Wall clock time and date at job start Tue Mar 31 2020 11:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46604 * 114.87287 * 3 2 1 5 5 H 1.09000 * 109.47685 * 305.00170 * 4 3 2 6 6 C 1.53002 * 109.46911 * 185.00017 * 4 3 2 7 7 C 1.52997 * 109.47429 * 175.00245 * 6 4 3 8 8 O 1.42891 * 109.47579 * 179.97438 * 7 6 4 9 9 C 1.42900 * 114.00279 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.47124 * 65.00308 * 4 3 2 11 11 C 1.34778 * 119.99972 * 274.99972 * 10 4 3 12 12 O 1.21578 * 119.99862 * 359.97438 * 11 10 4 13 13 N 1.34777 * 120.00023 * 180.02562 * 11 10 4 14 14 C 1.39243 * 119.99975 * 174.85758 * 13 11 10 15 15 C 1.39682 * 119.57546 * 185.11127 * 14 13 11 16 16 C 1.38646 * 119.49415 * 179.97438 * 15 14 13 17 17 C 1.38349 * 118.67217 * 0.02562 * 16 15 14 18 18 C 1.40569 * 119.13334 * 359.97438 * 17 16 15 19 19 C 1.41334 * 119.79166 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99343 * 0.02562 * 19 18 17 21 21 C 1.40025 * 120.00158 * 180.02562 * 19 18 17 22 22 N 1.30740 * 119.99910 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99905 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47306 * 59.99531 * 23 21 19 25 25 H 1.48503 * 109.47004 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46775 * 299.99406 * 23 21 19 27 27 N 1.31903 * 119.57369 * 4.83497 * 14 13 11 28 28 H 4.44645 * 5.63362 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.46772 * 354.87720 * 3 2 1 30 30 H 1.08994 * 109.47159 * 234.87248 * 3 2 1 31 31 H 1.08999 * 109.47233 * 54.99783 * 6 4 3 32 32 H 1.09002 * 109.46846 * 295.00392 * 6 4 3 33 33 H 1.09007 * 109.47142 * 59.99847 * 7 6 4 34 34 H 1.08997 * 109.47128 * 300.00648 * 7 6 4 35 35 H 1.08994 * 109.46876 * 300.00040 * 9 8 7 36 36 H 1.08998 * 109.46877 * 60.00030 * 9 8 7 37 37 H 1.08999 * 109.47007 * 180.02562 * 9 8 7 38 38 H 0.96997 * 119.99931 * 94.99410 * 10 4 3 39 39 H 0.97000 * 119.99869 * 354.85633 * 13 11 10 40 40 H 1.07996 * 120.25355 * 359.95681 * 15 14 13 41 41 H 1.08007 * 120.66376 * 180.02562 * 16 15 14 42 42 H 1.08002 * 120.43498 * 179.97438 * 17 16 15 43 43 H 0.97001 * 119.99582 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.6076 -1.3088 5 1 2.7212 0.0705 -2.1519 6 6 4.6805 0.4951 -1.3634 7 6 5.1799 0.9875 -2.7231 8 8 6.6041 0.8829 -2.7739 9 6 7.1754 1.3204 -4.0086 10 7 2.7674 2.0187 -1.3764 11 6 1.5499 2.3611 -1.8422 12 8 0.7740 1.4989 -2.2066 13 7 1.1929 3.6592 -1.9049 14 6 -0.0205 4.0203 -2.4845 15 6 -0.3340 5.3724 -2.6420 16 6 -1.5425 5.7301 -3.2198 17 6 -2.4068 4.7286 -3.6248 18 6 -2.0338 3.3861 -3.4390 19 6 -2.9059 2.3519 -3.8481 20 1 -3.8553 2.5944 -4.3023 21 6 -2.5390 1.0131 -3.6646 22 7 -1.3894 0.7198 -3.1153 23 14 -3.6914 -0.3538 -4.2060 24 1 -3.9358 -0.2457 -5.6668 25 1 -3.0742 -1.6702 -3.9039 26 1 -4.9801 -0.2320 -3.4781 27 7 -0.8568 3.0813 -2.8827 28 1 -1.0501 0.0001 0.0003 29 1 3.0097 -1.0228 0.0918 30 1 3.0090 0.5921 0.8404 31 1 4.9732 -0.5456 -1.2239 32 1 5.1183 1.1047 -0.5729 33 1 4.8872 2.0282 -2.8626 34 1 4.7420 0.3780 -3.5135 35 1 6.7793 0.7178 -4.8258 36 1 6.9237 2.3679 -4.1743 37 1 8.2589 1.2088 -3.9673 38 1 3.3866 2.7065 -1.0859 39 1 1.7814 4.3418 -1.5463 40 1 0.3596 6.1333 -2.3160 41 1 -1.8039 6.7698 -3.3511 42 1 -3.3558 4.9751 -4.0778 43 1 -1.1351 -0.2077 -2.9886 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:35 Heat of formation + Delta-G solvation = 42.246130 kcal Electronic energy + Delta-G solvation = -26842.721061 eV Core-core repulsion = 23084.092928 eV Total energy + Delta-G solvation = -3758.628134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.61653 -38.30638 -37.66104 -35.97079 -33.88894 -32.95252 -32.59352 -31.38491 -30.21069 -29.01927 -28.41320 -26.51867 -25.45464 -23.69788 -22.31027 -21.27610 -20.67561 -19.76749 -18.06774 -17.54364 -17.03509 -16.57657 -16.18491 -15.97495 -15.26752 -15.20784 -14.63833 -14.43172 -14.33273 -13.73631 -13.53187 -13.34336 -13.26919 -12.86856 -12.82379 -12.50658 -12.03184 -11.87722 -11.67858 -11.54966 -11.30456 -11.12048 -10.96444 -10.92909 -10.61362 -10.40925 -9.90303 -9.81618 -9.75260 -9.61264 -9.45168 -8.96910 -8.92074 -8.20378 -7.88871 -7.12973 -6.86708 -6.04884 -4.33447 2.90500 3.18486 3.18799 3.20973 3.30928 3.31708 3.41999 3.64668 3.77660 4.10483 4.35030 4.79854 4.87548 4.89646 4.99358 5.02508 5.18189 5.20344 5.28667 5.42512 5.48288 5.51649 5.67710 5.78730 5.83612 5.88574 6.10592 6.13363 6.24520 6.53473 6.67886 6.78302 6.86028 6.90350 6.99398 7.08415 7.29435 7.43482 7.68094 7.81599 7.87115 8.23488 8.35981 8.49483 8.74970 8.86983 9.12343 9.73059 10.33435 10.54951 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.004408 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.460224 B = 6350.571151 C = 7302.510293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.215 4.215 3 C -0.009 4.009 4 C 0.177 3.823 5 H 0.093 0.907 6 C -0.122 4.122 7 C 0.062 3.938 8 O -0.396 6.396 9 C 0.032 3.968 10 N -0.757 5.757 11 C 0.660 3.340 12 O -0.445 6.445 13 N -0.675 5.675 14 C 0.389 3.611 15 C -0.361 4.361 16 C -0.036 4.036 17 C -0.310 4.310 18 C 0.272 3.728 19 C -0.426 4.426 20 H 0.079 0.921 21 C 0.058 3.942 22 N -0.641 5.641 23 Si 0.889 3.111 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.268 1.268 27 N -0.467 5.467 28 H 0.203 0.797 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.382 0.618 39 H 0.392 0.608 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.884 -1.315 3.932 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.215 4.215 3 C -0.047 4.047 4 C 0.071 3.929 5 H 0.111 0.889 6 C -0.160 4.160 7 C -0.015 4.015 8 O -0.315 6.315 9 C -0.064 4.064 10 N -0.417 5.417 11 C 0.358 3.642 12 O -0.308 6.308 13 N -0.324 5.324 14 C 0.149 3.851 15 C -0.387 4.387 16 C -0.060 4.060 17 C -0.333 4.333 18 C 0.147 3.853 19 C -0.457 4.457 20 H 0.097 0.903 21 C -0.172 4.172 22 N -0.259 5.259 23 Si 0.714 3.286 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.193 1.193 27 N -0.186 5.186 28 H 0.220 0.780 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.214 0.786 39 H 0.224 0.776 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.600 -3.382 3.868 14.538 hybrid contribution -0.438 1.316 -0.324 1.425 sum 13.162 -2.066 3.543 13.787 Atomic orbital electron populations 1.24540 0.95502 0.98616 0.97895 1.22260 0.93765 1.02506 1.02961 1.18964 0.86540 1.01093 0.98136 1.20549 0.91857 0.82395 0.98124 0.88906 1.21782 0.94248 1.03215 0.96800 1.22536 0.80399 1.00599 0.97948 1.87820 1.20863 1.86497 1.36332 1.22714 0.98872 0.98511 0.86322 1.45393 1.16769 1.07048 1.72476 1.16418 0.82461 0.83999 0.81343 1.91403 1.47353 1.45922 1.46085 1.42589 1.20267 1.06807 1.62714 1.18338 0.85787 0.89210 0.91735 1.20436 1.02069 0.93626 1.22562 1.20526 0.93219 0.96984 0.95277 1.21609 1.01703 0.94412 1.15558 1.18373 0.88689 0.90183 0.88058 1.19503 1.02559 0.89943 1.33670 0.90275 1.26147 0.95632 0.99715 0.95704 1.70344 1.14929 1.19325 1.21280 0.86696 0.81383 0.80529 0.80016 1.19346 1.20481 1.19315 1.68717 1.03000 1.30324 1.16566 0.77965 0.89894 0.90512 0.89627 0.90584 0.92843 0.93029 0.94071 0.94058 0.89817 0.78560 0.77552 0.89366 0.88819 0.88780 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 17.91 29.55 0.53 -2.37 16 2 C -0.21 -3.81 11.17 -37.12 -0.41 -4.23 16 3 C -0.01 -0.12 5.39 -29.51 -0.16 -0.28 16 4 C 0.18 2.28 2.24 -67.93 -0.15 2.13 16 5 H 0.09 1.48 7.57 -51.93 -0.39 1.08 16 6 C -0.12 -1.20 5.12 -26.73 -0.14 -1.33 16 7 C 0.06 0.67 5.83 37.16 0.22 0.89 16 8 O -0.40 -4.47 10.70 -35.23 -0.38 -4.85 16 9 C 0.03 0.28 11.01 101.05 1.11 1.40 16 10 N -0.76 -10.72 4.50 -58.67 -0.26 -10.99 16 11 C 0.66 13.06 7.83 -86.92 -0.68 12.38 16 12 O -0.45 -10.64 8.95 5.30 0.05 -10.59 16 13 N -0.68 -13.33 5.39 -15.79 -0.09 -13.41 16 14 C 0.39 9.49 7.43 -155.00 -1.15 8.34 16 15 C -0.36 -8.19 9.95 -38.89 -0.39 -8.58 16 16 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 17 C -0.31 -7.88 9.83 -38.66 -0.38 -8.26 16 18 C 0.27 7.63 6.55 -85.00 -0.56 7.07 16 19 C -0.43 -11.69 9.14 -37.74 -0.34 -12.04 16 20 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 21 C 0.06 1.50 5.50 -17.35 -0.10 1.41 16 22 N -0.64 -17.18 8.98 55.55 0.50 -16.68 16 23 Si 0.89 19.21 29.56 -169.99 -5.02 14.18 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 27 N -0.47 -12.94 5.73 -10.26 -0.06 -13.00 16 28 H 0.20 3.94 7.80 -54.08 -0.42 3.52 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.38 4.26 8.62 -40.82 -0.35 3.90 16 39 H 0.39 6.06 8.71 -40.82 -0.36 5.71 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -33.04 366.09 -8.87 -41.90 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -6.12 Total: 12.62 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -3.00 Total: -4.70 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.09 Total: -54.08 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.33 Total: -15.43 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.04 -8.87 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.150 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds