Wall clock time and date at job start Tue Mar 31 2020 11:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.46298 * 113.99915 * 2 1 4 4 C 1.46902 * 110.99661 * 116.04569 * 3 2 1 5 5 C 1.46896 * 111.00056 * 240.00006 * 3 2 1 6 6 C 1.53005 * 109.46967 * 175.00421 * 5 3 2 7 7 N 1.46500 * 109.46967 * 180.02562 * 6 5 3 8 8 C 1.34777 * 119.99616 * 179.97438 * 7 6 5 9 9 O 1.21660 * 120.00173 * 4.70131 * 8 7 6 10 10 C 1.46896 * 119.99628 * 184.70686 * 8 7 6 11 11 C 1.36125 * 125.43574 * 173.63035 * 10 8 7 12 12 C 1.41702 * 107.74678 * 180.23797 * 11 10 8 13 13 C 1.40013 * 133.34656 * 179.81792 * 12 11 10 14 14 C 1.36581 * 119.82907 * 179.97438 * 13 12 11 15 15 C 1.38855 * 120.60037 * 0.02562 * 14 13 12 16 16 C 1.37847 * 120.63211 * 359.97438 * 15 14 13 17 17 C 1.39086 * 119.81378 * 0.02562 * 16 15 14 18 18 N 1.37839 * 133.16192 * 180.02562 * 17 16 15 19 19 C 1.36887 * 125.61879 * 359.93788 * 18 17 16 20 20 H 1.08004 * 119.99791 * 137.97817 * 19 18 17 21 21 C 1.39009 * 120.00332 * 317.97444 * 19 18 17 22 22 N 1.31354 * 119.99800 * 341.87208 * 21 19 18 23 23 Si 1.86804 * 119.99839 * 161.59880 * 21 19 18 24 24 H 1.48501 * 109.46959 * 180.27595 * 23 21 19 25 25 H 1.48496 * 109.47051 * 300.27316 * 23 21 19 26 26 H 1.48493 * 109.47235 * 60.27583 * 23 21 19 27 27 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47011 * 299.99507 * 1 2 3 29 29 H 1.08997 * 109.47344 * 60.00049 * 1 2 3 30 30 H 1.08997 * 109.47275 * 183.95448 * 4 3 2 31 31 H 1.09005 * 109.47583 * 303.95697 * 4 3 2 32 32 H 1.09001 * 109.46968 * 63.95664 * 4 3 2 33 33 H 1.08991 * 109.47120 * 55.00193 * 5 3 2 34 34 H 1.09003 * 109.47340 * 295.00141 * 5 3 2 35 35 H 1.08999 * 109.47256 * 60.00163 * 6 5 3 36 36 H 1.08997 * 109.46672 * 299.99651 * 6 5 3 37 37 H 0.97001 * 120.00162 * 0.02562 * 7 6 5 38 38 H 1.07993 * 126.12192 * 0.02562 * 11 10 8 39 39 H 1.08002 * 120.09096 * 359.94374 * 13 12 11 40 40 H 1.08004 * 119.70199 * 180.02562 * 14 13 12 41 41 H 1.07996 * 119.68642 * 180.02562 * 15 14 13 42 42 H 1.07997 * 120.09192 * 180.02562 * 16 15 14 43 43 H 0.97000 * 119.99793 * 353.60588 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.7883 1.5724 1.2322 5 6 2.8646 1.5386 -1.1877 6 6 3.3674 2.9833 -1.2168 7 7 4.2052 3.1850 -2.4015 8 6 4.7610 4.3901 -2.6366 9 8 4.6382 5.2859 -1.8225 10 6 5.5149 4.6220 -3.8758 11 6 6.0150 5.8209 -4.2827 12 6 6.6662 5.6181 -5.5248 13 6 7.3481 6.4694 -6.4027 14 6 7.8836 5.9692 -7.5553 15 6 7.7579 4.6218 -7.8665 16 6 7.0911 3.7642 -7.0180 17 6 6.5373 4.2503 -5.8384 18 7 5.8311 3.6575 -4.8138 19 6 5.4943 2.3328 -4.7400 20 1 5.5822 1.8047 -3.8019 21 6 5.0391 1.6671 -5.8722 22 7 4.5941 2.3510 -6.9016 23 14 5.0675 -0.1997 -5.9328 24 1 4.5396 -0.6606 -7.2420 25 1 6.4629 -0.6793 -5.7653 26 1 4.2226 -0.7434 -4.8393 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.1610 2.5967 1.2381 31 1 2.1422 1.4160 2.0961 32 1 3.6286 0.8797 1.2768 33 1 2.2792 1.3394 -2.0852 34 1 3.7155 0.8584 -1.1506 35 1 3.9529 3.1824 -0.3192 36 1 2.5165 3.6634 -1.2539 37 1 4.3592 2.4514 -3.0172 38 1 5.9278 6.7592 -3.7552 39 1 7.4501 7.5190 -6.1694 40 1 8.4095 6.6276 -8.2308 41 1 8.1874 4.2420 -8.7817 42 1 6.9988 2.7177 -7.2685 43 1 4.4958 3.3139 -6.8383 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880642499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:16 Heat of formation + Delta-G solvation = 29.603927 kcal Electronic energy + Delta-G solvation = -26512.553067 eV Core-core repulsion = 22753.376726 eV Total energy + Delta-G solvation = -3759.176341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.74475 -38.79671 -37.57680 -36.14071 -35.29058 -33.93355 -33.19202 -30.68012 -29.55233 -28.75625 -27.86145 -26.76907 -25.08148 -24.81775 -22.85869 -21.27335 -21.10828 -20.26303 -19.47358 -18.51331 -17.22444 -16.60559 -15.92023 -15.76398 -15.48694 -15.36594 -15.08093 -14.76483 -14.46644 -14.12605 -13.94351 -13.66895 -13.57608 -13.22806 -13.16437 -12.99388 -12.49646 -12.46623 -12.19563 -11.99797 -11.80937 -11.64854 -11.27310 -11.14294 -10.93763 -10.62833 -10.50149 -10.40993 -10.16956 -9.95842 -9.55768 -9.26599 -8.91957 -8.88552 -8.64101 -7.61706 -7.11028 -6.82468 -4.78651 1.65281 2.33269 2.55976 2.93894 3.01097 3.04265 3.21196 3.73037 3.80363 4.12983 4.29273 4.58887 4.63073 4.83344 5.00158 5.01645 5.28469 5.33059 5.35786 5.44900 5.50377 5.53965 5.60373 5.66768 5.71147 5.79013 5.90290 5.96445 6.04743 6.24631 6.35522 6.47114 6.49335 6.70649 6.81663 6.82620 6.88672 6.92838 7.13228 7.33072 7.42286 7.49398 7.71313 7.74662 8.04812 8.14751 8.56380 8.81635 9.01801 9.99813 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.004095 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.790415 B = 6835.417928 C = 8446.450910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.264 6.264 3 N -0.363 5.363 4 C 0.003 3.997 5 C 0.029 3.971 6 C 0.126 3.874 7 N -0.728 5.728 8 C 0.598 3.402 9 O -0.556 6.556 10 C -0.022 4.022 11 C -0.163 4.163 12 C -0.129 4.129 13 C -0.081 4.081 14 C -0.160 4.160 15 C -0.134 4.134 16 C -0.081 4.081 17 C 0.070 3.930 18 N -0.265 5.265 19 C -0.451 4.451 20 H 0.102 0.898 21 C 0.030 3.970 22 N -0.818 5.818 23 Si 1.073 2.927 24 H -0.270 1.270 25 H -0.274 1.274 26 H -0.275 1.275 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.417 0.583 38 H 0.135 0.865 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 -3.614 6.871 8.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.269 6.269 3 N -0.132 5.132 4 C -0.145 4.145 5 C -0.099 4.099 6 C 0.001 3.999 7 N -0.390 5.390 8 C 0.388 3.612 9 O -0.435 6.435 10 C -0.136 4.136 11 C -0.191 4.191 12 C -0.134 4.134 13 C -0.099 4.099 14 C -0.179 4.179 15 C -0.155 4.155 16 C -0.101 4.101 17 C -0.045 4.045 18 N 0.070 4.930 19 C -0.578 4.578 20 H 0.119 0.881 21 C -0.187 4.187 22 N -0.444 5.444 23 Si 0.895 3.105 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.264 0.736 38 H 0.153 0.847 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.137 0.863 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.834 -4.543 6.489 8.800 hybrid contribution 0.787 0.513 0.724 1.186 sum -3.047 -4.030 7.212 8.805 Atomic orbital electron populations 1.22617 0.80654 1.01605 1.00698 1.90694 1.20877 1.18396 1.96913 1.67489 1.34159 1.08398 1.03104 1.22835 0.97432 1.02201 0.92074 1.22537 0.96783 0.96615 0.93967 1.21118 0.95014 0.94398 0.89386 1.46623 1.50896 1.14658 1.26802 1.17183 0.77884 0.81785 0.84381 1.90722 1.62194 1.44077 1.46503 1.20152 1.08615 0.89861 0.94992 1.20415 1.05839 0.96206 0.96610 1.18009 1.05301 0.93347 0.96727 1.20127 0.97993 0.97854 0.93972 1.20341 1.04159 0.95409 0.97966 1.20617 1.02149 0.93516 0.99191 1.20204 0.97938 0.99793 0.92126 1.18430 0.99846 0.92384 0.93797 1.40127 1.33314 1.05928 1.13620 1.20436 1.51759 0.84027 1.01551 0.88114 1.26839 0.92050 1.08648 0.91195 1.70600 1.30646 1.12096 1.31012 0.83442 0.77944 0.71269 0.77810 1.19386 1.19976 1.20010 0.89458 0.93823 0.93500 0.88789 0.90558 0.94061 0.88933 0.92787 0.91481 0.90800 0.73629 0.84748 0.87411 0.87523 0.87201 0.86343 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 11.51 101.05 1.16 1.58 16 2 O -0.26 -3.55 10.96 -13.92 -0.15 -3.70 16 3 N -0.36 -4.75 5.14 -121.13 -0.62 -5.37 16 4 C 0.00 0.03 9.77 60.07 0.59 0.62 16 5 C 0.03 0.42 5.63 -3.82 -0.02 0.39 16 6 C 0.13 1.96 5.47 -4.04 -0.02 1.94 16 7 N -0.73 -13.93 5.49 -61.55 -0.34 -14.27 16 8 C 0.60 13.32 7.76 -12.76 -0.10 13.22 16 9 O -0.56 -13.06 16.85 5.22 0.09 -12.98 16 10 C -0.02 -0.51 6.77 -82.24 -0.56 -1.07 16 11 C -0.16 -3.73 10.55 -39.02 -0.41 -4.14 16 12 C -0.13 -2.94 6.16 -106.90 -0.66 -3.60 16 13 C -0.08 -1.59 10.06 -39.52 -0.40 -1.98 16 14 C -0.16 -2.94 9.97 -39.95 -0.40 -3.34 16 15 C -0.13 -2.63 10.02 -39.50 -0.40 -3.02 16 16 C -0.08 -1.82 8.56 -39.41 -0.34 -2.16 16 17 C 0.07 1.68 5.42 -83.83 -0.45 1.23 16 18 N -0.27 -6.46 2.57 -56.08 -0.14 -6.60 16 19 C -0.45 -10.53 7.79 -15.01 -0.12 -10.65 16 20 H 0.10 2.22 6.27 -52.48 -0.33 1.89 16 21 C 0.03 0.68 4.40 -17.47 -0.08 0.61 16 22 N -0.82 -20.53 12.00 55.50 0.67 -19.86 16 23 Si 1.07 19.98 29.96 -169.99 -5.09 14.88 16 24 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 26 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.96 6.33 -51.93 -0.33 0.63 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.00 6.42 -51.93 -0.33 0.67 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.42 8.13 4.25 -40.82 -0.17 7.96 16 38 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 39 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.12 2.76 6.77 -52.49 -0.36 2.40 16 43 H 0.29 7.80 6.92 -40.82 -0.28 7.52 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -28.35 358.47 -8.06 -36.41 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -5.67 Total: 16.45 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -2.20 Total: -10.37 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.44 Total: -46.10 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.06 Total: -16.68 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.09 Total: 14.88 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.35 -8.06 -36.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880642499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.017 kcal (2) G-P(sol) polarization free energy of solvation -28.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds