Wall clock time and date at job start Tue Mar 31 2020 11:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34231 * 116.99806 * 2 1 4 4 O 1.20820 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99844 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47192 * 299.99639 * 5 3 2 7 7 C 1.53001 * 109.47288 * 59.99700 * 5 3 2 8 8 C 1.53002 * 109.47188 * 184.99708 * 7 5 3 9 9 H 1.08994 * 110.33155 * 307.25358 * 8 7 5 10 10 C 1.54478 * 110.37299 * 185.00065 * 8 7 5 11 11 C 1.54505 * 104.06683 * 217.19443 * 10 8 7 12 12 C 1.54489 * 104.05978 * 359.97438 * 11 10 8 13 13 O 1.44423 * 110.36856 * 69.62127 * 8 7 5 14 14 N 1.46901 * 109.47194 * 179.97438 * 5 3 2 15 15 C 1.46905 * 110.99870 * 84.99897 * 14 5 3 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 5 17 17 C 1.53004 * 109.47360 * 180.02562 * 16 15 14 18 18 S 1.80994 * 109.47261 * 179.97438 * 17 16 15 19 19 C 1.76203 * 99.99877 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00016 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00082 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99855 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00052 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47221 * 59.99794 * 23 21 19 25 25 H 1.48500 * 109.47254 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47310 * 300.00015 * 23 21 19 27 27 H 1.09001 * 109.46919 * 60.00497 * 1 2 3 28 28 H 1.08994 * 109.46576 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46946 * 300.00275 * 1 2 3 30 30 H 1.08994 * 109.47082 * 305.00057 * 7 5 3 31 31 H 1.08999 * 109.46730 * 64.99992 * 7 5 3 32 32 H 1.09004 * 110.51212 * 335.83718 * 10 8 7 33 33 H 1.09005 * 110.50937 * 98.40737 * 10 8 7 34 34 H 1.08996 * 110.51507 * 118.63976 * 11 10 8 35 35 H 1.09002 * 110.51170 * 241.22563 * 11 10 8 36 36 H 1.09004 * 110.36773 * 142.81198 * 12 11 10 37 37 H 1.08997 * 110.37049 * 265.14765 * 12 11 10 38 38 H 1.00901 * 111.00067 * 208.95072 * 14 5 3 39 39 H 1.09001 * 109.46798 * 300.00327 * 15 14 5 40 40 H 1.08998 * 109.46961 * 60.00043 * 15 14 5 41 41 H 1.09001 * 109.47393 * 299.99719 * 16 15 14 42 42 H 1.08998 * 109.47408 * 60.00073 * 16 15 14 43 43 H 1.09001 * 109.46514 * 300.00105 * 17 16 15 44 44 H 1.08998 * 109.46924 * 59.99625 * 17 16 15 45 45 H 0.97005 * 120.00003 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7810 0.8908 7 6 4.1139 0.5810 -1.2483 8 6 5.6424 0.5513 -1.1864 9 1 6.0339 1.5533 -1.0115 10 6 6.2223 -0.0321 -2.4939 11 6 7.4384 -0.8631 -2.0275 12 6 7.4498 -0.6830 -0.4931 13 8 6.0860 -0.3521 -0.1506 14 7 3.9828 2.6836 -0.0002 15 6 4.0169 3.2232 1.3658 16 6 4.4533 4.6890 1.3243 17 6 4.4894 5.2509 2.7470 18 16 5.0065 6.9847 2.6979 19 6 4.9627 7.3658 4.4177 20 1 4.6735 6.6086 5.1314 21 6 5.2990 8.6394 4.8551 22 7 5.6510 9.5625 3.9853 23 14 5.2519 9.0436 6.6782 24 1 6.1919 8.1542 7.4069 25 1 5.6508 10.4594 6.8819 26 1 3.8751 8.8385 7.1954 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.7322 -0.4389 -1.2941 31 1 3.7968 1.1279 -2.1362 32 1 5.4888 -0.6714 -2.9853 33 1 6.5381 0.7689 -3.1624 34 1 7.3061 -1.9132 -2.2881 35 1 8.3575 -0.4745 -2.4661 36 1 7.7491 -1.6103 -0.0045 37 1 8.1202 0.1289 -0.2114 38 1 4.8760 2.7964 -0.4558 39 1 3.0236 3.1526 1.8091 40 1 4.7240 2.6500 1.9653 41 1 5.4465 4.7600 0.8808 42 1 3.7459 5.2620 0.7249 43 1 3.4964 5.1799 3.1909 44 1 5.1971 4.6779 3.3461 45 1 5.8856 10.4527 4.2909 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886950976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:18 Heat of formation + Delta-G solvation = -168.563877 kcal Electronic energy + Delta-G solvation = -24308.952412 eV Core-core repulsion = 20644.334071 eV Total energy + Delta-G solvation = -3664.618341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65270 -40.40051 -38.31023 -37.16338 -35.09804 -34.60367 -33.01843 -31.93886 -29.77909 -28.17337 -27.76209 -25.85669 -25.23308 -22.82438 -22.50955 -21.85953 -21.39977 -19.55773 -18.72454 -17.82392 -17.73302 -17.08944 -16.90373 -16.73966 -16.66229 -16.45708 -16.28140 -15.75100 -15.43050 -14.83387 -14.63524 -14.53818 -14.24565 -13.94323 -13.66863 -13.43047 -13.19646 -13.05872 -12.97453 -12.92660 -12.72892 -12.59573 -12.50952 -12.40889 -12.08392 -12.01606 -11.81450 -11.76710 -11.48838 -11.38058 -11.29061 -11.14347 -10.72614 -10.34496 -9.59728 -8.67640 -8.37984 -6.14515 1.17352 1.30077 1.40119 1.46573 1.62357 1.73987 2.27396 2.88314 2.95911 3.05491 3.32789 3.48505 3.65538 3.85384 3.95253 4.00730 4.04696 4.06509 4.18022 4.25205 4.28188 4.31831 4.32013 4.37571 4.44690 4.58999 4.64600 4.70224 4.72518 4.75435 4.82785 4.92512 5.00443 5.03203 5.15827 5.17929 5.21480 5.24744 5.35402 5.38381 5.72937 5.91697 6.17078 6.28441 6.79551 7.03757 8.71343 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012890 B = 0.002638 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.679024 B =10612.868480 C =12104.022192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.460 3.540 4 O -0.519 6.519 5 C 0.105 3.895 6 H 0.091 0.909 7 C -0.102 4.102 8 C 0.068 3.932 9 H 0.072 0.928 10 C -0.147 4.147 11 C -0.152 4.152 12 C 0.035 3.965 13 O -0.394 6.394 14 N -0.675 5.675 15 C 0.077 3.923 16 C -0.081 4.081 17 C -0.088 4.088 18 S -0.192 6.192 19 C -0.541 4.541 20 H 0.071 0.929 21 C 0.015 3.985 22 N -0.907 5.907 23 Si 0.994 3.006 24 H -0.263 1.263 25 H -0.273 1.273 26 H -0.266 1.266 27 H 0.061 0.939 28 H 0.134 0.866 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.362 0.638 39 H 0.057 0.943 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.619 -26.887 -13.815 30.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.407 6.407 5 C -0.007 4.007 6 H 0.109 0.891 7 C -0.140 4.140 8 C 0.010 3.990 9 H 0.090 0.910 10 C -0.185 4.185 11 C -0.190 4.190 12 C -0.041 4.041 13 O -0.314 6.314 14 N -0.312 5.312 15 C -0.053 4.053 16 C -0.119 4.119 17 C -0.238 4.238 18 S 0.036 5.964 19 C -0.689 4.689 20 H 0.090 0.910 21 C -0.190 4.190 22 N -0.543 5.543 23 Si 0.816 3.184 24 H -0.188 1.188 25 H -0.198 1.198 26 H -0.191 1.191 27 H 0.080 0.920 28 H 0.152 0.848 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.186 0.814 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.264 -25.579 -14.691 29.525 hybrid contribution 0.185 -0.288 2.364 2.389 sum -1.078 -25.867 -12.327 28.674 Atomic orbital electron populations 1.23514 0.75059 1.05629 1.02239 1.86491 1.24702 1.32719 1.83985 1.24172 0.92551 0.81215 0.71902 1.90679 1.67447 1.37480 1.45064 1.21011 0.86865 0.90378 1.02442 0.89137 1.21770 0.93875 1.02435 0.95875 1.23129 0.93834 0.93928 0.88087 0.91047 1.22975 0.98035 1.00661 0.96821 1.22936 0.99200 1.01689 0.95129 1.23585 0.83407 1.01405 0.95713 1.89139 1.28632 1.65235 1.48353 1.59879 1.36920 1.15432 1.18988 1.21853 1.00371 0.94187 0.88906 1.21076 1.02172 0.94861 0.93837 1.23139 1.02277 0.97766 1.00616 1.84594 1.88953 1.09624 1.13216 1.23016 1.53518 1.00502 0.91843 0.91032 1.26081 0.93737 0.94865 1.04293 1.70149 1.43548 1.04144 1.36494 0.85064 0.79181 0.77676 0.76478 1.18769 1.19776 1.19112 0.91978 0.84771 0.92743 0.88128 0.88087 0.89631 0.89075 0.89987 0.89333 0.88310 0.92095 0.81391 0.92454 0.93631 0.90821 0.91917 0.92615 0.91615 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -7.59 10.37 -51.43 -0.53 -8.12 16 3 C 0.46 11.67 7.14 71.23 0.51 12.18 16 4 O -0.52 -17.17 15.67 21.98 0.34 -16.83 16 5 C 0.10 2.21 2.53 44.17 0.11 2.32 16 6 H 0.09 1.95 7.56 -2.39 -0.02 1.93 16 7 C -0.10 -1.52 4.39 30.60 0.13 -1.39 16 8 C 0.07 0.95 3.14 31.10 0.10 1.05 16 9 H 0.07 1.01 6.30 -2.39 -0.02 1.00 16 10 C -0.15 -1.43 6.63 31.61 0.21 -1.22 16 11 C -0.15 -1.37 7.09 31.61 0.22 -1.15 16 12 C 0.04 0.45 7.63 72.49 0.55 1.00 16 13 O -0.39 -7.03 11.05 -148.98 -1.65 -8.68 16 14 N -0.68 -16.43 5.84 -495.46 -2.89 -19.33 16 15 C 0.08 2.22 5.38 86.30 0.46 2.69 16 16 C -0.08 -2.77 5.48 30.59 0.17 -2.60 16 17 C -0.09 -3.77 5.67 71.98 0.41 -3.36 16 18 S -0.19 -10.61 21.44 -56.49 -1.21 -11.82 16 19 C -0.54 -32.20 9.50 67.95 0.65 -31.55 16 20 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 21 C 0.02 0.89 5.49 84.86 0.47 1.35 16 22 N -0.91 -55.81 13.22 21.65 0.29 -55.53 16 23 Si 0.99 44.84 29.55 68.60 2.03 46.87 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 28 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 30 H 0.10 1.39 7.99 -2.39 -0.02 1.37 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 0.72 7.87 -2.39 -0.02 0.70 16 33 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.36 7.34 6.42 -89.69 -0.58 6.76 16 39 H 0.06 1.85 7.62 -2.39 -0.02 1.83 16 40 H 0.05 1.20 8.06 -2.39 -0.02 1.18 16 41 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.07 2.69 8.14 -2.40 -0.02 2.67 16 45 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -75.61 382.86 1.95 -73.65 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.39 Total: 18.81 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 5.19 Total: -19.02 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -2.61 Total: -74.85 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.84 Total: -33.64 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: -10.61 SS G_CDS: -1.21 Total: -11.82 kcal Total: -75.61 1.95 -73.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886950976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.910 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds