Wall clock time and date at job start Tue Mar 31 2020 11:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46669 * 143.56537 * 3 2 1 5 5 H 1.09003 * 109.47328 * 54.99971 * 4 3 2 6 6 C 1.53008 * 109.47047 * 174.99586 * 4 3 2 7 7 C 1.52999 * 109.47199 * 184.99676 * 6 4 3 8 8 O 1.42896 * 109.46912 * 179.97438 * 7 6 4 9 9 C 1.42902 * 113.99931 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47314 * 294.99511 * 4 3 2 11 11 C 1.34780 * 119.99733 * 85.00031 * 10 4 3 12 12 O 1.21565 * 120.00211 * 0.02562 * 11 10 4 13 13 N 1.34777 * 119.99456 * 180.02562 * 11 10 4 14 14 C 1.39251 * 119.99653 * 174.94537 * 13 11 10 15 15 C 1.39689 * 119.57691 * 185.51623 * 14 13 11 16 16 C 1.38641 * 119.49462 * 179.97438 * 15 14 13 17 17 C 1.38346 * 118.67507 * 359.97438 * 16 15 14 18 18 C 1.40581 * 119.13016 * 0.02562 * 17 16 15 19 19 C 1.41335 * 119.78628 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99966 * 0.02562 * 19 18 17 21 21 C 1.40024 * 119.99851 * 180.02562 * 19 18 17 22 22 N 1.30746 * 120.00081 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00178 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46841 * 59.99846 * 23 21 19 25 25 H 1.48496 * 109.47100 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47013 * 299.99978 * 23 21 19 27 27 N 1.31901 * 119.57355 * 5.24488 * 14 13 11 28 28 H 4.44646 * 5.63369 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.47018 * 263.55951 * 3 2 1 30 30 H 1.08992 * 109.47284 * 23.56133 * 3 2 1 31 31 H 1.08998 * 109.47060 * 305.00102 * 6 4 3 32 32 H 1.09004 * 109.46506 * 65.00111 * 6 4 3 33 33 H 1.08998 * 109.47462 * 300.00179 * 7 6 4 34 34 H 1.08999 * 109.46873 * 60.00028 * 7 6 4 35 35 H 1.09000 * 109.47301 * 179.97438 * 9 8 7 36 36 H 1.08992 * 109.47490 * 300.00441 * 9 8 7 37 37 H 1.09000 * 109.46558 * 60.00581 * 9 8 7 38 38 H 0.96999 * 120.00176 * 265.00412 * 10 4 3 39 39 H 0.96998 * 120.00354 * 354.94437 * 13 11 10 40 40 H 1.08002 * 120.24872 * 359.95460 * 15 14 13 41 41 H 1.08003 * 120.66361 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.43778 * 179.97438 * 17 16 15 43 43 H 0.96994 * 120.00391 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.1614 -0.8567 5 1 2.7203 2.0949 -0.4996 6 6 4.6803 1.2384 -0.7566 7 6 5.1793 2.4721 -1.5114 8 8 6.6033 2.5443 -1.4174 9 6 7.1743 3.6666 -2.0931 10 7 2.7680 0.9447 -2.2528 11 6 1.5505 1.3318 -2.6821 12 8 0.7740 1.8612 -1.9110 13 7 1.1939 1.1319 -3.9664 14 6 -0.0992 1.4346 -4.3852 15 6 -0.4945 1.1171 -5.6868 16 6 -1.7826 1.4187 -6.1017 17 6 -2.6426 2.0290 -5.2063 18 6 -2.1851 2.3231 -3.9099 19 6 -3.0519 2.9470 -2.9841 20 1 -4.0623 3.1957 -3.2734 21 6 -2.6007 3.2424 -1.6920 22 7 -1.3776 2.9408 -1.3417 23 14 -3.7464 4.0663 -0.4681 24 1 -4.9347 3.2041 -0.2448 25 1 -3.0334 4.2686 0.8187 26 1 -4.1822 5.3804 -1.0051 27 7 -0.9367 2.0126 -3.5459 28 1 -1.0502 -0.0002 0.0004 29 1 3.0093 0.1161 1.0211 30 1 3.0098 -0.9411 -0.4108 31 1 4.9724 1.3105 0.2910 32 1 5.1188 0.3421 -1.1953 33 1 4.8871 2.4000 -2.5591 34 1 4.7407 3.3684 -1.0728 35 1 8.2577 3.6497 -1.9742 36 1 6.9240 3.6186 -3.1528 37 1 6.7768 4.5878 -1.6672 38 1 3.3877 0.5226 -2.8682 39 1 1.8380 0.7773 -4.5991 40 1 0.1980 0.6406 -6.3648 41 1 -2.1083 1.1812 -7.1037 42 1 -3.6521 2.2770 -5.4995 43 1 -1.0651 3.1451 -0.4465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:37 Heat of formation + Delta-G solvation = 21.168346 kcal Electronic energy + Delta-G solvation = -26849.975951 eV Core-core repulsion = 23090.433815 eV Total energy + Delta-G solvation = -3759.542135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12002 -39.74177 -38.82648 -37.26230 -35.67455 -34.72319 -33.97333 -32.59395 -32.08745 -30.59614 -29.74250 -27.38947 -27.26185 -24.80560 -23.82654 -23.07493 -21.92789 -21.27555 -19.75223 -19.00294 -18.54663 -17.97190 -17.31193 -17.01857 -16.54499 -16.26764 -16.21030 -16.10494 -15.82224 -15.52244 -14.86443 -14.65123 -14.52342 -14.38149 -14.13767 -13.81031 -13.61325 -13.46256 -12.86165 -12.71103 -12.55606 -12.52143 -12.49319 -12.28022 -12.12027 -11.89464 -11.75641 -11.42394 -11.15356 -10.84642 -10.77163 -10.60788 -10.55592 -9.81154 -9.54456 -9.00352 -8.69562 -7.95235 -6.34405 1.03734 1.33783 1.40301 1.49822 1.54224 1.92707 2.15410 2.21254 2.28816 2.74748 2.83460 3.12607 3.48168 3.73495 4.03301 4.11770 4.14639 4.23465 4.39681 4.44620 4.47442 4.54358 4.59377 4.70229 4.77985 4.84112 4.87129 4.89530 4.94109 5.00279 5.09973 5.12560 5.23575 5.35034 5.37911 5.72394 5.86868 5.93548 5.98258 6.11602 6.21473 6.39169 6.49776 6.88073 7.06297 7.14477 7.39375 8.19747 8.45782 8.63626 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011985 B = 0.004356 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.730640 B = 6426.992664 C = 7353.845324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C -0.012 4.012 4 C 0.183 3.817 5 H 0.060 0.940 6 C -0.107 4.107 7 C 0.062 3.938 8 O -0.407 6.407 9 C 0.026 3.974 10 N -0.736 5.736 11 C 0.651 3.349 12 O -0.487 6.487 13 N -0.666 5.666 14 C 0.370 3.630 15 C -0.353 4.353 16 C -0.034 4.034 17 C -0.337 4.337 18 C 0.240 3.760 19 C -0.466 4.466 20 H 0.079 0.921 21 C 0.016 3.984 22 N -0.662 5.662 23 Si 0.962 3.038 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.264 1.264 27 N -0.496 5.496 28 H 0.185 0.815 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.102 0.898 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.402 0.598 39 H 0.413 0.587 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.099 0.901 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.740 -3.920 1.487 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.193 4.193 3 C -0.049 4.049 4 C 0.077 3.923 5 H 0.078 0.922 6 C -0.145 4.145 7 C -0.015 4.015 8 O -0.327 6.327 9 C -0.071 4.071 10 N -0.397 5.397 11 C 0.349 3.651 12 O -0.352 6.352 13 N -0.317 5.317 14 C 0.129 3.871 15 C -0.378 4.378 16 C -0.059 4.059 17 C -0.361 4.361 18 C 0.114 3.886 19 C -0.497 4.497 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.280 5.280 23 Si 0.784 3.216 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.189 1.189 27 N -0.215 5.215 28 H 0.202 0.798 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.238 0.762 39 H 0.249 0.751 40 H 0.145 0.855 41 H 0.150 0.850 42 H 0.117 0.883 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.587 -3.341 3.426 17.264 hybrid contribution -1.119 0.222 -1.336 1.757 sum 15.468 -3.119 2.090 15.918 Atomic orbital electron populations 1.24553 0.96056 1.00765 1.01032 1.23276 0.95156 1.00522 1.00397 1.19301 0.83101 1.00259 1.02278 1.20548 0.93958 0.97591 0.80214 0.92191 1.21657 0.91177 0.98410 1.03221 1.22499 0.80579 0.98443 0.99952 1.87794 1.20691 1.48074 1.76108 1.22895 0.99916 0.88047 0.96197 1.45133 1.15228 1.67371 1.11934 1.16718 0.83636 0.81810 0.82961 1.91404 1.49031 1.42140 1.52673 1.42465 1.11079 1.67756 1.10391 1.18821 0.85967 0.92413 0.89872 1.20891 0.99377 1.20778 0.96766 1.20968 0.92739 0.93989 0.98164 1.21777 1.00953 1.16217 0.97109 1.18824 0.89252 0.89651 0.90835 1.19776 0.98657 1.34582 0.96659 0.90271 1.26853 0.97131 0.96803 1.00385 1.70529 1.13959 1.25971 1.17563 0.85576 0.79099 0.79397 0.77513 1.18854 1.20032 1.18890 1.68690 1.02988 1.17610 1.32215 0.79771 0.86688 0.87796 0.87920 0.88310 0.93163 0.94372 0.87998 0.93625 0.94052 0.76246 0.75090 0.85535 0.84992 0.88278 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.70 17.91 74.32 1.33 -7.37 16 2 C -0.19 -6.96 11.17 31.13 0.35 -6.61 16 3 C -0.01 -0.28 5.39 28.79 0.16 -0.12 16 4 C 0.18 4.33 2.24 44.99 0.10 4.43 16 5 H 0.06 1.88 7.57 -2.39 -0.02 1.86 16 6 C -0.11 -1.71 5.12 30.60 0.16 -1.55 16 7 C 0.06 1.20 5.83 71.98 0.42 1.62 16 8 O -0.41 -8.05 10.70 -148.98 -1.59 -9.65 16 9 C 0.03 0.39 11.01 113.37 1.25 1.64 16 10 N -0.74 -19.44 4.50 -457.82 -2.06 -21.50 16 11 C 0.65 25.53 7.83 179.05 1.40 26.93 16 12 O -0.49 -23.92 8.95 -3.92 -0.04 -23.95 16 13 N -0.67 -25.61 5.39 -322.13 -1.74 -27.34 16 14 C 0.37 17.96 7.43 133.26 0.99 18.95 16 15 C -0.35 -15.34 9.96 22.72 0.23 -15.11 16 16 C -0.03 -1.54 10.15 22.39 0.23 -1.31 16 17 C -0.34 -17.45 9.83 22.87 0.22 -17.23 16 18 C 0.24 13.95 6.55 40.19 0.26 14.21 16 19 C -0.47 -26.76 9.14 23.47 0.21 -26.54 16 20 H 0.08 4.31 7.85 -2.91 -0.02 4.29 16 21 C 0.02 0.84 5.50 85.29 0.47 1.31 16 22 N -0.66 -37.29 8.99 21.84 0.20 -37.09 16 23 Si 0.96 41.19 29.56 68.60 2.03 43.21 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 27 N -0.50 -28.24 5.73 -186.35 -1.07 -29.31 16 28 H 0.18 8.17 7.80 -4.41 -0.03 8.14 16 29 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.05 0.99 7.75 -2.39 -0.02 0.97 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 37 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.40 7.64 8.62 -92.71 -0.80 6.84 16 39 H 0.41 11.74 8.71 -92.71 -0.81 10.93 16 40 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 42 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 43 H 0.27 14.48 8.29 -92.71 -0.77 13.71 16 Total: -1.00 -76.17 366.10 2.93 -73.23 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -0.58 Total: 39.15 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 7.78 Total: -6.75 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -4.67 Total: -115.25 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.63 Total: -33.60 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -76.17 2.93 -73.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.401 kcal (2) G-P(sol) polarization free energy of solvation -76.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds