Wall clock time and date at job start Tue Mar 31 2020 11:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46604 * 114.87287 * 3 2 1 5 5 H 1.09000 * 109.47685 * 305.00170 * 4 3 2 6 6 C 1.53002 * 109.46911 * 185.00017 * 4 3 2 7 7 C 1.52997 * 109.47429 * 175.00245 * 6 4 3 8 8 O 1.42891 * 109.47579 * 179.97438 * 7 6 4 9 9 C 1.42900 * 114.00279 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.47124 * 65.00308 * 4 3 2 11 11 C 1.34778 * 119.99972 * 274.99972 * 10 4 3 12 12 O 1.21578 * 119.99862 * 359.97438 * 11 10 4 13 13 N 1.34777 * 120.00023 * 180.02562 * 11 10 4 14 14 C 1.39243 * 119.99975 * 174.85758 * 13 11 10 15 15 C 1.39682 * 119.57546 * 185.11127 * 14 13 11 16 16 C 1.38646 * 119.49415 * 179.97438 * 15 14 13 17 17 C 1.38349 * 118.67217 * 0.02562 * 16 15 14 18 18 C 1.40569 * 119.13334 * 359.97438 * 17 16 15 19 19 C 1.41334 * 119.79166 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99343 * 0.02562 * 19 18 17 21 21 C 1.40025 * 120.00158 * 180.02562 * 19 18 17 22 22 N 1.30740 * 119.99910 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99905 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47306 * 59.99531 * 23 21 19 25 25 H 1.48503 * 109.47004 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46775 * 299.99406 * 23 21 19 27 27 N 1.31903 * 119.57369 * 4.83497 * 14 13 11 28 28 H 4.44645 * 5.63362 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.46772 * 354.87720 * 3 2 1 30 30 H 1.08994 * 109.47159 * 234.87248 * 3 2 1 31 31 H 1.08999 * 109.47233 * 54.99783 * 6 4 3 32 32 H 1.09002 * 109.46846 * 295.00392 * 6 4 3 33 33 H 1.09007 * 109.47142 * 59.99847 * 7 6 4 34 34 H 1.08997 * 109.47128 * 300.00648 * 7 6 4 35 35 H 1.08994 * 109.46876 * 300.00040 * 9 8 7 36 36 H 1.08998 * 109.46877 * 60.00030 * 9 8 7 37 37 H 1.08999 * 109.47007 * 180.02562 * 9 8 7 38 38 H 0.96997 * 119.99931 * 94.99410 * 10 4 3 39 39 H 0.97000 * 119.99869 * 354.85633 * 13 11 10 40 40 H 1.07996 * 120.25355 * 359.95681 * 15 14 13 41 41 H 1.08007 * 120.66376 * 180.02562 * 16 15 14 42 42 H 1.08002 * 120.43498 * 179.97438 * 17 16 15 43 43 H 0.97001 * 119.99582 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.6076 -1.3088 5 1 2.7212 0.0705 -2.1519 6 6 4.6805 0.4951 -1.3634 7 6 5.1799 0.9875 -2.7231 8 8 6.6041 0.8829 -2.7739 9 6 7.1754 1.3204 -4.0086 10 7 2.7674 2.0187 -1.3764 11 6 1.5499 2.3611 -1.8422 12 8 0.7740 1.4989 -2.2066 13 7 1.1929 3.6592 -1.9049 14 6 -0.0205 4.0203 -2.4845 15 6 -0.3340 5.3724 -2.6420 16 6 -1.5425 5.7301 -3.2198 17 6 -2.4068 4.7286 -3.6248 18 6 -2.0338 3.3861 -3.4390 19 6 -2.9059 2.3519 -3.8481 20 1 -3.8553 2.5944 -4.3023 21 6 -2.5390 1.0131 -3.6646 22 7 -1.3894 0.7198 -3.1153 23 14 -3.6914 -0.3538 -4.2060 24 1 -3.9358 -0.2457 -5.6668 25 1 -3.0742 -1.6702 -3.9039 26 1 -4.9801 -0.2320 -3.4781 27 7 -0.8568 3.0813 -2.8827 28 1 -1.0501 0.0001 0.0003 29 1 3.0097 -1.0228 0.0918 30 1 3.0090 0.5921 0.8404 31 1 4.9732 -0.5456 -1.2239 32 1 5.1183 1.1047 -0.5729 33 1 4.8872 2.0282 -2.8626 34 1 4.7420 0.3780 -3.5135 35 1 6.7793 0.7178 -4.8258 36 1 6.9237 2.3679 -4.1743 37 1 8.2589 1.2088 -3.9673 38 1 3.3866 2.7065 -1.0859 39 1 1.7814 4.3418 -1.5463 40 1 0.3596 6.1333 -2.3160 41 1 -1.8039 6.7698 -3.3511 42 1 -3.3558 4.9751 -4.0778 43 1 -1.1351 -0.2077 -2.9886 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:34 Heat of formation + Delta-G solvation = 21.067948 kcal Electronic energy + Delta-G solvation = -26843.639416 eV Core-core repulsion = 23084.092928 eV Total energy + Delta-G solvation = -3759.546489 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.12065 -39.74433 -38.83095 -37.26347 -35.67539 -34.72280 -33.97002 -32.59768 -32.08874 -30.59662 -29.74447 -27.38903 -27.26708 -24.80984 -23.82788 -23.07714 -21.92724 -21.27955 -19.75462 -18.99419 -18.55666 -17.95221 -17.33852 -17.01959 -16.54978 -16.32888 -16.22737 -16.07178 -15.74117 -15.51651 -14.86775 -14.71408 -14.57159 -14.31138 -14.13967 -13.80344 -13.63449 -13.44737 -12.86219 -12.71126 -12.56336 -12.52311 -12.49137 -12.28004 -12.12450 -11.90186 -11.75760 -11.42530 -11.14759 -10.84363 -10.77191 -10.61363 -10.55698 -9.81413 -9.54699 -9.00299 -8.69745 -7.95227 -6.34593 1.03607 1.33594 1.40217 1.49775 1.54206 1.92793 2.15858 2.21829 2.28793 2.74362 2.83074 3.12397 3.47932 3.73994 4.03026 4.11422 4.14221 4.23269 4.39608 4.44456 4.47138 4.53850 4.58947 4.70293 4.78013 4.84047 4.86849 4.89468 4.93933 5.00205 5.09549 5.12484 5.23404 5.35031 5.38434 5.72260 5.86717 5.93469 5.98147 6.11495 6.20779 6.39072 6.49669 6.87914 7.06860 7.14303 7.39237 8.19613 8.45678 8.63679 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.004408 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.460224 B = 6350.571151 C = 7302.510293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C -0.012 4.012 4 C 0.182 3.818 5 H 0.059 0.941 6 C -0.107 4.107 7 C 0.062 3.938 8 O -0.407 6.407 9 C 0.026 3.974 10 N -0.736 5.736 11 C 0.651 3.349 12 O -0.487 6.487 13 N -0.666 5.666 14 C 0.370 3.630 15 C -0.352 4.352 16 C -0.034 4.034 17 C -0.337 4.337 18 C 0.240 3.760 19 C -0.466 4.466 20 H 0.079 0.921 21 C 0.015 3.985 22 N -0.662 5.662 23 Si 0.962 3.038 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.263 1.263 27 N -0.497 5.497 28 H 0.187 0.813 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.102 0.898 38 H 0.402 0.598 39 H 0.413 0.587 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.099 0.901 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.464 -0.694 4.784 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.194 4.194 3 C -0.049 4.049 4 C 0.077 3.923 5 H 0.077 0.923 6 C -0.144 4.144 7 C -0.015 4.015 8 O -0.326 6.326 9 C -0.071 4.071 10 N -0.397 5.397 11 C 0.349 3.651 12 O -0.353 6.353 13 N -0.317 5.317 14 C 0.129 3.871 15 C -0.378 4.378 16 C -0.058 4.058 17 C -0.360 4.360 18 C 0.114 3.886 19 C -0.497 4.497 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.280 5.280 23 Si 0.784 3.216 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.188 1.188 27 N -0.216 5.216 28 H 0.204 0.796 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.121 0.879 38 H 0.238 0.762 39 H 0.249 0.751 40 H 0.145 0.855 41 H 0.150 0.850 42 H 0.117 0.883 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.255 -2.718 4.752 17.152 hybrid contribution -1.080 1.266 -0.566 1.758 sum 15.175 -1.452 4.186 15.809 Atomic orbital electron populations 1.24580 0.96093 1.01286 1.00427 1.23274 0.95170 1.00246 1.00745 1.19297 0.83189 1.03611 0.98845 1.20551 0.93939 0.80906 0.96935 0.92314 1.21656 0.91200 1.04794 0.96795 1.22498 0.80588 1.00125 0.98271 1.87790 1.20642 1.86719 1.37471 1.22896 0.99932 0.98701 0.85529 1.45132 1.15076 1.08388 1.71068 1.16722 0.83598 0.83557 0.81260 1.91408 1.49100 1.46969 1.47779 1.42463 1.19242 1.07732 1.62229 1.18821 0.86756 0.89843 0.91665 1.20888 1.02382 0.93831 1.20678 1.20973 0.92683 0.98386 0.93802 1.21773 1.02857 0.94334 1.17066 1.18824 0.89428 0.91565 0.88768 1.19783 1.03133 0.91175 1.35635 0.90253 1.26867 0.97258 1.01497 0.95644 1.70533 1.16326 1.19243 1.21926 0.85572 0.79190 0.77315 0.79482 1.18948 1.20007 1.18787 1.68693 1.03474 1.32040 1.17397 0.79560 0.86718 0.87717 0.87900 0.88250 0.93252 0.94448 0.94076 0.93666 0.87943 0.76247 0.75091 0.85511 0.84965 0.88265 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.50 17.91 74.32 1.33 -7.17 16 2 C -0.19 -6.87 11.17 31.13 0.35 -6.53 16 3 C -0.01 -0.27 5.39 28.79 0.16 -0.12 16 4 C 0.18 4.34 2.24 44.99 0.10 4.44 16 5 H 0.06 1.86 7.57 -2.39 -0.02 1.84 16 6 C -0.11 -1.72 5.12 30.59 0.16 -1.57 16 7 C 0.06 1.22 5.83 71.98 0.42 1.64 16 8 O -0.41 -8.17 10.70 -148.98 -1.59 -9.76 16 9 C 0.03 0.40 11.01 113.37 1.25 1.65 16 10 N -0.74 -19.48 4.50 -457.81 -2.06 -21.54 16 11 C 0.65 25.57 7.83 179.05 1.40 26.97 16 12 O -0.49 -23.96 8.95 -3.96 -0.04 -23.99 16 13 N -0.67 -25.63 5.39 -322.13 -1.74 -27.36 16 14 C 0.37 17.96 7.43 133.26 0.99 18.95 16 15 C -0.35 -15.30 9.95 22.72 0.23 -15.08 16 16 C -0.03 -1.53 10.15 22.39 0.23 -1.30 16 17 C -0.34 -17.44 9.83 22.87 0.22 -17.21 16 18 C 0.24 13.95 6.55 40.19 0.26 14.21 16 19 C -0.47 -26.83 9.14 23.47 0.21 -26.62 16 20 H 0.08 4.33 7.85 -2.91 -0.02 4.31 16 21 C 0.01 0.79 5.50 85.29 0.47 1.26 16 22 N -0.66 -37.31 8.98 21.84 0.20 -37.12 16 23 Si 0.96 41.21 29.56 68.60 2.03 43.24 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 27 N -0.50 -28.34 5.73 -186.37 -1.07 -29.41 16 28 H 0.19 8.01 7.80 -4.41 -0.03 7.97 16 29 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.00 7.75 -2.38 -0.02 0.99 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.40 7.66 8.62 -92.71 -0.80 6.86 16 39 H 0.41 11.77 8.71 -92.71 -0.81 10.96 16 40 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 41 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 42 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 43 H 0.27 14.49 8.29 -92.71 -0.77 13.72 16 Total: -1.00 -76.25 366.09 2.93 -73.32 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: -0.58 Total: 39.10 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 7.78 Total: -6.47 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -4.67 Total: -115.44 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -1.63 Total: -33.76 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -76.25 2.93 -73.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.384 kcal (2) G-P(sol) polarization free energy of solvation -76.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds