Wall clock time and date at job start Tue Mar 31 2020 11:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00090 * 2 1 4 4 C 1.50702 * 109.47227 * 270.00419 * 3 2 1 5 5 H 1.08005 * 119.99712 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99729 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99658 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00193 * 359.97438 * 6 4 3 9 9 H 1.48508 * 109.47085 * 90.00416 * 8 6 4 10 10 H 1.48502 * 109.46994 * 209.99774 * 8 6 4 11 11 H 1.48496 * 109.47238 * 330.00259 * 8 6 4 12 12 C 1.34777 * 120.00045 * 180.02562 * 2 1 3 13 13 O 1.21589 * 119.99893 * 180.02562 * 12 2 1 14 14 N 1.34774 * 119.99925 * 359.97438 * 12 2 1 15 15 C 1.39949 * 120.00187 * 184.48091 * 14 12 2 16 16 C 1.38887 * 120.06748 * 325.27183 * 15 14 12 17 17 C 1.38097 * 119.92707 * 180.29421 * 16 15 14 18 18 C 1.38306 * 120.06953 * 359.67922 * 17 16 15 19 19 C 1.38257 * 120.13919 * 0.02562 * 18 17 16 20 20 C 1.38138 * 120.07182 * 359.97438 * 19 18 17 21 21 C 1.50692 * 120.03739 * 180.02562 * 20 19 18 22 22 H 1.08999 * 110.28934 * 219.48158 * 21 20 19 23 23 C 1.54477 * 110.24707 * 97.50268 * 21 20 19 24 24 C 1.54783 * 101.69638 * 215.39229 * 23 21 20 25 25 C 1.51282 * 104.12031 * 25.10182 * 24 23 21 26 26 O 1.21282 * 124.94441 * 163.67940 * 25 24 23 27 27 N 1.34426 * 110.11355 * 343.40607 * 25 24 23 28 28 H 1.09001 * 109.47220 * 269.99992 * 1 2 3 29 29 H 1.09004 * 109.47059 * 29.99855 * 1 2 3 30 30 H 1.08998 * 109.47183 * 150.00008 * 1 2 3 31 31 H 1.09000 * 109.46626 * 29.99829 * 3 2 1 32 32 H 1.08998 * 109.46841 * 149.99876 * 3 2 1 33 33 H 0.96998 * 119.99716 * 179.97438 * 7 6 4 34 34 H 0.97007 * 120.00285 * 4.49124 * 14 12 2 35 35 H 1.07997 * 120.04074 * 0.02562 * 16 15 14 36 36 H 1.07999 * 119.96569 * 179.69418 * 17 16 15 37 37 H 1.07997 * 119.92714 * 179.97438 * 18 17 16 38 38 H 1.08002 * 119.96613 * 180.02562 * 19 18 17 39 39 H 1.09005 * 110.97154 * 333.70248 * 23 21 20 40 40 H 1.08994 * 110.97160 * 97.42913 * 23 21 20 41 41 H 1.09002 * 110.61723 * 266.40010 * 24 23 21 42 42 H 1.08998 * 110.43015 * 143.70867 * 24 23 21 43 43 H 0.96994 * 124.34441 * 179.80039 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.3464 3.2570 -2.9126 8 14 3.7339 3.9287 -0.2528 9 1 5.1071 3.5068 0.1237 10 1 3.7499 5.3553 -0.6647 11 1 2.8274 3.7595 0.9112 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0001 14 7 1.4650 -2.3344 -0.0005 15 6 2.1615 -3.5446 0.0936 16 6 3.4082 -3.6782 -0.5039 17 6 4.0902 -4.8757 -0.4143 18 6 3.5361 -5.9389 0.2751 19 6 2.2981 -5.8070 0.8761 20 6 1.6107 -4.6119 0.7902 21 6 0.2616 -4.4688 1.4461 22 1 -0.4091 -3.8920 0.8091 23 6 0.4070 -3.7874 2.8248 24 6 -0.6851 -4.5109 3.6491 25 6 -0.8528 -5.8426 2.9512 26 8 -1.4002 -6.8135 3.4294 27 7 -0.3121 -5.7913 1.7215 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.8233 4.0829 -3.0898 34 1 0.4971 -2.3357 -0.0659 35 1 3.8418 -2.8481 -1.0416 36 1 5.0575 -4.9819 -0.8829 37 1 4.0714 -6.8745 0.3433 38 1 1.8682 -6.6390 1.4141 39 1 1.3977 -3.9629 3.2442 40 1 0.1982 -2.7198 2.7563 41 1 -1.6185 -3.9484 3.6270 42 1 -0.3515 -4.6580 4.6764 43 1 -0.3020 -6.5332 1.0968 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889156025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:42 Heat of formation + Delta-G solvation = -18.356621 kcal Electronic energy + Delta-G solvation = -26641.285038 eV Core-core repulsion = 22880.028971 eV Total energy + Delta-G solvation = -3761.256066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13208 -40.08712 -38.60755 -36.62724 -35.23515 -34.57770 -32.55828 -31.72632 -31.32284 -29.77526 -28.30241 -26.97289 -26.03961 -23.41200 -23.04003 -21.93372 -21.01100 -20.71543 -19.56728 -18.22646 -17.64732 -17.03550 -17.02509 -16.61267 -15.92558 -15.30271 -15.15225 -14.71651 -14.60582 -14.16900 -13.95327 -13.80354 -13.60002 -13.55476 -13.36607 -12.99922 -12.92586 -12.69693 -12.48578 -12.17551 -12.10836 -11.67852 -11.51771 -11.40391 -11.14310 -11.02011 -10.58744 -10.31409 -10.17496 -10.09714 -9.65619 -9.54689 -9.39102 -8.77426 -8.64323 -8.13423 -7.73609 -6.14112 -4.13593 1.23961 1.42555 2.31457 2.94529 3.03550 3.25529 3.31295 3.33710 3.52511 3.84308 4.08173 4.13882 4.23783 4.34532 4.42821 4.66184 4.78138 4.90219 5.03352 5.16717 5.18309 5.29798 5.34690 5.39339 5.49585 5.60956 5.64005 5.66117 5.74680 5.93496 6.00713 6.26819 6.30908 6.45987 6.54402 6.56121 6.67159 6.71777 6.79580 7.12647 7.13107 7.34945 7.54572 7.95152 8.31138 8.40834 8.88135 9.01300 9.45623 10.99209 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018015 B = 0.003460 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.921612 B = 8091.341416 C = 9095.047079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.606 5.606 3 C 0.231 3.769 4 C -0.532 4.532 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.701 3.299 13 O -0.565 6.565 14 N -0.695 5.695 15 C 0.193 3.807 16 C -0.117 4.117 17 C -0.097 4.097 18 C -0.143 4.143 19 C -0.094 4.094 20 C -0.141 4.141 21 C 0.181 3.819 22 H 0.084 0.916 23 C -0.123 4.123 24 C -0.157 4.157 25 C 0.521 3.479 26 O -0.538 6.538 27 N -0.722 5.722 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.400 0.600 35 H 0.149 0.851 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 -15.589 9.447 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.341 5.341 3 C 0.110 3.890 4 C -0.571 4.571 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.403 3.597 13 O -0.441 6.441 14 N -0.345 5.345 15 C 0.096 3.904 16 C -0.137 4.137 17 C -0.115 4.115 18 C -0.162 4.162 19 C -0.113 4.113 20 C -0.145 4.145 21 C 0.075 3.925 22 H 0.102 0.898 23 C -0.161 4.161 24 C -0.197 4.197 25 C 0.308 3.692 26 O -0.415 6.415 27 N -0.378 5.378 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.238 0.762 35 H 0.167 0.833 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -6.758 -15.686 9.688 19.636 hybrid contribution -0.085 0.436 0.048 0.447 sum -6.843 -15.250 9.736 19.344 Atomic orbital electron populations 1.21635 0.81170 1.02859 1.00500 1.47141 1.05801 1.05716 1.75447 1.19631 0.92277 0.78680 0.98411 1.21336 1.37200 1.07227 0.91289 0.90776 1.24852 0.95189 0.97340 0.95592 1.69897 1.41315 1.23566 1.18686 0.86850 0.80182 0.79790 0.82828 1.19852 1.21064 1.19049 1.15840 0.85496 0.79984 0.78398 1.90898 1.11292 1.85429 1.56456 1.42951 1.09940 1.03681 1.77955 1.17252 0.93384 0.84479 0.95275 1.21522 0.94487 0.98458 0.99277 1.21132 0.99678 0.92485 0.98249 1.21042 0.95986 0.99081 1.00104 1.20651 0.94837 0.96287 0.99531 1.19560 0.97656 0.95275 1.02011 1.20318 0.91550 0.83798 0.96785 0.89779 1.22713 0.99935 1.00636 0.92770 1.22420 1.01351 0.94681 1.01247 1.20899 0.76692 0.89779 0.81875 1.90762 1.43918 1.37515 1.69305 1.46322 1.59278 1.14851 1.17339 0.93404 0.89929 0.92984 0.94951 0.94315 0.92503 0.76237 0.83340 0.85792 0.86240 0.86095 0.89318 0.88818 0.87547 0.87867 0.74975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 10.24 59.85 0.61 1.70 16 2 N -0.61 -11.38 2.86 -188.74 -0.54 -11.92 16 3 C 0.23 5.30 4.23 -5.19 -0.02 5.28 16 4 C -0.53 -14.66 9.94 -34.44 -0.34 -15.00 16 5 H 0.07 2.25 8.06 -52.48 -0.42 1.83 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 8 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 12 C 0.70 13.21 8.12 -86.92 -0.71 12.50 16 13 O -0.56 -13.00 13.34 5.29 0.07 -12.93 16 14 N -0.70 -9.54 4.90 -14.22 -0.07 -9.61 16 15 C 0.19 2.59 6.29 -83.69 -0.53 2.06 16 16 C -0.12 -1.76 8.70 -39.39 -0.34 -2.10 16 17 C -0.10 -1.18 10.04 -39.61 -0.40 -1.58 16 18 C -0.14 -1.50 10.04 -39.55 -0.40 -1.89 16 19 C -0.09 -0.95 9.24 -39.61 -0.37 -1.31 16 20 C -0.14 -1.48 5.03 -104.44 -0.53 -2.01 16 21 C 0.18 1.48 3.33 -68.17 -0.23 1.25 16 22 H 0.08 0.59 6.94 -51.93 -0.36 0.23 16 23 C -0.12 -0.94 6.68 -25.02 -0.17 -1.10 16 24 C -0.16 -1.15 6.87 -26.66 -0.18 -1.33 16 25 C 0.52 5.33 8.43 -10.86 -0.09 5.24 16 26 O -0.54 -7.72 18.03 5.56 0.10 -7.62 16 27 N -0.72 -6.00 4.75 -53.88 -0.26 -6.26 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 30 H 0.05 0.54 6.30 -51.93 -0.33 0.21 16 31 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 32 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 34 H 0.40 4.20 5.12 -40.82 -0.21 3.99 16 35 H 0.15 2.70 6.20 -52.49 -0.33 2.37 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.12 1.04 6.97 -52.49 -0.37 0.68 16 39 H 0.09 0.77 7.91 -51.93 -0.41 0.36 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.41 3.07 8.51 -40.82 -0.35 2.72 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -35.27 353.75 -8.65 -43.92 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.62 Total: 5.45 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -3.78 Total: 3.66 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.09 Total: -53.99 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.17 Total: -20.55 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.27 -8.65 -43.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889156025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.568 kcal (2) G-P(sol) polarization free energy of solvation -35.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds