Wall clock time and date at job start Tue Mar 31 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00095 * 2 1 4 4 C 1.50707 * 109.47046 * 180.02562 * 3 2 1 5 5 C 1.29456 * 117.69388 * 359.97438 * 4 3 2 6 6 C 1.50322 * 123.65057 * 180.88536 * 5 4 3 7 7 N 1.47007 * 109.16496 * 349.02111 * 6 5 4 8 8 C 1.34772 * 121.37660 * 222.94969 * 7 6 5 9 9 O 1.21576 * 120.00545 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00090 * 0.02562 * 8 7 6 11 11 C 1.39248 * 120.00616 * 185.12213 * 10 8 7 12 12 C 1.39677 * 119.57807 * 174.58813 * 11 10 8 13 13 C 1.38646 * 119.49345 * 179.97438 * 12 11 10 14 14 C 1.38352 * 118.67153 * 0.27947 * 13 12 11 15 15 C 1.40572 * 119.13103 * 359.43647 * 14 13 12 16 16 C 1.41334 * 119.78974 * 180.31648 * 15 14 13 17 17 H 1.08003 * 119.99504 * 0.25031 * 16 15 14 18 18 C 1.40027 * 120.00214 * 180.25447 * 16 15 14 19 19 N 1.30746 * 119.99640 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00095 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47175 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46929 * 119.99855 * 20 18 16 23 23 H 1.48496 * 109.47483 * 239.99811 * 20 18 16 24 24 N 1.31912 * 119.57125 * 354.56894 * 11 10 8 25 25 C 1.47340 * 117.25120 * 43.22009 * 7 6 5 26 26 C 1.49964 * 117.69306 * 180.02562 * 4 3 2 27 27 H 1.09000 * 109.47015 * 60.00187 * 1 2 3 28 28 H 1.08995 * 109.47340 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46762 * 300.00231 * 1 2 3 30 30 H 1.08994 * 109.47322 * 60.00219 * 3 2 1 31 31 H 1.08990 * 109.47054 * 300.00059 * 3 2 1 32 32 H 1.07995 * 118.17315 * 0.85877 * 5 4 3 33 33 H 1.09002 * 109.51790 * 229.11660 * 6 5 4 34 34 H 1.09002 * 109.52550 * 108.92850 * 6 5 4 35 35 H 0.97001 * 119.99661 * 5.11613 * 10 8 7 36 36 H 1.07995 * 120.25444 * 359.97438 * 12 11 10 37 37 H 1.08005 * 120.66834 * 180.02562 * 13 12 11 38 38 H 1.08003 * 120.43368 * 179.70148 * 14 13 12 39 39 H 0.96998 * 119.99367 * 180.02562 * 19 18 16 40 40 H 1.09006 * 109.77728 * 57.53849 * 25 7 6 41 41 H 1.09000 * 109.77979 * 178.34352 * 25 7 6 42 42 H 1.09002 * 109.31107 * 281.26312 * 26 4 3 43 43 H 1.09001 * 109.31771 * 40.68803 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.0218 -0.0038 -0.0005 6 6 5.4998 -0.2774 0.0182 7 7 6.2260 0.9766 -0.2290 8 6 7.2881 1.0209 -1.0574 9 8 7.8701 2.0718 -1.2442 10 7 7.7045 -0.0998 -1.6797 11 6 8.8638 -0.0783 -2.4508 12 6 9.3497 -1.2678 -2.9985 13 6 10.5038 -1.2444 -3.7664 14 6 11.1460 -0.0347 -3.9628 15 6 10.6038 1.1288 -3.3899 16 6 11.2447 2.3729 -3.5871 17 1 12.1459 2.4281 -4.1798 18 6 10.7114 3.5339 -3.0141 19 7 9.6207 3.4670 -2.2962 20 14 11.5589 5.1781 -3.2742 21 1 12.7657 4.9850 -4.1179 22 1 10.6262 6.1140 -3.9522 23 1 11.9582 5.7427 -1.9601 24 7 9.4887 1.0653 -2.6550 25 6 5.7485 2.1820 0.4711 26 6 4.3122 2.4551 -0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8463 -0.8899 32 1 3.3472 -0.8470 -0.0143 33 1 5.7462 -1.0004 -0.7594 34 1 5.7840 -0.6771 0.9917 35 1 7.1966 -0.9214 -1.5904 36 1 8.8304 -2.1987 -2.8251 37 1 10.8960 -2.1528 -4.1993 38 1 12.0497 0.0156 -4.5520 39 1 9.2511 4.2713 -1.8996 40 1 5.7597 2.0119 1.5477 41 1 6.3879 3.0295 0.2242 42 1 4.3341 2.8678 -1.0088 43 1 3.8449 3.1756 0.6711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881147212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:11 Heat of formation + Delta-G solvation = 19.880914 kcal Electronic energy + Delta-G solvation = -26488.132037 eV Core-core repulsion = 22728.534075 eV Total energy + Delta-G solvation = -3759.597962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.97556 -38.71294 -37.85268 -36.55478 -34.10506 -33.20203 -32.86449 -30.95088 -30.22908 -29.00270 -27.99554 -26.20059 -25.42125 -24.02541 -23.41351 -21.68031 -21.10767 -19.51900 -18.29603 -17.44078 -16.94967 -16.64086 -16.17981 -16.10474 -15.42670 -15.02771 -14.86207 -14.47520 -14.29461 -14.09812 -13.66048 -13.41037 -13.14099 -13.03289 -12.90419 -12.79116 -12.31465 -12.07654 -11.94216 -11.77287 -11.62852 -11.17049 -11.11215 -10.88845 -10.61343 -10.57633 -10.40779 -10.10409 -9.85364 -9.64890 -9.07096 -8.97333 -8.81338 -8.11766 -7.89083 -7.15395 -6.88035 -6.05448 -4.33224 2.14280 2.88706 3.14150 3.18191 3.21376 3.24934 3.31896 3.46304 4.11593 4.21864 4.44992 4.63410 4.93517 4.95792 4.99265 5.00812 5.11792 5.18916 5.25028 5.27340 5.34993 5.43626 5.57654 5.65213 5.80493 6.05497 6.09749 6.13499 6.16465 6.43386 6.54184 6.63702 6.67725 6.85889 6.90639 6.96462 7.06415 7.27997 7.43222 7.67699 7.79219 7.87319 8.22549 8.34032 8.68577 8.84901 9.12276 9.62930 10.33186 10.55538 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.003491 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.742633 B = 8019.534451 C = 9334.898077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.095 3.905 4 C -0.126 4.126 5 C -0.151 4.151 6 C 0.143 3.857 7 N -0.643 5.643 8 C 0.673 3.327 9 O -0.460 6.460 10 N -0.673 5.673 11 C 0.387 3.613 12 C -0.358 4.358 13 C -0.036 4.036 14 C -0.307 4.307 15 C 0.271 3.729 16 C -0.425 4.425 17 H 0.082 0.918 18 C 0.056 3.944 19 N -0.648 5.648 20 Si 0.894 3.106 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.276 1.276 24 N -0.471 5.471 25 C 0.138 3.862 26 C -0.095 4.095 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.394 0.606 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.271 0.729 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.335 -3.716 7.361 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C 0.019 3.981 4 C -0.127 4.127 5 C -0.169 4.169 6 C 0.019 3.981 7 N -0.386 5.386 8 C 0.373 3.627 9 O -0.324 6.324 10 N -0.323 5.323 11 C 0.147 3.853 12 C -0.384 4.384 13 C -0.060 4.060 14 C -0.330 4.330 15 C 0.146 3.854 16 C -0.456 4.456 17 H 0.100 0.900 18 C -0.173 4.173 19 N -0.267 5.267 20 Si 0.719 3.281 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.201 1.201 24 N -0.190 5.190 25 C 0.014 3.986 26 C -0.134 4.134 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.229 0.771 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.223 -2.096 7.718 18.088 hybrid contribution -0.101 -0.500 -0.413 0.656 sum -16.325 -2.595 7.306 18.072 Atomic orbital electron populations 1.22729 0.80977 1.02785 0.99954 1.87837 1.19608 1.27888 1.95476 1.21391 0.91854 0.84506 1.00341 1.20564 0.93146 0.95752 1.03198 1.22289 0.96174 0.98161 1.00308 1.20370 0.89234 0.87332 1.01115 1.47599 1.32328 1.09205 1.49439 1.16278 0.80879 0.85558 0.80009 1.91371 1.53055 1.26531 1.61445 1.42726 1.26577 1.11863 1.51108 1.18360 0.86090 0.91145 0.89692 1.20431 1.05116 0.95811 1.17050 1.20539 0.93815 0.96331 0.95320 1.21616 1.04550 0.94060 1.12780 1.18404 0.87635 0.92191 0.87204 1.19597 1.08612 0.90567 1.26817 0.89990 1.26197 0.95331 1.00446 0.95341 1.70368 1.12254 1.28523 1.15534 0.86487 0.80283 0.82553 0.78788 1.18668 1.20149 1.20131 1.68697 1.09770 1.21068 1.19461 1.21417 0.93227 0.88945 0.95009 1.20753 0.95279 0.94604 1.02726 0.94052 0.89587 0.94105 0.92398 0.92427 0.85451 0.90063 0.90986 0.77100 0.89211 0.88649 0.88622 0.91767 0.91992 0.88129 0.90257 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.02 8.79 -35.23 -0.31 -4.33 16 3 C 0.10 0.93 6.23 36.01 0.22 1.15 16 4 C -0.13 -1.47 5.86 -100.99 -0.59 -2.06 16 5 C -0.15 -1.80 9.31 -35.78 -0.33 -2.13 16 6 C 0.14 1.81 6.54 -5.10 -0.03 1.78 16 7 N -0.64 -10.51 2.96 -179.55 -0.53 -11.04 16 8 C 0.67 14.51 8.30 -86.92 -0.72 13.79 16 9 O -0.46 -12.01 11.59 5.30 0.06 -11.95 16 10 N -0.67 -14.12 5.29 -15.79 -0.08 -14.21 16 11 C 0.39 9.78 7.43 -154.99 -1.15 8.63 16 12 C -0.36 -8.29 9.95 -38.89 -0.39 -8.67 16 13 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 14 C -0.31 -7.91 9.83 -38.66 -0.38 -8.29 16 15 C 0.27 7.79 6.55 -85.00 -0.56 7.23 16 16 C -0.43 -11.93 9.14 -37.73 -0.34 -12.28 16 17 H 0.08 2.16 7.85 -52.48 -0.41 1.75 16 18 C 0.06 1.51 5.50 -17.34 -0.10 1.41 16 19 N -0.65 -18.30 8.98 55.55 0.50 -17.80 16 20 Si 0.89 19.56 29.56 -169.99 -5.02 14.54 16 21 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 24 N -0.47 -13.61 5.74 -10.26 -0.06 -13.67 16 25 C 0.14 1.96 6.54 -3.27 -0.02 1.94 16 26 C -0.10 -1.13 5.98 -27.92 -0.17 -1.29 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.13 1.46 6.42 -52.49 -0.34 1.12 16 33 H 0.08 0.97 5.90 -51.93 -0.31 0.66 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.39 6.61 6.31 -40.82 -0.26 6.35 16 36 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 39 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.10 1.65 7.07 -51.93 -0.37 1.28 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 351.84 15.07 5.30 5.30 Total: -1.00 -34.15 351.84 -9.88 -44.03 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.89 Total: 7.82 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -3.85 Total: 1.31 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.17 Total: -56.72 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.25 Total: -16.28 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.15 -9.88 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.910 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds