Wall clock time and date at job start Tue Mar 31 2020 11:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.46298 * 113.99915 * 2 1 4 4 C 1.46902 * 110.99661 * 116.04569 * 3 2 1 5 5 C 1.46896 * 111.00056 * 240.00006 * 3 2 1 6 6 C 1.53005 * 109.46967 * 175.00421 * 5 3 2 7 7 N 1.46500 * 109.46967 * 180.02562 * 6 5 3 8 8 C 1.34777 * 119.99616 * 179.97438 * 7 6 5 9 9 O 1.21660 * 120.00173 * 4.70131 * 8 7 6 10 10 C 1.46896 * 119.99628 * 184.70686 * 8 7 6 11 11 C 1.36125 * 125.43574 * 173.63035 * 10 8 7 12 12 C 1.41702 * 107.74678 * 180.23797 * 11 10 8 13 13 C 1.40013 * 133.34656 * 179.81792 * 12 11 10 14 14 C 1.36581 * 119.82907 * 179.97438 * 13 12 11 15 15 C 1.38855 * 120.60037 * 0.02562 * 14 13 12 16 16 C 1.37847 * 120.63211 * 359.97438 * 15 14 13 17 17 C 1.39086 * 119.81378 * 0.02562 * 16 15 14 18 18 N 1.37839 * 133.16192 * 180.02562 * 17 16 15 19 19 C 1.36887 * 125.61879 * 359.93788 * 18 17 16 20 20 H 1.08004 * 119.99791 * 137.97817 * 19 18 17 21 21 C 1.39009 * 120.00332 * 317.97444 * 19 18 17 22 22 N 1.31354 * 119.99800 * 341.87208 * 21 19 18 23 23 Si 1.86804 * 119.99839 * 161.59880 * 21 19 18 24 24 H 1.48501 * 109.46959 * 180.27595 * 23 21 19 25 25 H 1.48496 * 109.47051 * 300.27316 * 23 21 19 26 26 H 1.48493 * 109.47235 * 60.27583 * 23 21 19 27 27 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47011 * 299.99507 * 1 2 3 29 29 H 1.08997 * 109.47344 * 60.00049 * 1 2 3 30 30 H 1.08997 * 109.47275 * 183.95448 * 4 3 2 31 31 H 1.09005 * 109.47583 * 303.95697 * 4 3 2 32 32 H 1.09001 * 109.46968 * 63.95664 * 4 3 2 33 33 H 1.08991 * 109.47120 * 55.00193 * 5 3 2 34 34 H 1.09003 * 109.47340 * 295.00141 * 5 3 2 35 35 H 1.08999 * 109.47256 * 60.00163 * 6 5 3 36 36 H 1.08997 * 109.46672 * 299.99651 * 6 5 3 37 37 H 0.97001 * 120.00162 * 0.02562 * 7 6 5 38 38 H 1.07993 * 126.12192 * 0.02562 * 11 10 8 39 39 H 1.08002 * 120.09096 * 359.94374 * 13 12 11 40 40 H 1.08004 * 119.70199 * 180.02562 * 14 13 12 41 41 H 1.07996 * 119.68642 * 180.02562 * 15 14 13 42 42 H 1.07997 * 120.09192 * 180.02562 * 16 15 14 43 43 H 0.97000 * 119.99793 * 353.60588 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.7883 1.5724 1.2322 5 6 2.8646 1.5386 -1.1877 6 6 3.3674 2.9833 -1.2168 7 7 4.2052 3.1850 -2.4015 8 6 4.7610 4.3901 -2.6366 9 8 4.6382 5.2859 -1.8225 10 6 5.5149 4.6220 -3.8758 11 6 6.0150 5.8209 -4.2827 12 6 6.6662 5.6181 -5.5248 13 6 7.3481 6.4694 -6.4027 14 6 7.8836 5.9692 -7.5553 15 6 7.7579 4.6218 -7.8665 16 6 7.0911 3.7642 -7.0180 17 6 6.5373 4.2503 -5.8384 18 7 5.8311 3.6575 -4.8138 19 6 5.4943 2.3328 -4.7400 20 1 5.5822 1.8047 -3.8019 21 6 5.0391 1.6671 -5.8722 22 7 4.5941 2.3510 -6.9016 23 14 5.0675 -0.1997 -5.9328 24 1 4.5396 -0.6606 -7.2420 25 1 6.4629 -0.6793 -5.7653 26 1 4.2226 -0.7434 -4.8393 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.1610 2.5967 1.2381 31 1 2.1422 1.4160 2.0961 32 1 3.6286 0.8797 1.2768 33 1 2.2792 1.3394 -2.0852 34 1 3.7155 0.8584 -1.1506 35 1 3.9529 3.1824 -0.3192 36 1 2.5165 3.6634 -1.2539 37 1 4.3592 2.4514 -3.0172 38 1 5.9278 6.7592 -3.7552 39 1 7.4501 7.5190 -6.1694 40 1 8.4095 6.6276 -8.2308 41 1 8.1874 4.2420 -8.7817 42 1 6.9988 2.7177 -7.2685 43 1 4.4958 3.3139 -6.8383 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880642499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:15 Heat of formation + Delta-G solvation = 12.808997 kcal Electronic energy + Delta-G solvation = -26513.281350 eV Core-core repulsion = 22753.376726 eV Total energy + Delta-G solvation = -3759.904624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.44952 -40.41854 -38.66006 -37.77719 -36.59872 -35.60574 -34.50349 -32.38567 -31.05928 -30.28857 -29.31828 -27.64185 -26.67692 -26.15673 -24.34660 -22.79304 -22.49119 -21.90244 -21.16204 -20.18584 -18.42713 -18.09326 -17.49229 -17.12517 -16.87646 -16.65966 -16.48065 -16.14262 -15.91512 -15.61913 -15.50712 -15.05444 -14.86771 -14.72113 -14.55994 -14.24128 -14.03121 -13.88174 -13.53870 -13.30800 -13.13504 -12.76940 -12.68397 -12.47828 -12.26447 -12.15754 -12.12611 -11.97828 -11.57906 -11.33339 -11.04980 -10.97143 -10.59479 -10.20897 -9.92148 -9.39939 -8.84542 -8.53781 -6.61320 -0.03039 0.94506 1.23851 1.31273 1.49039 1.53885 1.74836 2.16274 2.30424 2.39194 2.61270 2.88759 3.18203 3.52173 3.80326 3.92545 3.95413 4.08919 4.25219 4.32142 4.41681 4.42902 4.51162 4.60422 4.61287 4.65985 4.68409 4.71677 4.73953 4.84970 4.85196 4.91126 5.06771 5.14637 5.25628 5.29149 5.38942 5.51688 5.65723 5.73621 5.82402 5.89993 6.01985 6.05039 6.40370 6.44688 6.82079 7.11678 7.25733 8.13504 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.004095 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.790415 B = 6835.417928 C = 8446.450910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.282 6.282 3 N -0.368 5.368 4 C 0.001 3.999 5 C 0.039 3.961 6 C 0.129 3.871 7 N -0.721 5.721 8 C 0.594 3.406 9 O -0.575 6.575 10 C -0.048 4.048 11 C -0.171 4.171 12 C -0.149 4.149 13 C -0.083 4.083 14 C -0.152 4.152 15 C -0.121 4.121 16 C -0.112 4.112 17 C 0.045 3.955 18 N -0.282 5.282 19 C -0.461 4.461 20 H 0.109 0.891 21 C 0.000 4.000 22 N -0.841 5.841 23 Si 1.116 2.884 24 H -0.276 1.276 25 H -0.265 1.265 26 H -0.252 1.252 27 H 0.110 0.890 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.416 0.584 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.101 0.899 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 -3.860 6.841 8.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.287 6.287 3 N -0.137 5.137 4 C -0.147 4.147 5 C -0.090 4.090 6 C 0.005 3.995 7 N -0.380 5.380 8 C 0.383 3.617 9 O -0.457 6.457 10 C -0.162 4.162 11 C -0.199 4.199 12 C -0.154 4.154 13 C -0.102 4.102 14 C -0.170 4.170 15 C -0.141 4.141 16 C -0.133 4.133 17 C -0.069 4.069 18 N 0.053 4.947 19 C -0.587 4.587 20 H 0.126 0.874 21 C -0.211 4.211 22 N -0.467 5.467 23 Si 0.933 3.067 24 H -0.201 1.201 25 H -0.190 1.190 26 H -0.176 1.176 27 H 0.128 0.872 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.262 0.738 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.169 0.831 41 H 0.159 0.841 42 H 0.120 0.880 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.348 -4.796 6.487 8.735 hybrid contribution 0.669 0.678 0.709 1.188 sum -2.679 -4.118 7.197 8.713 Atomic orbital electron populations 1.22827 0.79053 1.03204 1.00938 1.90671 1.22661 1.18337 1.96998 1.67503 1.34193 1.08732 1.03284 1.22928 0.97644 1.02464 0.91674 1.22348 0.96801 0.95272 0.94554 1.21226 0.94488 0.95571 0.88227 1.46580 1.50363 1.13489 1.27565 1.17147 0.78089 0.82446 0.83993 1.90690 1.63227 1.44759 1.46984 1.20536 1.09500 0.90455 0.95756 1.20675 1.05721 0.96500 0.97009 1.18397 1.06179 0.93508 0.97325 1.20562 0.96876 0.99087 0.93672 1.20827 1.03002 0.95344 0.97873 1.21084 0.99913 0.93872 0.99231 1.20268 1.00272 0.99747 0.92968 1.18878 1.00379 0.93322 0.94280 1.40286 1.34106 1.06252 1.14056 1.20719 1.51738 0.84135 1.02157 0.87428 1.28141 0.90614 1.11791 0.90517 1.70715 1.33265 1.10680 1.32083 0.82939 0.78752 0.66873 0.78140 1.20065 1.18958 1.17554 0.87181 0.92860 0.93953 0.88269 0.88976 0.94042 0.89662 0.92808 0.90470 0.91052 0.73823 0.83612 0.84312 0.83071 0.84071 0.88038 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 11.51 113.37 1.30 1.98 16 2 O -0.28 -7.18 10.96 -50.15 -0.55 -7.73 16 3 N -0.37 -9.24 5.14 -537.14 -2.76 -12.00 16 4 C 0.00 0.02 9.77 127.69 1.25 1.26 16 5 C 0.04 1.08 5.63 86.31 0.49 1.56 16 6 C 0.13 4.00 5.47 86.38 0.47 4.47 16 7 N -0.72 -28.00 5.49 -466.88 -2.56 -30.56 16 8 C 0.59 27.07 7.76 86.51 0.67 27.75 16 9 O -0.58 -27.47 16.85 -4.22 -0.07 -27.54 16 10 C -0.05 -2.36 6.77 39.91 0.27 -2.09 16 11 C -0.17 -7.97 10.55 22.63 0.24 -7.73 16 12 C -0.15 -6.81 6.16 -21.34 -0.13 -6.95 16 13 C -0.08 -3.10 10.06 22.31 0.22 -2.88 16 14 C -0.15 -5.08 9.97 22.03 0.22 -4.86 16 15 C -0.12 -4.49 10.02 22.32 0.22 -4.26 16 16 C -0.11 -5.12 8.56 22.38 0.19 -4.93 16 17 C 0.05 2.23 5.42 39.06 0.21 2.44 16 18 N -0.28 -14.13 2.57 -331.33 -0.85 -14.99 16 19 C -0.46 -22.08 7.79 84.09 0.66 -21.43 16 20 H 0.11 4.83 6.27 -2.91 -0.02 4.81 16 21 C 0.00 0.02 4.40 84.95 0.37 0.39 16 22 N -0.84 -43.52 12.00 21.67 0.26 -43.26 16 23 Si 1.12 40.14 29.96 68.60 2.06 42.19 16 24 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16 25 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 26 H -0.25 -8.06 7.11 99.48 0.71 -7.35 16 27 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 1.89 6.33 -2.39 -0.02 1.88 16 31 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.45 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 2.26 6.42 -2.39 -0.02 2.25 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.42 16.52 4.25 -92.71 -0.39 16.12 16 38 H 0.15 6.21 8.06 -2.91 -0.02 6.19 16 39 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 41 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 42 H 0.10 4.87 6.77 -2.91 -0.02 4.85 16 43 H 0.27 15.11 6.92 -92.71 -0.64 14.47 16 Total: -1.00 -62.84 358.47 2.95 -59.89 By element: Atomic # 1 Polarization: 48.49 SS G_CDS: 0.77 Total: 49.26 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 6.66 Total: -15.27 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -5.92 Total: -100.81 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.62 Total: -35.27 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.06 Total: 42.19 kcal Total: -62.84 2.95 -59.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880642499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.703 kcal (2) G-P(sol) polarization free energy of solvation -62.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds