Wall clock time and date at job start Tue Mar 31 2020 11:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46669 * 143.56537 * 3 2 1 5 5 H 1.09003 * 109.47328 * 54.99971 * 4 3 2 6 6 C 1.53008 * 109.47047 * 174.99586 * 4 3 2 7 7 C 1.52999 * 109.47199 * 184.99676 * 6 4 3 8 8 O 1.42896 * 109.46912 * 179.97438 * 7 6 4 9 9 C 1.42902 * 113.99931 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47314 * 294.99511 * 4 3 2 11 11 C 1.34780 * 119.99733 * 85.00031 * 10 4 3 12 12 O 1.21565 * 120.00211 * 0.02562 * 11 10 4 13 13 N 1.34777 * 119.99456 * 180.02562 * 11 10 4 14 14 C 1.39251 * 119.99653 * 174.94537 * 13 11 10 15 15 C 1.39689 * 119.57691 * 185.51623 * 14 13 11 16 16 C 1.38641 * 119.49462 * 179.97438 * 15 14 13 17 17 C 1.38346 * 118.67507 * 359.97438 * 16 15 14 18 18 C 1.40581 * 119.13016 * 0.02562 * 17 16 15 19 19 C 1.41335 * 119.78628 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99966 * 0.02562 * 19 18 17 21 21 C 1.40024 * 119.99851 * 180.02562 * 19 18 17 22 22 N 1.30746 * 120.00081 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00178 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46841 * 59.99846 * 23 21 19 25 25 H 1.48496 * 109.47100 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47013 * 299.99978 * 23 21 19 27 27 N 1.31901 * 119.57355 * 5.24488 * 14 13 11 28 28 H 4.44646 * 5.63369 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.47018 * 263.55951 * 3 2 1 30 30 H 1.08992 * 109.47284 * 23.56133 * 3 2 1 31 31 H 1.08998 * 109.47060 * 305.00102 * 6 4 3 32 32 H 1.09004 * 109.46506 * 65.00111 * 6 4 3 33 33 H 1.08998 * 109.47462 * 300.00179 * 7 6 4 34 34 H 1.08999 * 109.46873 * 60.00028 * 7 6 4 35 35 H 1.09000 * 109.47301 * 179.97438 * 9 8 7 36 36 H 1.08992 * 109.47490 * 300.00441 * 9 8 7 37 37 H 1.09000 * 109.46558 * 60.00581 * 9 8 7 38 38 H 0.96999 * 120.00176 * 265.00412 * 10 4 3 39 39 H 0.96998 * 120.00354 * 354.94437 * 13 11 10 40 40 H 1.08002 * 120.24872 * 359.95460 * 15 14 13 41 41 H 1.08003 * 120.66361 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.43778 * 179.97438 * 17 16 15 43 43 H 0.96994 * 120.00391 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.1614 -0.8567 5 1 2.7203 2.0949 -0.4996 6 6 4.6803 1.2384 -0.7566 7 6 5.1793 2.4721 -1.5114 8 8 6.6033 2.5443 -1.4174 9 6 7.1743 3.6666 -2.0931 10 7 2.7680 0.9447 -2.2528 11 6 1.5505 1.3318 -2.6821 12 8 0.7740 1.8612 -1.9110 13 7 1.1939 1.1319 -3.9664 14 6 -0.0992 1.4346 -4.3852 15 6 -0.4945 1.1171 -5.6868 16 6 -1.7826 1.4187 -6.1017 17 6 -2.6426 2.0290 -5.2063 18 6 -2.1851 2.3231 -3.9099 19 6 -3.0519 2.9470 -2.9841 20 1 -4.0623 3.1957 -3.2734 21 6 -2.6007 3.2424 -1.6920 22 7 -1.3776 2.9408 -1.3417 23 14 -3.7464 4.0663 -0.4681 24 1 -4.9347 3.2041 -0.2448 25 1 -3.0334 4.2686 0.8187 26 1 -4.1822 5.3804 -1.0051 27 7 -0.9367 2.0126 -3.5459 28 1 -1.0502 -0.0002 0.0004 29 1 3.0093 0.1161 1.0211 30 1 3.0098 -0.9411 -0.4108 31 1 4.9724 1.3105 0.2910 32 1 5.1188 0.3421 -1.1953 33 1 4.8871 2.4000 -2.5591 34 1 4.7407 3.3684 -1.0728 35 1 8.2577 3.6497 -1.9742 36 1 6.9240 3.6186 -3.1528 37 1 6.7768 4.5878 -1.6672 38 1 3.3877 0.5226 -2.8682 39 1 1.8380 0.7773 -4.5991 40 1 0.1980 0.6406 -6.3648 41 1 -2.1083 1.1812 -7.1037 42 1 -3.6521 2.2770 -5.4995 43 1 -1.0651 3.1451 -0.4465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:38 Heat of formation + Delta-G solvation = 42.294725 kcal Electronic energy + Delta-G solvation = -26849.059842 eV Core-core repulsion = 23090.433815 eV Total energy + Delta-G solvation = -3758.626027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.61677 -38.30947 -37.66326 -35.96925 -33.88875 -32.95269 -32.57771 -31.38528 -30.20981 -29.01849 -28.40438 -26.52410 -25.45449 -23.69691 -22.31063 -21.27518 -20.67791 -19.76484 -18.06327 -17.53482 -17.02855 -16.58499 -16.18805 -15.98297 -15.23776 -15.19020 -14.61221 -14.49741 -14.37245 -13.73814 -13.52229 -13.34532 -13.12365 -12.97019 -12.82281 -12.50032 -12.03197 -11.87732 -11.67154 -11.56315 -11.30970 -11.12063 -10.96234 -10.92719 -10.61312 -10.40897 -9.90053 -9.82281 -9.74358 -9.60908 -9.43002 -8.97307 -8.91525 -8.19884 -7.88807 -7.13020 -6.86575 -6.04899 -4.33410 2.90557 3.18716 3.18891 3.20966 3.30926 3.31589 3.42465 3.66857 3.78567 4.10459 4.35413 4.79851 4.88064 4.89175 4.99520 5.01867 5.17206 5.19879 5.29269 5.41868 5.47625 5.51704 5.67854 5.78967 5.84497 5.88433 6.10026 6.14256 6.24758 6.53569 6.68040 6.81006 6.86084 6.90417 6.98591 7.08574 7.29331 7.43545 7.68153 7.81616 7.87205 8.23513 8.36012 8.51898 8.74998 8.87016 9.12391 9.73090 10.33494 10.54877 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011985 B = 0.004356 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.730640 B = 6426.992664 C = 7353.845324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.217 4.217 3 C -0.009 4.009 4 C 0.177 3.823 5 H 0.093 0.907 6 C -0.123 4.123 7 C 0.062 3.938 8 O -0.396 6.396 9 C 0.032 3.968 10 N -0.757 5.757 11 C 0.660 3.340 12 O -0.445 6.445 13 N -0.675 5.675 14 C 0.389 3.611 15 C -0.361 4.361 16 C -0.036 4.036 17 C -0.310 4.310 18 C 0.272 3.728 19 C -0.426 4.426 20 H 0.079 0.921 21 C 0.058 3.942 22 N -0.641 5.641 23 Si 0.889 3.111 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.269 1.269 27 N -0.467 5.467 28 H 0.203 0.797 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.382 0.618 39 H 0.392 0.608 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.121 -2.989 1.924 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.217 4.217 3 C -0.047 4.047 4 C 0.071 3.929 5 H 0.111 0.889 6 C -0.161 4.161 7 C -0.015 4.015 8 O -0.315 6.315 9 C -0.064 4.064 10 N -0.417 5.417 11 C 0.358 3.642 12 O -0.308 6.308 13 N -0.324 5.324 14 C 0.149 3.851 15 C -0.387 4.387 16 C -0.060 4.060 17 C -0.333 4.333 18 C 0.147 3.853 19 C -0.457 4.457 20 H 0.097 0.903 21 C -0.172 4.172 22 N -0.259 5.259 23 Si 0.714 3.286 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.193 1.193 27 N -0.186 5.186 28 H 0.220 0.780 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.214 0.786 39 H 0.224 0.776 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.892 -2.375 3.899 14.623 hybrid contribution -0.464 -0.011 -1.341 1.419 sum 13.428 -2.386 2.559 13.877 Atomic orbital electron populations 1.24555 0.95504 0.98028 0.98257 1.22249 0.93750 1.02906 1.02769 1.18953 0.86555 0.99092 1.00078 1.20545 0.91834 0.99098 0.81437 0.88913 1.21788 0.94273 0.97986 1.02024 1.22536 0.80406 0.98425 1.00100 1.87824 1.20889 1.47136 1.75655 1.22714 0.98888 0.88700 0.96117 1.45393 1.16905 1.68482 1.10908 1.16413 0.82500 0.82000 0.83293 1.91399 1.47265 1.40395 1.51710 1.42590 1.12120 1.68072 1.09616 1.18338 0.84723 0.92775 0.89218 1.20439 0.98878 1.22410 0.96958 1.20523 0.93002 0.95548 0.96936 1.21612 0.99957 1.14608 0.97114 1.18374 0.88479 0.88929 0.89513 1.19499 0.98281 1.32577 0.95317 0.90284 1.26142 0.95528 0.96368 0.99134 1.70339 1.12514 1.25339 1.17678 0.86698 0.81288 0.80561 0.80092 1.19324 1.20491 1.19344 1.68713 1.02622 1.16525 1.30705 0.77973 0.89924 0.90534 0.89624 0.90580 0.92856 0.93037 0.89817 0.94065 0.94076 0.78560 0.77561 0.89371 0.88825 0.88783 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 17.91 29.55 0.53 -2.39 16 2 C -0.22 -3.90 11.17 -37.12 -0.41 -4.32 16 3 C -0.01 -0.11 5.39 -29.52 -0.16 -0.27 16 4 C 0.18 2.28 2.24 -67.93 -0.15 2.13 16 5 H 0.09 1.47 7.57 -51.93 -0.39 1.07 16 6 C -0.12 -1.19 5.12 -26.73 -0.14 -1.33 16 7 C 0.06 0.67 5.83 37.16 0.22 0.88 16 8 O -0.40 -4.42 10.70 -35.23 -0.38 -4.79 16 9 C 0.03 0.28 11.01 101.05 1.11 1.39 16 10 N -0.76 -10.72 4.50 -58.68 -0.26 -10.98 16 11 C 0.66 13.05 7.83 -86.92 -0.68 12.37 16 12 O -0.45 -10.63 8.95 5.31 0.05 -10.58 16 13 N -0.68 -13.32 5.39 -15.79 -0.09 -13.41 16 14 C 0.39 9.49 7.43 -154.99 -1.15 8.34 16 15 C -0.36 -8.20 9.96 -38.89 -0.39 -8.58 16 16 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 17 C -0.31 -7.88 9.83 -38.66 -0.38 -8.26 16 18 C 0.27 7.62 6.55 -84.99 -0.56 7.06 16 19 C -0.43 -11.67 9.14 -37.74 -0.34 -12.01 16 20 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 21 C 0.06 1.51 5.50 -17.34 -0.10 1.41 16 22 N -0.64 -17.17 8.99 55.55 0.50 -16.67 16 23 Si 0.89 19.18 29.56 -169.99 -5.02 14.16 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 N -0.47 -12.91 5.73 -10.25 -0.06 -12.96 16 28 H 0.20 4.06 7.80 -54.08 -0.42 3.64 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.58 7.75 -51.93 -0.40 0.18 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.38 4.26 8.62 -40.82 -0.35 3.90 16 39 H 0.39 6.05 8.71 -40.82 -0.36 5.69 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.09 2.23 8.06 -52.48 -0.42 1.81 16 43 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -32.97 366.10 -8.87 -41.84 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.12 Total: 12.69 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -3.00 Total: -4.80 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.09 Total: -54.03 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.33 Total: -15.37 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.97 -8.87 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.135 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds