45 H 1.08997 * 109.52877 * 62.29654 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9563 0.7805 -0.8892 7 7 3.9828 2.6835 0.0011 8 6 4.0179 3.2226 -1.3650 9 6 4.4544 4.6885 -1.3237 10 6 4.4916 5.2497 -2.7465 11 16 5.0072 6.9841 -2.6977 12 6 4.9635 7.3648 -4.4175 13 1 4.6752 6.6073 -5.1311 14 6 5.2988 8.6387 -4.8550 15 7 5.6498 9.5622 -3.9851 16 14 5.2519 9.0426 -6.6781 17 1 3.9015 9.5436 -7.0395 18 1 6.2642 10.0862 -6.9803 19 1 5.5526 7.8190 -7.4642 20 6 4.1129 0.5814 1.2501 21 6 5.6429 0.6567 1.2500 22 6 6.1837 -0.1090 2.4605 23 8 5.7217 -1.4605 2.4149 24 6 4.2996 -1.5930 2.4612 25 6 3.6833 -0.8889 1.2495 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.3828 3.2378 0.5932 30 1 3.0250 3.1519 -1.8091 31 1 4.7255 2.6492 -1.9639 32 1 3.7466 5.2616 -0.7249 33 1 5.4472 4.7596 -0.8794 34 1 5.1996 4.6766 -3.3449 35 1 3.4989 5.1786 -3.1912 36 1 5.8845 10.4524 -4.2909 37 1 3.7237 1.0748 2.1406 38 1 6.0295 0.2086 0.3347 39 1 5.9563 1.6991 1.3070 40 1 5.8304 0.3652 3.3762 41 1 7.2734 -0.0965 2.4415 42 1 3.9218 -1.1382 3.3769 43 1 4.0321 -2.6495 2.4426 44 1 2.5964 -0.9508 1.3062 45 1 4.0291 -1.3692 0.3342 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880335002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:13 Heat of formation + Delta-G solvation = -173.729712 kcal Electronic energy + Delta-G solvation = -24583.929740 eV Core-core repulsion = 20919.087391 eV Total energy + Delta-G solvation = -3664.842349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99346 -40.11593 -38.37281 -37.23237 -35.58267 -34.61495 -33.00658 -31.92954 -29.69817 -28.16443 -27.70899 -25.64071 -24.72810 -24.08339 -22.62208 -21.73146 -20.97795 -19.56681 -18.97620 -18.18395 -17.73709 -16.90746 -16.85083 -16.77762 -16.54326 -16.35565 -16.00060 -15.74566 -15.36296 -14.90295 -14.75746 -14.49573 -14.32841 -14.02129 -13.72622 -13.53598 -13.21734 -13.14781 -13.11314 -12.94383 -12.93912 -12.54843 -12.37083 -12.16935 -12.07594 -11.91586 -11.88615 -11.66856 -11.49723 -11.29515 -11.15527 -11.08727 -10.40804 -10.33241 -9.76544 -8.67842 -8.38441 -6.14784 0.99545 1.30207 1.38452 1.47672 1.64217 1.73538 2.27043 2.83887 2.95683 3.07839 3.31579 3.50419 3.75132 3.84046 3.98262 3.99704 4.13602 4.19913 4.24238 4.26932 4.27926 4.31612 4.41201 4.43794 4.52682 4.66653 4.67718 4.73878 4.75180 4.78471 4.91220 4.93381 5.03912 5.15016 5.21827 5.24820 5.31480 5.38273 5.38420 5.43975 5.70707 6.09678 6.16964 6.36963 6.58160 7.03614 8.71060 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018778 B = 0.002411 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.723540 B =11608.672140 C =12634.256623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.348 6.348 3 C 0.434 3.566 4 O -0.539 6.539 5 C 0.104 3.896 6 H 0.128 0.872 7 N -0.651 5.651 8 C 0.071 3.929 9 C -0.082 4.082 10 C -0.088 4.088 11 S -0.196 6.196 12 C -0.539 4.539 13 H 0.072 0.928 14 C 0.014 3.986 15 N -0.907 5.907 16 Si 0.995 3.005 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.262 1.262 20 C -0.065 4.065 21 C -0.134 4.134 22 C 0.058 3.942 23 O -0.405 6.405 24 C 0.060 3.940 25 C -0.154 4.154 26 H 0.053 0.947 27 H 0.134 0.866 28 H 0.060 0.940 29 H 0.350 0.650 30 H 0.024 0.976 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.272 0.728 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.101 0.899 42 H 0.054 0.946 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 -26.187 12.571 29.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.263 6.263 3 C 0.277 3.723 4 O -0.429 6.429 5 C -0.008 4.008 6 H 0.145 0.855 7 N -0.282 5.282 8 C -0.059 4.059 9 C -0.121 4.121 10 C -0.237 4.237 11 S 0.032 5.968 12 C -0.687 4.687 13 H 0.090 0.910 14 C -0.191 4.191 15 N -0.544 5.544 16 Si 0.817 3.183 17 H -0.194 1.194 18 H -0.198 1.198 19 H -0.187 1.187 20 C -0.084 4.084 21 C -0.172 4.172 22 C -0.019 4.019 23 O -0.324 6.324 24 C -0.016 4.016 25 C -0.191 4.191 26 H 0.072 0.928 27 H 0.152 0.848 28 H 0.079 0.921 29 H 0.171 0.829 30 H 0.043 0.957 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.138 -25.344 13.486 29.165 hybrid contribution -1.882 0.526 -2.274 2.998 sum -7.020 -24.819 11.212 28.124 Atomic orbital electron populations 1.23541 0.75693 1.05691 1.02124 1.86619 1.24288 1.32304 1.83041 1.25602 0.94082 0.81587 0.71051 1.90702 1.67789 1.37580 1.46837 1.21779 0.83811 0.91991 1.03246 0.85489 1.60875 1.55032 1.01146 1.11127 1.21954 0.99587 0.94763 0.89628 1.21081 1.02659 0.94575 0.93739 1.23138 1.02253 0.97639 1.00685 1.84636 1.89137 1.09731 1.13248 1.23037 1.53388 1.00410 0.91817 0.90981 1.26087 0.93778 0.94931 1.04273 1.70160 1.43659 1.04123 1.36436 0.85005 0.78489 0.78371 0.76478 1.19382 1.19767 1.18654 1.21037 0.96826 0.95426 0.95107 1.22056 0.93470 1.02196 0.99433 1.22703 1.00176 0.81896 0.97082 1.87910 1.22498 1.27115 1.94861 1.22681 0.80250 1.01941 0.96747 1.22426 1.02638 0.93869 1.00211 0.92834 0.84770 0.92107 0.82919 0.95730 0.89327 0.92417 0.90525 0.91425 0.92634 0.91934 0.90770 0.91251 0.89534 0.92723 0.88072 0.92801 0.87595 0.88764 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.66 7.55 -51.39 -0.39 -6.05 16 3 C 0.43 9.00 7.02 71.23 0.50 9.50 16 4 O -0.54 -15.01 15.06 21.95 0.33 -14.68 16 5 C 0.10 1.84 2.11 44.17 0.09 1.93 16 6 H 0.13 2.01 7.80 -2.38 -0.02 1.99 16 7 N -0.65 -14.03 5.41 -495.43 -2.68 -16.71 16 8 C 0.07 1.82 5.38 86.31 0.46 2.29 16 9 C -0.08 -2.66 5.48 30.60 0.17 -2.49 16 10 C -0.09 -3.59 5.67 71.98 0.41 -3.18 16 11 S -0.20 -10.65 21.44 -56.49 -1.21 -11.86 16 12 C -0.54 -31.65 9.50 67.95 0.65 -31.01 16 13 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 14 C 0.01 0.82 5.49 84.86 0.47 1.29 16 15 N -0.91 -55.48 13.22 21.65 0.29 -55.20 16 16 Si 0.99 44.45 29.55 68.60 2.03 46.48 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 20 C -0.06 -0.94 2.03 -10.67 -0.02 -0.96 16 21 C -0.13 -1.98 5.22 30.69 0.16 -1.82 16 22 C 0.06 0.82 6.84 72.02 0.49 1.31 16 23 O -0.40 -6.86 10.77 -148.98 -1.60 -8.46 16 24 C 0.06 0.74 6.84 72.01 0.49 1.23 16 25 C -0.15 -1.89 4.78 30.69 0.15 -1.74 16 26 H 0.05 0.78 8.13 -2.38 -0.02 0.76 16 27 H 0.13 0.74 8.14 -2.38 -0.02 0.73 16 28 H 0.06 0.79 8.13 -2.38 -0.02 0.77 16 29 H 0.35 8.28 7.75 -89.70 -0.69 7.58 16 30 H 0.02 0.69 7.62 -2.39 -0.02 0.67 16 31 H 0.09 2.04 8.06 -2.39 -0.02 2.02 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 2.67 8.14 -2.40 -0.02 2.65 16 35 H 0.05 2.29 8.14 -2.40 -0.02 2.27 16 36 H 0.27 15.38 8.31 -92.70 -0.77 14.60 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.42 7.72 -2.39 -0.02 1.40 16 40 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 1.11 5.57 -2.38 -0.01 1.09 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -71.58 375.85 2.24 -69.34 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.27 Total: 19.31 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 5.21 Total: -22.17 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -2.40 Total: -71.91 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -1.66 Total: -29.19 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -10.65 SS G_CDS: -1.21 Total: -11.86 kcal Total: -71.58 2.24 -69.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880335002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.393 kcal (2) G-P(sol) polarization free energy of solvation -71.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds