Wall clock time and date at job start Tue Mar 31 2020 11:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00095 * 2 1 4 4 C 1.50707 * 109.47046 * 180.02562 * 3 2 1 5 5 C 1.29456 * 117.69388 * 359.97438 * 4 3 2 6 6 C 1.50322 * 123.65057 * 180.88536 * 5 4 3 7 7 N 1.47007 * 109.16496 * 349.02111 * 6 5 4 8 8 C 1.34772 * 121.37660 * 222.94969 * 7 6 5 9 9 O 1.21576 * 120.00545 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00090 * 0.02562 * 8 7 6 11 11 C 1.39248 * 120.00616 * 185.12213 * 10 8 7 12 12 C 1.39677 * 119.57807 * 174.58813 * 11 10 8 13 13 C 1.38646 * 119.49345 * 179.97438 * 12 11 10 14 14 C 1.38352 * 118.67153 * 0.27947 * 13 12 11 15 15 C 1.40572 * 119.13103 * 359.43647 * 14 13 12 16 16 C 1.41334 * 119.78974 * 180.31648 * 15 14 13 17 17 H 1.08003 * 119.99504 * 0.25031 * 16 15 14 18 18 C 1.40027 * 120.00214 * 180.25447 * 16 15 14 19 19 N 1.30746 * 119.99640 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00095 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47175 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46929 * 119.99855 * 20 18 16 23 23 H 1.48496 * 109.47483 * 239.99811 * 20 18 16 24 24 N 1.31912 * 119.57125 * 354.56894 * 11 10 8 25 25 C 1.47340 * 117.25120 * 43.22009 * 7 6 5 26 26 C 1.49964 * 117.69306 * 180.02562 * 4 3 2 27 27 H 1.09000 * 109.47015 * 60.00187 * 1 2 3 28 28 H 1.08995 * 109.47340 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46762 * 300.00231 * 1 2 3 30 30 H 1.08994 * 109.47322 * 60.00219 * 3 2 1 31 31 H 1.08990 * 109.47054 * 300.00059 * 3 2 1 32 32 H 1.07995 * 118.17315 * 0.85877 * 5 4 3 33 33 H 1.09002 * 109.51790 * 229.11660 * 6 5 4 34 34 H 1.09002 * 109.52550 * 108.92850 * 6 5 4 35 35 H 0.97001 * 119.99661 * 5.11613 * 10 8 7 36 36 H 1.07995 * 120.25444 * 359.97438 * 12 11 10 37 37 H 1.08005 * 120.66834 * 180.02562 * 13 12 11 38 38 H 1.08003 * 120.43368 * 179.70148 * 14 13 12 39 39 H 0.96998 * 119.99367 * 180.02562 * 19 18 16 40 40 H 1.09006 * 109.77728 * 57.53849 * 25 7 6 41 41 H 1.09000 * 109.77979 * 178.34352 * 25 7 6 42 42 H 1.09002 * 109.31107 * 281.26312 * 26 4 3 43 43 H 1.09001 * 109.31771 * 40.68803 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.0218 -0.0038 -0.0005 6 6 5.4998 -0.2774 0.0182 7 7 6.2260 0.9766 -0.2290 8 6 7.2881 1.0209 -1.0574 9 8 7.8701 2.0718 -1.2442 10 7 7.7045 -0.0998 -1.6797 11 6 8.8638 -0.0783 -2.4508 12 6 9.3497 -1.2678 -2.9985 13 6 10.5038 -1.2444 -3.7664 14 6 11.1460 -0.0347 -3.9628 15 6 10.6038 1.1288 -3.3899 16 6 11.2447 2.3729 -3.5871 17 1 12.1459 2.4281 -4.1798 18 6 10.7114 3.5339 -3.0141 19 7 9.6207 3.4670 -2.2962 20 14 11.5589 5.1781 -3.2742 21 1 12.7657 4.9850 -4.1179 22 1 10.6262 6.1140 -3.9522 23 1 11.9582 5.7427 -1.9601 24 7 9.4887 1.0653 -2.6550 25 6 5.7485 2.1820 0.4711 26 6 4.3122 2.4551 -0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8463 -0.8899 32 1 3.3472 -0.8470 -0.0143 33 1 5.7462 -1.0004 -0.7594 34 1 5.7840 -0.6771 0.9917 35 1 7.1966 -0.9214 -1.5904 36 1 8.8304 -2.1987 -2.8251 37 1 10.8960 -2.1528 -4.1993 38 1 12.0497 0.0156 -4.5520 39 1 9.2511 4.2713 -1.8996 40 1 5.7597 2.0119 1.5477 41 1 6.3879 3.0295 0.2242 42 1 4.3341 2.8678 -1.0088 43 1 3.8449 3.1756 0.6711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881147212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:10 Heat of formation + Delta-G solvation = -0.958285 kcal Electronic energy + Delta-G solvation = -26489.035692 eV Core-core repulsion = 22728.534075 eV Total energy + Delta-G solvation = -3760.501618 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.44516 -40.02996 -39.18678 -37.80998 -35.94504 -34.92530 -34.19280 -32.19831 -32.04901 -30.77117 -28.96577 -27.47583 -26.83957 -25.01201 -24.68721 -23.42456 -22.89809 -21.03210 -19.97829 -18.96732 -18.26047 -17.89354 -17.28681 -16.84349 -16.59742 -16.38374 -16.27591 -16.23764 -15.89666 -15.59627 -15.19383 -14.71421 -14.60360 -14.43408 -14.01503 -13.91815 -13.71631 -13.57809 -13.31817 -12.90887 -12.72285 -12.68447 -12.57422 -12.50386 -12.29009 -11.99918 -11.72167 -11.65711 -11.50672 -10.86375 -10.82219 -10.76451 -9.87960 -9.75196 -9.45431 -9.09329 -8.76304 -8.00131 -6.39099 0.97662 1.23480 1.29727 1.40587 1.53184 1.55517 1.71884 2.28390 2.54288 2.77220 3.04721 3.05207 3.71205 3.98070 4.09028 4.17367 4.21495 4.33125 4.34781 4.38934 4.47836 4.54579 4.59450 4.63845 4.65535 4.76062 4.82649 4.85237 4.89696 4.96469 4.98322 5.07585 5.11634 5.29669 5.50816 5.67448 5.72351 5.84468 5.87932 5.94792 6.06597 6.28103 6.30591 6.42357 6.84179 7.07156 7.14885 7.98033 8.39644 8.60766 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.003491 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.742633 B = 8019.534451 C = 9334.898077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.097 3.903 4 C -0.131 4.131 5 C -0.156 4.156 6 C 0.140 3.860 7 N -0.636 5.636 8 C 0.664 3.336 9 O -0.512 6.512 10 N -0.663 5.663 11 C 0.364 3.636 12 C -0.347 4.347 13 C -0.033 4.033 14 C -0.330 4.330 15 C 0.235 3.765 16 C -0.465 4.465 17 H 0.086 0.914 18 C 0.008 3.992 19 N -0.684 5.684 20 Si 0.976 3.024 21 H -0.254 1.254 22 H -0.271 1.271 23 H -0.271 1.271 24 N -0.507 5.507 25 C 0.133 3.867 26 C -0.087 4.087 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.137 0.863 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.413 0.587 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.105 0.895 39 H 0.269 0.731 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.882 -4.929 7.996 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C 0.021 3.979 4 C -0.131 4.131 5 C -0.174 4.174 6 C 0.018 3.982 7 N -0.378 5.378 8 C 0.364 3.636 9 O -0.380 6.380 10 N -0.315 5.315 11 C 0.124 3.876 12 C -0.373 4.373 13 C -0.057 4.057 14 C -0.353 4.353 15 C 0.110 3.890 16 C -0.496 4.496 17 H 0.104 0.896 18 C -0.218 4.218 19 N -0.303 5.303 20 Si 0.797 3.203 21 H -0.178 1.178 22 H -0.196 1.196 23 H -0.196 1.196 24 N -0.226 5.226 25 C 0.010 3.990 26 C -0.125 4.125 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.252 0.748 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.123 0.877 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.838 -3.376 8.383 19.997 hybrid contribution 0.254 -0.316 -0.565 0.696 sum -17.585 -3.692 7.818 19.595 Atomic orbital electron populations 1.22909 0.79349 1.03845 1.00837 1.87788 1.21404 1.28129 1.95663 1.21378 0.90362 0.84718 1.01398 1.20727 0.94538 0.95267 1.02592 1.22274 0.95423 0.98684 1.01027 1.20620 0.89569 0.85649 1.02390 1.47566 1.30975 1.11331 1.47939 1.16557 0.81664 0.84956 0.80409 1.91356 1.55140 1.28270 1.63261 1.42591 1.25698 1.12805 1.50375 1.18864 0.87113 0.91305 0.90269 1.20902 1.04713 0.96560 1.15076 1.21022 0.93318 0.96966 0.94410 1.21805 1.05472 0.94470 1.13552 1.18915 0.88373 0.93655 0.88064 1.19914 1.09521 0.91629 1.28514 0.89638 1.27073 0.95911 1.04130 0.94649 1.70579 1.13813 1.29294 1.16644 0.85264 0.79140 0.77142 0.78780 1.17769 1.19612 1.19628 1.68659 1.10408 1.23235 1.20305 1.21575 0.94098 0.87285 0.96064 1.20660 0.93853 0.95689 1.02294 0.93516 0.88542 0.92857 0.90517 0.92062 0.84571 0.89325 0.89058 0.74802 0.85177 0.84386 0.87701 0.92062 0.89689 0.91118 0.92130 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.49 8.79 -148.98 -1.31 -8.80 16 3 C 0.10 1.66 6.23 71.24 0.44 2.10 16 4 C -0.13 -2.79 5.86 -15.14 -0.09 -2.88 16 5 C -0.16 -3.39 9.31 27.10 0.25 -3.14 16 6 C 0.14 3.30 6.54 85.42 0.56 3.86 16 7 N -0.64 -20.69 2.96 -840.24 -2.49 -23.18 16 8 C 0.66 29.30 8.30 179.06 1.49 30.79 16 9 O -0.51 -28.14 11.59 -3.95 -0.05 -28.18 16 10 N -0.66 -27.74 5.29 -322.13 -1.71 -29.44 16 11 C 0.36 18.50 7.43 133.26 0.99 19.49 16 12 C -0.35 -15.38 9.95 22.72 0.23 -15.16 16 13 C -0.03 -1.48 10.15 22.39 0.23 -1.25 16 14 C -0.33 -17.14 9.83 22.87 0.22 -16.91 16 15 C 0.24 14.04 6.55 40.19 0.26 14.30 16 16 C -0.46 -27.21 9.14 23.47 0.21 -26.99 16 17 H 0.09 4.69 7.85 -2.91 -0.02 4.67 16 18 C 0.01 0.44 5.50 85.29 0.47 0.91 16 19 N -0.68 -40.64 8.98 21.84 0.20 -40.44 16 20 Si 0.98 41.76 29.56 68.60 2.03 43.79 16 21 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 N -0.51 -30.29 5.74 -186.37 -1.07 -31.36 16 25 C 0.13 3.77 6.54 86.42 0.56 4.33 16 26 C -0.09 -1.96 5.98 29.82 0.18 -1.79 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.14 2.80 6.42 -2.91 -0.02 2.78 16 33 H 0.09 1.93 5.90 -2.39 -0.01 1.92 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.41 13.25 6.31 -92.71 -0.59 12.67 16 36 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 37 H 0.14 4.92 8.06 -2.91 -0.02 4.90 16 38 H 0.10 5.06 8.06 -2.91 -0.02 5.04 16 39 H 0.27 15.00 8.29 -92.71 -0.77 14.23 16 40 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.07 2.45 7.07 -2.39 -0.02 2.44 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -78.28 351.84 3.31 -74.96 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.45 Total: 33.42 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 7.26 Total: 9.23 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -5.07 Total: -124.42 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -1.35 Total: -36.98 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -78.28 3.31 -74.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.006 kcal (2) G-P(sol) polarization free energy of solvation -78.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds