Wall clock time and date at job start Tue Mar 31 2020 11:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.47196 * 119.78441 * 2 1 4 4 C 1.53579 * 108.35938 * 108.09991 * 3 2 1 5 5 C 1.51779 * 110.81212 * 86.60346 * 4 3 2 6 6 C 1.51796 * 113.80756 * 292.91009 * 5 4 3 7 7 C 1.53063 * 110.74625 * 66.80573 * 6 5 4 8 8 H 1.09007 * 109.62959 * 34.78416 * 7 6 5 9 9 C 1.50701 * 109.63392 * 155.38089 * 7 6 5 10 10 O 1.21274 * 120.00043 * 359.00239 * 9 7 6 11 11 N 1.34776 * 120.00040 * 179.00623 * 9 7 6 12 12 C 1.39269 * 120.00077 * 174.40853 * 11 9 7 13 13 C 1.39674 * 119.57038 * 341.11121 * 12 11 9 14 14 C 1.38663 * 119.49072 * 180.02562 * 13 12 11 15 15 C 1.38344 * 118.67168 * 359.97438 * 14 13 12 16 16 C 1.40578 * 119.12894 * 359.97438 * 15 14 13 17 17 C 1.41334 * 119.79098 * 180.02562 * 16 15 14 18 18 H 1.08009 * 119.99892 * 6.45661 * 17 16 15 19 19 C 1.40027 * 120.00505 * 186.46070 * 17 16 15 20 20 N 1.30743 * 119.99806 * 353.72657 * 19 17 16 21 21 Si 1.86799 * 120.00129 * 173.72311 * 19 17 16 22 22 H 1.48505 * 109.46960 * 94.98287 * 21 19 17 23 23 H 1.48489 * 109.47406 * 214.98549 * 21 19 17 24 24 H 1.48502 * 109.47152 * 334.99044 * 21 19 17 25 25 N 1.31899 * 119.57557 * 160.83646 * 12 11 9 26 26 C 1.33377 * 119.78744 * 180.28454 * 2 1 3 27 27 O 1.21277 * 119.88678 * 0.27145 * 26 2 1 28 28 H 1.09002 * 109.46766 * 179.72838 * 1 2 3 29 29 H 1.09001 * 109.46867 * 299.71784 * 1 2 3 30 30 H 1.08991 * 109.47218 * 59.72159 * 1 2 3 31 31 H 1.08994 * 109.60462 * 227.79867 * 3 2 1 32 32 H 1.08998 * 109.60637 * 348.29430 * 3 2 1 33 33 H 1.08990 * 109.30186 * 326.21593 * 4 3 2 34 34 H 1.09008 * 109.12041 * 206.87049 * 4 3 2 35 35 H 1.08998 * 108.61952 * 171.79057 * 5 4 3 36 36 H 1.09001 * 108.50722 * 53.94296 * 5 4 3 37 37 H 1.09000 * 109.22228 * 306.47877 * 6 5 4 38 38 H 1.09002 * 109.18867 * 187.11334 * 6 5 4 39 39 H 0.97002 * 119.99926 * 354.39961 * 11 9 7 40 40 H 1.07993 * 120.25720 * 359.97419 * 13 12 11 41 41 H 1.08000 * 120.66283 * 180.02562 * 14 13 12 42 42 H 1.08001 * 120.43668 * 179.97438 * 15 14 13 43 43 H 0.97002 * 119.99960 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1962 1.2775 0.0000 4 6 2.8295 1.4724 1.3855 5 6 4.1878 0.7988 1.4572 6 6 4.1254 -0.7159 1.3799 7 6 3.6417 -1.1689 0.0002 8 1 4.0161 -0.4852 -0.7618 9 6 4.1387 -2.5643 -0.2776 10 8 4.8296 -3.1357 0.5390 11 7 3.8153 -3.1771 -1.4336 12 6 4.3680 -4.4176 -1.7424 13 6 5.5244 -4.8404 -1.0830 14 6 6.0736 -6.0756 -1.3922 15 6 5.4534 -6.8564 -2.3512 16 6 4.2911 -6.3752 -2.9785 17 6 3.6459 -7.1616 -3.9598 18 1 3.9831 -8.1696 -4.1515 19 6 2.5695 -6.6339 -4.6835 20 7 2.0823 -5.4621 -4.3693 21 14 1.8299 -7.6042 -6.0980 22 1 0.6617 -8.3797 -5.6089 23 1 1.3914 -6.6685 -7.1644 24 1 2.8485 -8.5360 -6.6452 25 7 3.7895 -5.1803 -2.6498 26 6 2.1276 -1.1575 -0.0057 27 8 1.5153 -2.2043 -0.0159 28 1 -0.3633 -1.0277 -0.0049 29 1 -0.3633 0.5095 0.8925 30 1 -0.3633 0.5181 -0.8874 31 1 2.9765 1.2523 -0.7606 32 1 1.5053 2.0944 -0.2083 33 1 2.1758 1.0424 2.1442 34 1 2.9479 2.5390 1.5772 35 1 4.6666 1.0799 2.3951 36 1 4.7992 1.1643 0.6321 37 1 3.4380 -1.0860 2.1405 38 1 5.1187 -1.1252 1.5643 39 1 3.1975 -2.7543 -2.0504 40 1 5.9878 -4.2099 -0.3388 41 1 6.9670 -6.4214 -0.8937 42 1 5.8570 -7.8230 -2.6144 43 1 1.3365 -5.0967 -4.8704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:33 Heat of formation + Delta-G solvation = -48.077493 kcal Electronic energy + Delta-G solvation = -26927.096675 eV Core-core repulsion = 23164.551815 eV Total energy + Delta-G solvation = -3762.544860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.23931 -40.85648 -39.47339 -37.83759 -36.10720 -35.59668 -35.11538 -32.52424 -32.36255 -31.02302 -29.38132 -27.62908 -26.86150 -25.11216 -23.72490 -23.50689 -21.83013 -21.49231 -20.13762 -19.32786 -18.78863 -18.63169 -17.90510 -17.24424 -16.63568 -16.44695 -16.36553 -16.07179 -15.63807 -15.41068 -14.98816 -14.90978 -14.64329 -14.49597 -14.23623 -14.01237 -13.83013 -13.59877 -13.29157 -13.09784 -12.95760 -12.88738 -12.66817 -12.63826 -12.53640 -11.95682 -11.86837 -11.68339 -11.61013 -11.52456 -11.06656 -10.95097 -10.68241 -10.01595 -9.75055 -9.66045 -9.02580 -8.32687 -6.53817 0.65681 1.06501 1.39938 1.42969 1.45080 1.53455 1.58262 1.98856 2.09980 2.22732 2.85084 3.28489 3.40111 3.64661 3.82306 3.89250 4.05685 4.14739 4.28075 4.32408 4.40726 4.46190 4.60167 4.63976 4.67143 4.77350 4.85111 4.90501 4.93236 4.93937 5.03211 5.05970 5.20787 5.21064 5.27224 5.44903 5.50399 5.58562 5.64442 5.89037 6.01355 6.22228 6.24037 6.42932 6.75617 6.88730 7.02173 7.10658 8.08388 8.43431 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.003836 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.628216 B = 7298.311237 C = 8719.909664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.601 5.601 3 C 0.097 3.903 4 C -0.136 4.136 5 C -0.117 4.117 6 C -0.094 4.094 7 C -0.113 4.113 8 H 0.158 0.842 9 C 0.531 3.469 10 O -0.545 6.545 11 N -0.635 5.635 12 C 0.343 3.657 13 C -0.326 4.326 14 C -0.047 4.047 15 C -0.306 4.306 16 C 0.243 3.757 17 C -0.467 4.467 18 H 0.094 0.906 19 C 0.023 3.977 20 N -0.756 5.756 21 Si 0.991 3.009 22 H -0.266 1.266 23 H -0.266 1.266 24 H -0.252 1.252 25 N -0.535 5.535 26 C 0.515 3.485 27 O -0.586 6.586 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.408 0.592 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.116 0.884 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 20.906 6.279 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.332 5.332 3 C -0.024 4.024 4 C -0.174 4.174 5 C -0.154 4.154 6 C -0.132 4.132 7 C -0.137 4.137 8 H 0.176 0.824 9 C 0.318 3.682 10 O -0.422 6.422 11 N -0.278 5.278 12 C 0.108 3.892 13 C -0.350 4.350 14 C -0.072 4.072 15 C -0.329 4.329 16 C 0.116 3.884 17 C -0.499 4.499 18 H 0.112 0.888 19 C -0.198 4.198 20 N -0.378 5.378 21 Si 0.811 3.189 22 H -0.191 1.191 23 H -0.191 1.191 24 H -0.176 1.176 25 N -0.255 5.255 26 C 0.302 3.698 27 O -0.466 6.466 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.139 0.861 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.244 0.756 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.134 0.866 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.163 20.490 6.414 21.580 hybrid contribution -0.053 -1.037 -0.333 1.090 sum -2.216 19.454 6.081 20.502 Atomic orbital electron populations 1.21862 0.78308 1.03135 1.03544 1.47810 1.07823 1.06339 1.71275 1.22457 0.97597 0.83795 0.98548 1.21923 0.96032 1.02995 0.96480 1.21200 0.98495 0.90989 1.04740 1.21181 1.02430 0.98610 0.90967 1.21786 0.93343 0.93757 1.04802 0.82442 1.20662 0.79341 0.88455 0.79754 1.90558 1.39414 1.66376 1.45873 1.43192 1.45343 1.17743 1.21525 1.18956 0.89759 0.86899 0.93557 1.21826 1.01161 1.01511 1.10540 1.21195 0.98045 0.93230 0.94708 1.21917 1.02008 1.02949 1.06033 1.18756 0.89912 0.88233 0.91454 1.19975 1.13227 1.00675 1.16009 0.88804 1.27052 0.96065 0.95967 1.00723 1.70245 1.17393 1.16101 1.34092 0.85068 0.78738 0.78538 0.76545 1.19055 1.19052 1.17557 1.68096 1.31746 1.07180 1.18453 1.20181 0.89425 0.84110 0.76122 1.90836 1.70305 1.33575 1.51884 0.92772 0.89666 0.89618 0.88954 0.86128 0.92497 0.87116 0.89684 0.89451 0.93209 0.89948 0.75623 0.84555 0.84713 0.86566 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 10.59 127.77 1.35 2.65 16 2 N -0.60 -11.77 2.85 -844.94 -2.41 -14.18 16 3 C 0.10 0.89 5.95 86.44 0.51 1.41 16 4 C -0.14 -1.14 5.75 30.39 0.17 -0.96 16 5 C -0.12 -1.33 5.28 29.80 0.16 -1.17 16 6 C -0.09 -2.07 4.80 30.22 0.15 -1.93 16 7 C -0.11 -3.05 2.25 -12.04 -0.03 -3.08 16 8 H 0.16 2.96 6.76 -2.38 -0.02 2.95 16 9 C 0.53 21.46 6.41 87.66 0.56 22.02 16 10 O -0.54 -25.00 12.30 -3.01 -0.04 -25.04 16 11 N -0.64 -29.47 5.03 -308.37 -1.55 -31.02 16 12 C 0.34 18.92 7.51 133.25 1.00 19.92 16 13 C -0.33 -17.07 8.83 22.72 0.20 -16.87 16 14 C -0.05 -2.36 10.15 22.40 0.23 -2.13 16 15 C -0.31 -16.36 9.83 22.87 0.22 -16.14 16 16 C 0.24 14.48 6.54 40.19 0.26 14.74 16 17 C -0.47 -26.59 9.13 23.47 0.21 -26.38 16 18 H 0.09 4.94 7.86 -2.91 -0.02 4.92 16 19 C 0.02 1.24 5.49 85.29 0.47 1.71 16 20 N -0.76 -42.47 11.49 21.84 0.25 -42.22 16 21 Si 0.99 39.40 29.56 68.60 2.03 41.43 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 24 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 25 N -0.54 -32.30 7.92 -186.36 -1.48 -33.78 16 26 C 0.51 15.38 6.43 88.10 0.57 15.95 16 27 O -0.59 -24.80 15.04 -3.02 -0.05 -24.85 16 28 H 0.05 1.38 6.85 -2.39 -0.02 1.37 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.09 0.67 6.70 -2.39 -0.02 0.65 16 32 H 0.12 0.43 7.96 -2.39 -0.02 0.41 16 33 H 0.06 0.68 8.05 -2.39 -0.02 0.66 16 34 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 0.69 7.88 -2.39 -0.02 0.68 16 37 H 0.05 1.29 7.86 -2.39 -0.02 1.27 16 38 H 0.08 2.07 7.12 -2.39 -0.02 2.05 16 39 H 0.41 18.13 8.59 -92.71 -0.80 17.34 16 40 H 0.14 6.90 5.34 -3.14 -0.02 6.88 16 41 H 0.14 5.55 8.06 -2.91 -0.02 5.53 16 42 H 0.12 5.61 8.06 -2.91 -0.02 5.59 16 43 H 0.28 14.07 8.29 -92.71 -0.77 13.30 16 Total: -1.00 -83.93 348.39 3.06 -80.87 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: 0.25 Total: 39.04 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 6.05 Total: 9.75 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -5.18 Total: -121.20 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.08 Total: -49.88 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -83.93 3.06 -80.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.788 kcal (2) G-P(sol) polarization free energy of solvation -83.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds