Wall clock time and date at job start Tue Mar 31 2020 11:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.47196 * 119.78441 * 2 1 4 4 C 1.53579 * 108.35938 * 108.09991 * 3 2 1 5 5 C 1.51779 * 110.81212 * 86.60346 * 4 3 2 6 6 C 1.51796 * 113.80756 * 292.91009 * 5 4 3 7 7 C 1.53063 * 110.74625 * 66.80573 * 6 5 4 8 8 H 1.09007 * 109.62959 * 34.78416 * 7 6 5 9 9 C 1.50701 * 109.63392 * 155.38089 * 7 6 5 10 10 O 1.21274 * 120.00043 * 359.00239 * 9 7 6 11 11 N 1.34776 * 120.00040 * 179.00623 * 9 7 6 12 12 C 1.39269 * 120.00077 * 174.40853 * 11 9 7 13 13 C 1.39674 * 119.57038 * 341.11121 * 12 11 9 14 14 C 1.38663 * 119.49072 * 180.02562 * 13 12 11 15 15 C 1.38344 * 118.67168 * 359.97438 * 14 13 12 16 16 C 1.40578 * 119.12894 * 359.97438 * 15 14 13 17 17 C 1.41334 * 119.79098 * 180.02562 * 16 15 14 18 18 H 1.08009 * 119.99892 * 6.45661 * 17 16 15 19 19 C 1.40027 * 120.00505 * 186.46070 * 17 16 15 20 20 N 1.30743 * 119.99806 * 353.72657 * 19 17 16 21 21 Si 1.86799 * 120.00129 * 173.72311 * 19 17 16 22 22 H 1.48505 * 109.46960 * 94.98287 * 21 19 17 23 23 H 1.48489 * 109.47406 * 214.98549 * 21 19 17 24 24 H 1.48502 * 109.47152 * 334.99044 * 21 19 17 25 25 N 1.31899 * 119.57557 * 160.83646 * 12 11 9 26 26 C 1.33377 * 119.78744 * 180.28454 * 2 1 3 27 27 O 1.21277 * 119.88678 * 0.27145 * 26 2 1 28 28 H 1.09002 * 109.46766 * 179.72838 * 1 2 3 29 29 H 1.09001 * 109.46867 * 299.71784 * 1 2 3 30 30 H 1.08991 * 109.47218 * 59.72159 * 1 2 3 31 31 H 1.08994 * 109.60462 * 227.79867 * 3 2 1 32 32 H 1.08998 * 109.60637 * 348.29430 * 3 2 1 33 33 H 1.08990 * 109.30186 * 326.21593 * 4 3 2 34 34 H 1.09008 * 109.12041 * 206.87049 * 4 3 2 35 35 H 1.08998 * 108.61952 * 171.79057 * 5 4 3 36 36 H 1.09001 * 108.50722 * 53.94296 * 5 4 3 37 37 H 1.09000 * 109.22228 * 306.47877 * 6 5 4 38 38 H 1.09002 * 109.18867 * 187.11334 * 6 5 4 39 39 H 0.97002 * 119.99926 * 354.39961 * 11 9 7 40 40 H 1.07993 * 120.25720 * 359.97419 * 13 12 11 41 41 H 1.08000 * 120.66283 * 180.02562 * 14 13 12 42 42 H 1.08001 * 120.43668 * 179.97438 * 15 14 13 43 43 H 0.97002 * 119.99960 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1962 1.2775 0.0000 4 6 2.8295 1.4724 1.3855 5 6 4.1878 0.7988 1.4572 6 6 4.1254 -0.7159 1.3799 7 6 3.6417 -1.1689 0.0002 8 1 4.0161 -0.4852 -0.7618 9 6 4.1387 -2.5643 -0.2776 10 8 4.8296 -3.1357 0.5390 11 7 3.8153 -3.1771 -1.4336 12 6 4.3680 -4.4176 -1.7424 13 6 5.5244 -4.8404 -1.0830 14 6 6.0736 -6.0756 -1.3922 15 6 5.4534 -6.8564 -2.3512 16 6 4.2911 -6.3752 -2.9785 17 6 3.6459 -7.1616 -3.9598 18 1 3.9831 -8.1696 -4.1515 19 6 2.5695 -6.6339 -4.6835 20 7 2.0823 -5.4621 -4.3693 21 14 1.8299 -7.6042 -6.0980 22 1 0.6617 -8.3797 -5.6089 23 1 1.3914 -6.6685 -7.1644 24 1 2.8485 -8.5360 -6.6452 25 7 3.7895 -5.1803 -2.6498 26 6 2.1276 -1.1575 -0.0057 27 8 1.5153 -2.2043 -0.0159 28 1 -0.3633 -1.0277 -0.0049 29 1 -0.3633 0.5095 0.8925 30 1 -0.3633 0.5181 -0.8874 31 1 2.9765 1.2523 -0.7606 32 1 1.5053 2.0944 -0.2083 33 1 2.1758 1.0424 2.1442 34 1 2.9479 2.5390 1.5772 35 1 4.6666 1.0799 2.3951 36 1 4.7992 1.1643 0.6321 37 1 3.4380 -1.0860 2.1405 38 1 5.1187 -1.1252 1.5643 39 1 3.1975 -2.7543 -2.0504 40 1 5.9878 -4.2099 -0.3388 41 1 6.9670 -6.4214 -0.8937 42 1 5.8570 -7.8230 -2.6144 43 1 1.3365 -5.0967 -4.8704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:34 Heat of formation + Delta-G solvation = -24.063430 kcal Electronic energy + Delta-G solvation = -26926.055347 eV Core-core repulsion = 23164.551815 eV Total energy + Delta-G solvation = -3761.503532 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.98575 -39.31011 -37.63153 -36.87247 -34.72708 -34.18244 -33.19253 -31.48918 -30.34623 -29.26176 -28.48112 -26.18430 -25.31525 -24.20667 -22.14636 -21.52036 -20.77422 -20.15181 -18.85310 -17.67402 -17.47330 -17.25300 -16.26164 -15.88123 -15.51534 -14.90364 -14.73676 -14.46371 -14.39780 -14.02562 -13.87451 -13.69129 -13.37257 -13.13283 -12.94899 -12.76325 -12.38313 -12.19872 -12.13666 -11.91471 -11.76134 -11.26842 -11.22126 -11.04139 -11.02362 -10.90546 -10.80356 -10.61344 -10.07414 -9.78803 -9.71856 -9.16491 -8.93879 -8.86636 -7.97513 -7.61037 -7.03492 -6.35323 -4.44510 2.42179 2.57014 2.79990 2.97532 3.12444 3.15918 3.28303 3.42026 3.59310 3.99917 4.29397 4.40866 4.45638 4.64735 4.79241 4.84143 5.01723 5.09965 5.11249 5.20533 5.26132 5.33769 5.42801 5.61835 5.70668 5.75965 5.78468 5.97040 6.00796 6.12698 6.22215 6.26258 6.50722 6.82506 6.85920 6.89646 7.15623 7.19895 7.54090 7.57056 7.90595 7.94847 8.08677 8.19359 8.34406 8.69832 8.77801 9.02927 10.12104 10.37704 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.003836 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.628216 B = 7298.311237 C = 8719.909664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.613 5.613 3 C 0.108 3.892 4 C -0.141 4.141 5 C -0.122 4.122 6 C -0.099 4.099 7 C -0.126 4.126 8 H 0.119 0.881 9 C 0.536 3.464 10 O -0.515 6.515 11 N -0.632 5.632 12 C 0.359 3.641 13 C -0.313 4.313 14 C -0.050 4.050 15 C -0.289 4.289 16 C 0.279 3.721 17 C -0.436 4.436 18 H 0.085 0.915 19 C 0.071 3.929 20 N -0.720 5.720 21 Si 0.906 3.094 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.261 1.261 25 N -0.504 5.504 26 C 0.520 3.480 27 O -0.518 6.518 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.406 0.594 40 H 0.130 0.870 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 18.308 6.737 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.347 5.347 3 C -0.015 4.015 4 C -0.180 4.180 5 C -0.159 4.159 6 C -0.137 4.137 7 C -0.150 4.150 8 H 0.137 0.863 9 C 0.321 3.679 10 O -0.391 6.391 11 N -0.275 5.275 12 C 0.125 3.875 13 C -0.338 4.338 14 C -0.074 4.074 15 C -0.312 4.312 16 C 0.152 3.848 17 C -0.468 4.468 18 H 0.103 0.897 19 C -0.154 4.154 20 N -0.342 5.342 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.185 1.185 25 N -0.222 5.222 26 C 0.306 3.694 27 O -0.393 6.393 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.241 0.759 40 H 0.148 0.852 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.126 17.798 6.840 19.185 hybrid contribution -0.075 -0.328 -0.581 0.671 sum -2.200 17.470 6.259 18.687 Atomic orbital electron populations 1.21729 0.79033 1.04684 1.01056 1.47657 1.07126 1.06084 1.73856 1.21998 0.96614 0.85254 0.97642 1.21939 0.97367 1.01262 0.97406 1.21197 0.97016 0.94676 1.03035 1.21158 1.04087 0.95238 0.93204 1.21757 0.93678 0.97299 1.02282 0.86285 1.19587 0.80468 0.86596 0.81275 1.90603 1.38112 1.64976 1.45401 1.43057 1.45201 1.18795 1.20454 1.18500 0.89341 0.85708 0.93987 1.21575 1.01124 1.00757 1.10356 1.20795 0.97292 0.93911 0.95448 1.21710 1.02173 1.01907 1.05423 1.18195 0.88583 0.87563 0.90435 1.19553 1.11999 1.00060 1.15211 0.89695 1.26045 0.96245 0.94970 0.98111 1.70139 1.16881 1.14402 1.32750 0.86336 0.79782 0.80192 0.80616 1.19574 1.20193 1.18505 1.68072 1.30650 1.06436 1.17084 1.20033 0.89224 0.83722 0.76425 1.90858 1.69196 1.31003 1.48249 0.89170 0.92342 0.92082 0.90336 0.89399 0.91103 0.90498 0.91078 0.91537 0.91174 0.88586 0.75871 0.85228 0.88342 0.88253 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.59 59.85 0.63 1.37 16 2 N -0.61 -6.54 2.85 -180.75 -0.51 -7.06 16 3 C 0.11 0.72 5.95 -3.36 -0.02 0.70 16 4 C -0.14 -0.88 5.75 -27.05 -0.16 -1.04 16 5 C -0.12 -0.90 5.28 -27.96 -0.15 -1.05 16 6 C -0.10 -1.14 4.80 -27.31 -0.13 -1.27 16 7 C -0.13 -1.73 2.25 -92.54 -0.21 -1.94 16 8 H 0.12 1.26 6.76 -51.93 -0.35 0.91 16 9 C 0.54 10.52 6.41 -10.99 -0.07 10.45 16 10 O -0.52 -11.42 12.30 5.56 0.07 -11.35 16 11 N -0.63 -14.05 5.03 -11.40 -0.06 -14.11 16 12 C 0.36 9.49 7.51 -154.98 -1.16 8.33 16 13 C -0.31 -8.00 8.83 -38.89 -0.34 -8.34 16 14 C -0.05 -1.23 10.15 -39.39 -0.40 -1.63 16 15 C -0.29 -7.56 9.83 -38.66 -0.38 -7.94 16 16 C 0.28 8.01 6.54 -85.00 -0.56 7.46 16 17 C -0.44 -12.09 9.13 -37.73 -0.34 -12.43 16 18 H 0.08 2.20 7.86 -52.48 -0.41 1.78 16 19 C 0.07 1.86 5.49 -17.34 -0.10 1.76 16 20 N -0.72 -19.64 11.49 55.55 0.64 -19.01 16 21 Si 0.91 19.10 29.56 -169.99 -5.03 14.07 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 25 N -0.50 -14.55 7.92 -10.26 -0.08 -14.63 16 26 C 0.52 7.72 6.43 -11.26 -0.07 7.65 16 27 O -0.52 -10.37 15.04 5.56 0.08 -10.29 16 28 H 0.09 1.11 6.85 -51.93 -0.36 0.75 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.47 6.70 -51.93 -0.35 0.13 16 32 H 0.09 0.40 7.96 -51.93 -0.41 -0.01 16 33 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 34 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.42 7.88 -51.93 -0.41 0.01 16 37 H 0.07 0.89 7.86 -51.93 -0.41 0.49 16 38 H 0.10 1.21 7.12 -51.93 -0.37 0.84 16 39 H 0.41 8.57 8.59 -40.82 -0.35 8.21 16 40 H 0.13 3.20 5.34 -52.50 -0.28 2.92 16 41 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 42 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 43 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -35.56 348.39 -8.88 -44.44 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.79 Total: 10.59 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -3.45 Total: 2.09 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.01 Total: -54.80 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.15 Total: -21.64 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.56 -8.88 -44.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.380 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds