Wall clock time and date at job start Tue Mar 31 2020 11:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34231 * 116.99806 * 2 1 4 4 O 1.20820 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99844 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47192 * 299.99639 * 5 3 2 7 7 C 1.53001 * 109.47288 * 59.99700 * 5 3 2 8 8 C 1.53002 * 109.47188 * 184.99708 * 7 5 3 9 9 H 1.08994 * 110.33155 * 307.25358 * 8 7 5 10 10 C 1.54478 * 110.37299 * 185.00065 * 8 7 5 11 11 C 1.54505 * 104.06683 * 217.19443 * 10 8 7 12 12 C 1.54489 * 104.05978 * 359.97438 * 11 10 8 13 13 O 1.44423 * 110.36856 * 69.62127 * 8 7 5 14 14 N 1.46901 * 109.47194 * 179.97438 * 5 3 2 15 15 C 1.46905 * 110.99870 * 84.99897 * 14 5 3 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 5 17 17 C 1.53004 * 109.47360 * 180.02562 * 16 15 14 18 18 S 1.80994 * 109.47261 * 179.97438 * 17 16 15 19 19 C 1.76203 * 99.99877 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00016 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00082 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99855 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00052 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47221 * 59.99794 * 23 21 19 25 25 H 1.48500 * 109.47254 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47310 * 300.00015 * 23 21 19 27 27 H 1.09001 * 109.46919 * 60.00497 * 1 2 3 28 28 H 1.08994 * 109.46576 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46946 * 300.00275 * 1 2 3 30 30 H 1.08994 * 109.47082 * 305.00057 * 7 5 3 31 31 H 1.08999 * 109.46730 * 64.99992 * 7 5 3 32 32 H 1.09004 * 110.51212 * 335.83718 * 10 8 7 33 33 H 1.09005 * 110.50937 * 98.40737 * 10 8 7 34 34 H 1.08996 * 110.51507 * 118.63976 * 11 10 8 35 35 H 1.09002 * 110.51170 * 241.22563 * 11 10 8 36 36 H 1.09004 * 110.36773 * 142.81198 * 12 11 10 37 37 H 1.08997 * 110.37049 * 265.14765 * 12 11 10 38 38 H 1.00901 * 111.00067 * 208.95072 * 14 5 3 39 39 H 1.09001 * 109.46798 * 300.00327 * 15 14 5 40 40 H 1.08998 * 109.46961 * 60.00043 * 15 14 5 41 41 H 1.09001 * 109.47393 * 299.99719 * 16 15 14 42 42 H 1.08998 * 109.47408 * 60.00073 * 16 15 14 43 43 H 1.09001 * 109.46514 * 300.00105 * 17 16 15 44 44 H 1.08998 * 109.46924 * 59.99625 * 17 16 15 45 45 H 0.97005 * 120.00003 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7810 0.8908 7 6 4.1139 0.5810 -1.2483 8 6 5.6424 0.5513 -1.1864 9 1 6.0339 1.5533 -1.0115 10 6 6.2223 -0.0321 -2.4939 11 6 7.4384 -0.8631 -2.0275 12 6 7.4498 -0.6830 -0.4931 13 8 6.0860 -0.3521 -0.1506 14 7 3.9828 2.6836 -0.0002 15 6 4.0169 3.2232 1.3658 16 6 4.4533 4.6890 1.3243 17 6 4.4894 5.2509 2.7470 18 16 5.0065 6.9847 2.6979 19 6 4.9627 7.3658 4.4177 20 1 4.6735 6.6086 5.1314 21 6 5.2990 8.6394 4.8551 22 7 5.6510 9.5625 3.9853 23 14 5.2519 9.0436 6.6782 24 1 6.1919 8.1542 7.4069 25 1 5.6508 10.4594 6.8819 26 1 3.8751 8.8385 7.1954 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.7322 -0.4389 -1.2941 31 1 3.7968 1.1279 -2.1362 32 1 5.4888 -0.6714 -2.9853 33 1 6.5381 0.7689 -3.1624 34 1 7.3061 -1.9132 -2.2881 35 1 8.3575 -0.4745 -2.4661 36 1 7.7491 -1.6103 -0.0045 37 1 8.1202 0.1289 -0.2114 38 1 4.8760 2.7964 -0.4558 39 1 3.0236 3.1526 1.8091 40 1 4.7240 2.6500 1.9653 41 1 5.4465 4.7600 0.8808 42 1 3.7459 5.2620 0.7249 43 1 3.4964 5.1799 3.1909 44 1 5.1971 4.6779 3.3461 45 1 5.8856 10.4527 4.2909 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886950976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:19 Heat of formation + Delta-G solvation = -145.706103 kcal Electronic energy + Delta-G solvation = -24307.961225 eV Core-core repulsion = 20644.334071 eV Total energy + Delta-G solvation = -3663.627154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71295 -39.76855 -37.33713 -36.10826 -33.92965 -32.46720 -32.38590 -30.94917 -28.95021 -27.35261 -25.65002 -24.78671 -24.20286 -22.22437 -21.31388 -21.10907 -20.45696 -17.77869 -17.41928 -17.05503 -16.85176 -16.29763 -15.97588 -15.83923 -15.56049 -14.94593 -14.76174 -14.56225 -14.10384 -13.89611 -13.81003 -13.31679 -12.93174 -12.86311 -12.53079 -12.51414 -12.30249 -12.11548 -11.85270 -11.73195 -11.42161 -11.34123 -11.24622 -11.02730 -11.01490 -10.89475 -10.76714 -10.60166 -10.40699 -10.32031 -10.11512 -9.49489 -9.01066 -8.57437 -8.25427 -6.47558 -6.18498 -3.88225 2.17195 2.49392 3.24672 3.26317 3.30554 3.46817 3.59406 4.04836 4.15038 4.21540 4.27223 4.50216 4.58414 4.61706 4.74947 4.87950 4.93348 4.95851 5.01693 5.16272 5.16642 5.17243 5.31349 5.33638 5.35082 5.41517 5.44349 5.49634 5.52017 5.59844 5.62669 5.72977 5.77569 5.96252 6.14506 6.26558 6.37455 6.46309 6.66461 6.71156 6.91165 7.22190 7.64477 7.76782 8.40786 9.27568 10.89690 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012890 B = 0.002638 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.679024 B =10612.868480 C =12104.022192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.458 3.542 4 O -0.478 6.478 5 C 0.102 3.898 6 H 0.091 0.909 7 C -0.111 4.111 8 C 0.070 3.930 9 H 0.074 0.926 10 C -0.149 4.149 11 C -0.156 4.156 12 C 0.043 3.957 13 O -0.369 6.369 14 N -0.669 5.669 15 C 0.063 3.937 16 C -0.093 4.093 17 C -0.112 4.112 18 S -0.131 6.131 19 C -0.516 4.516 20 H 0.071 0.929 21 C 0.071 3.929 22 N -0.870 5.870 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.351 0.649 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 -25.110 -13.831 28.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.282 6.282 3 C 0.298 3.702 4 O -0.362 6.362 5 C -0.010 4.010 6 H 0.108 0.892 7 C -0.149 4.149 8 C 0.012 3.988 9 H 0.092 0.908 10 C -0.187 4.187 11 C -0.193 4.193 12 C -0.033 4.033 13 O -0.289 6.289 14 N -0.305 5.305 15 C -0.067 4.067 16 C -0.132 4.132 17 C -0.261 4.261 18 S 0.097 5.903 19 C -0.664 4.664 20 H 0.090 0.910 21 C -0.138 4.138 22 N -0.506 5.506 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.173 0.827 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.629 -23.770 -14.687 27.988 hybrid contribution 0.343 -0.737 2.423 2.556 sum -1.286 -24.507 -12.263 27.434 Atomic orbital electron populations 1.23227 0.76555 1.03407 1.02597 1.86494 1.23212 1.33836 1.84629 1.23788 0.91878 0.81338 0.73186 1.90694 1.66460 1.36134 1.42868 1.20954 0.87885 0.91248 1.00916 0.89182 1.21792 0.93480 1.02432 0.97177 1.23078 0.94339 0.94032 0.87315 0.90831 1.22961 0.97814 1.00229 0.97701 1.22937 0.98846 1.01225 0.96337 1.23424 0.84414 1.01070 0.94428 1.89168 1.27412 1.64868 1.47412 1.60011 1.36032 1.14143 1.20324 1.22137 1.01164 0.95938 0.87422 1.21209 1.01858 0.93446 0.96668 1.23216 1.02878 1.02061 0.97968 1.84604 1.88336 1.04196 1.13174 1.22660 1.52892 0.99792 0.91084 0.91047 1.25010 0.94665 0.95269 0.98858 1.70017 1.42968 1.03624 1.33995 0.86229 0.78721 0.77443 0.83165 1.19963 1.20827 1.19950 0.91962 0.88282 0.91957 0.88828 0.88870 0.90320 0.90090 0.90658 0.90419 0.89022 0.91996 0.82666 0.90842 0.94879 0.91836 0.90494 0.92090 0.92322 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.03 10.37 -39.26 -0.41 -4.44 16 3 C 0.46 5.95 7.14 36.00 0.26 6.20 16 4 O -0.48 -7.85 15.67 -18.75 -0.29 -8.14 16 5 C 0.10 1.13 2.53 -68.87 -0.17 0.95 16 6 H 0.09 1.02 7.56 -51.93 -0.39 0.63 16 7 C -0.11 -0.92 4.39 -26.73 -0.12 -1.04 16 8 C 0.07 0.55 3.14 -25.95 -0.08 0.47 16 9 H 0.07 0.58 6.30 -51.93 -0.33 0.25 16 10 C -0.15 -0.89 6.63 -25.17 -0.17 -1.06 16 11 C -0.16 -0.87 7.09 -25.16 -0.18 -1.05 16 12 C 0.04 0.31 7.63 37.94 0.29 0.60 16 13 O -0.37 -3.57 11.05 -35.23 -0.39 -3.96 16 14 N -0.67 -8.44 5.84 -107.95 -0.63 -9.07 16 15 C 0.06 0.93 5.38 -3.82 -0.02 0.91 16 16 C -0.09 -1.61 5.48 -26.73 -0.15 -1.76 16 17 C -0.11 -2.37 5.67 37.16 0.21 -2.16 16 18 S -0.13 -3.54 21.44 -107.50 -2.30 -5.85 16 19 C -0.52 -15.19 9.50 30.94 0.29 -14.89 16 20 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 23 Si 0.92 21.97 29.55 -169.99 -5.02 16.95 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.09 0.74 7.99 -51.93 -0.42 0.33 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.43 7.87 -51.93 -0.41 0.02 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.35 3.79 6.42 -39.29 -0.25 3.53 16 39 H 0.07 1.19 7.62 -51.93 -0.40 0.79 16 40 H 0.03 0.46 8.06 -51.93 -0.42 0.04 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 44 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -34.76 382.86 -9.06 -43.82 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.65 Total: 0.17 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 1.14 Total: -9.49 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.10 Total: -34.83 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -1.09 Total: -16.53 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.76 -9.06 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886950976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.890 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds