Wall clock time and date at job start Tue Mar 31 2020 11:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00090 * 2 1 4 4 C 1.50702 * 109.47227 * 270.00419 * 3 2 1 5 5 H 1.08005 * 119.99712 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99729 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99658 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00193 * 359.97438 * 6 4 3 9 9 H 1.48508 * 109.47085 * 90.00416 * 8 6 4 10 10 H 1.48502 * 109.46994 * 209.99774 * 8 6 4 11 11 H 1.48496 * 109.47238 * 330.00259 * 8 6 4 12 12 C 1.34777 * 120.00045 * 180.02562 * 2 1 3 13 13 O 1.21589 * 119.99893 * 180.02562 * 12 2 1 14 14 N 1.34774 * 119.99925 * 359.97438 * 12 2 1 15 15 C 1.39949 * 120.00187 * 184.48091 * 14 12 2 16 16 C 1.38887 * 120.06748 * 325.27183 * 15 14 12 17 17 C 1.38097 * 119.92707 * 180.29421 * 16 15 14 18 18 C 1.38306 * 120.06953 * 359.67922 * 17 16 15 19 19 C 1.38257 * 120.13919 * 0.02562 * 18 17 16 20 20 C 1.38138 * 120.07182 * 359.97438 * 19 18 17 21 21 C 1.50692 * 120.03739 * 180.02562 * 20 19 18 22 22 H 1.08999 * 110.28934 * 219.48158 * 21 20 19 23 23 C 1.54477 * 110.24707 * 97.50268 * 21 20 19 24 24 C 1.54783 * 101.69638 * 215.39229 * 23 21 20 25 25 C 1.51282 * 104.12031 * 25.10182 * 24 23 21 26 26 O 1.21282 * 124.94441 * 163.67940 * 25 24 23 27 27 N 1.34426 * 110.11355 * 343.40607 * 25 24 23 28 28 H 1.09001 * 109.47220 * 269.99992 * 1 2 3 29 29 H 1.09004 * 109.47059 * 29.99855 * 1 2 3 30 30 H 1.08998 * 109.47183 * 150.00008 * 1 2 3 31 31 H 1.09000 * 109.46626 * 29.99829 * 3 2 1 32 32 H 1.08998 * 109.46841 * 149.99876 * 3 2 1 33 33 H 0.96998 * 119.99716 * 179.97438 * 7 6 4 34 34 H 0.97007 * 120.00285 * 4.49124 * 14 12 2 35 35 H 1.07997 * 120.04074 * 0.02562 * 16 15 14 36 36 H 1.07999 * 119.96569 * 179.69418 * 17 16 15 37 37 H 1.07997 * 119.92714 * 179.97438 * 18 17 16 38 38 H 1.08002 * 119.96613 * 180.02562 * 19 18 17 39 39 H 1.09005 * 110.97154 * 333.70248 * 23 21 20 40 40 H 1.08994 * 110.97160 * 97.42913 * 23 21 20 41 41 H 1.09002 * 110.61723 * 266.40010 * 24 23 21 42 42 H 1.08998 * 110.43015 * 143.70867 * 24 23 21 43 43 H 0.96994 * 124.34441 * 179.80039 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.3464 3.2570 -2.9126 8 14 3.7339 3.9287 -0.2528 9 1 5.1071 3.5068 0.1237 10 1 3.7499 5.3553 -0.6647 11 1 2.8274 3.7595 0.9112 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0001 14 7 1.4650 -2.3344 -0.0005 15 6 2.1615 -3.5446 0.0936 16 6 3.4082 -3.6782 -0.5039 17 6 4.0902 -4.8757 -0.4143 18 6 3.5361 -5.9389 0.2751 19 6 2.2981 -5.8070 0.8761 20 6 1.6107 -4.6119 0.7902 21 6 0.2616 -4.4688 1.4461 22 1 -0.4091 -3.8920 0.8091 23 6 0.4070 -3.7874 2.8248 24 6 -0.6851 -4.5109 3.6491 25 6 -0.8528 -5.8426 2.9512 26 8 -1.4002 -6.8135 3.4294 27 7 -0.3121 -5.7913 1.7215 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.8233 4.0829 -3.0898 34 1 0.4971 -2.3357 -0.0659 35 1 3.8418 -2.8481 -1.0416 36 1 5.0575 -4.9819 -0.8829 37 1 4.0714 -6.8745 0.3433 38 1 1.8682 -6.6390 1.4141 39 1 1.3977 -3.9629 3.2442 40 1 0.1982 -2.7198 2.7563 41 1 -1.6185 -3.9484 3.6270 42 1 -0.3515 -4.6580 4.6764 43 1 -0.3020 -6.5332 1.0968 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889156025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:41 Heat of formation + Delta-G solvation = -43.501347 kcal Electronic energy + Delta-G solvation = -26642.375395 eV Core-core repulsion = 22880.028971 eV Total energy + Delta-G solvation = -3762.346423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.08442 -41.16450 -39.69990 -37.48599 -36.71351 -35.87737 -34.59015 -32.44818 -32.15130 -31.07961 -29.81800 -27.77417 -27.34949 -24.93710 -23.89847 -23.18559 -21.87682 -21.44625 -20.88967 -19.40127 -19.12054 -18.51765 -18.16662 -17.45130 -16.90880 -16.66591 -16.53703 -16.03297 -15.54248 -15.39651 -15.07508 -14.97008 -14.70254 -14.51451 -14.44306 -14.16012 -13.96517 -13.78356 -13.63476 -13.48659 -13.23833 -12.94822 -12.80224 -12.53521 -12.37092 -12.15195 -12.01273 -11.91644 -11.72356 -11.39113 -10.98667 -10.90045 -10.79946 -10.28793 -9.71288 -9.50656 -8.94389 -8.31325 -6.36412 0.30351 0.43882 1.35953 1.40665 1.48275 1.55932 1.69722 2.19229 2.32905 2.33826 2.83268 3.00758 3.05576 3.41459 3.42542 3.76164 4.00237 4.04525 4.13702 4.21426 4.29311 4.45459 4.47950 4.59564 4.65386 4.72386 4.78895 4.86933 4.91869 4.97401 5.02410 5.06544 5.12649 5.33307 5.41726 5.47924 5.55507 5.58920 5.66682 5.81093 5.98314 6.02170 6.10196 6.28737 6.65506 7.01163 7.22272 7.25613 7.61096 8.85731 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018015 B = 0.003460 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.921612 B = 8091.341416 C = 9095.047079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.615 5.615 3 C 0.241 3.759 4 C -0.536 4.536 5 H 0.027 0.973 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.232 1.232 12 C 0.696 3.304 13 O -0.617 6.617 14 N -0.673 5.673 15 C 0.173 3.827 16 C -0.147 4.147 17 C -0.105 4.105 18 C -0.134 4.134 19 C -0.092 4.092 20 C -0.124 4.124 21 C 0.182 3.818 22 H 0.106 0.894 23 C -0.119 4.119 24 C -0.147 4.147 25 C 0.517 3.483 26 O -0.585 6.585 27 N -0.712 5.712 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.021 0.979 33 H 0.267 0.733 34 H 0.417 0.583 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 -16.451 12.065 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.349 5.349 3 C 0.118 3.882 4 C -0.574 4.574 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.588 5.588 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.204 1.204 11 H -0.155 1.155 12 C 0.398 3.602 13 O -0.496 6.496 14 N -0.324 5.324 15 C 0.077 3.923 16 C -0.168 4.168 17 C -0.124 4.124 18 C -0.152 4.152 19 C -0.110 4.110 20 C -0.127 4.127 21 C 0.076 3.924 22 H 0.124 0.876 23 C -0.157 4.157 24 C -0.187 4.187 25 C 0.305 3.695 26 O -0.465 6.465 27 N -0.367 5.367 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.258 0.742 35 H 0.123 0.877 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.128 0.872 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.560 -16.588 12.297 22.352 hybrid contribution 0.461 0.545 -0.875 1.129 sum -8.099 -16.042 11.422 21.293 Atomic orbital electron populations 1.21984 0.77599 1.03830 1.03395 1.47086 1.07991 1.04369 1.75474 1.19276 0.92673 0.81199 0.95074 1.21612 1.36628 1.06572 0.92637 0.95505 1.25862 0.95354 0.99045 0.98572 1.70061 1.42835 1.24498 1.21423 0.85711 0.79615 0.77572 0.79993 1.20417 1.20379 1.15488 1.16048 0.85031 0.81111 0.78032 1.90871 1.13801 1.86373 1.58567 1.42536 1.10507 1.02311 1.77051 1.17337 0.93332 0.84951 0.96707 1.21341 0.96087 0.98448 1.00926 1.21264 1.00128 0.92149 0.98835 1.21362 0.96084 0.99332 0.98438 1.20963 0.94568 0.96600 0.98888 1.19688 0.98445 0.94176 1.00434 1.20436 0.90487 0.83975 0.97469 0.87646 1.22715 0.99577 1.01416 0.92005 1.22433 1.02189 0.92960 1.01128 1.21359 0.75851 0.90130 0.82172 1.90745 1.46119 1.39341 1.70322 1.46294 1.58351 1.15050 1.16967 0.89336 0.91011 0.90156 0.92443 0.96088 0.92374 0.74170 0.87666 0.84931 0.83396 0.83988 0.90339 0.87405 0.85407 0.87207 0.74497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.74 10.24 127.77 1.31 3.05 16 2 N -0.61 -22.64 2.86 -869.30 -2.48 -25.13 16 3 C 0.24 10.99 4.23 85.63 0.36 11.35 16 4 C -0.54 -30.49 9.94 25.60 0.25 -30.24 16 5 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 6 C 0.01 0.54 5.47 84.65 0.46 1.01 16 7 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 8 Si 0.95 43.06 27.47 68.60 1.88 44.95 16 9 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.23 -9.20 6.54 99.48 0.65 -8.55 16 12 C 0.70 26.41 8.12 179.06 1.45 27.86 16 13 O -0.62 -29.71 13.34 -4.00 -0.05 -29.76 16 14 N -0.67 -17.74 4.90 -317.18 -1.56 -19.30 16 15 C 0.17 4.52 6.29 38.15 0.24 4.76 16 16 C -0.15 -4.61 8.70 22.39 0.19 -4.41 16 17 C -0.11 -2.57 10.04 22.25 0.22 -2.34 16 18 C -0.13 -2.49 10.04 22.29 0.22 -2.27 16 19 C -0.09 -1.58 9.24 22.25 0.21 -1.38 16 20 C -0.12 -2.30 5.03 -19.75 -0.10 -2.40 16 21 C 0.18 2.33 3.33 44.69 0.15 2.48 16 22 H 0.11 1.00 6.94 -2.39 -0.02 0.98 16 23 C -0.12 -1.39 6.68 31.70 0.21 -1.17 16 24 C -0.15 -1.63 6.87 30.64 0.21 -1.42 16 25 C 0.52 9.18 8.43 87.90 0.74 9.92 16 26 O -0.58 -15.86 18.03 -3.04 -0.05 -15.91 16 27 N -0.71 -9.59 4.75 -442.97 -2.10 -11.69 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.87 8.07 -2.38 -0.02 1.86 16 30 H 0.08 1.40 6.30 -2.39 -0.02 1.39 16 31 H 0.06 2.35 7.13 -2.39 -0.02 2.33 16 32 H 0.02 1.04 6.85 -2.39 -0.02 1.02 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.42 7.61 5.12 -92.70 -0.47 7.14 16 35 H 0.11 4.22 6.20 -2.91 -0.02 4.20 16 36 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.14 1.92 6.97 -2.91 -0.02 1.90 16 39 H 0.08 1.12 7.91 -2.38 -0.02 1.10 16 40 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.42 4.95 8.51 -92.71 -0.79 4.16 16 Total: -1.00 -83.25 353.75 1.82 -81.44 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.26 Total: 19.48 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.14 Total: 14.80 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -5.84 Total: -114.98 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -0.11 Total: -45.67 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.95 kcal Total: -83.25 1.82 -81.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889156025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.935 kcal (2) G-P(sol) polarization free energy of solvation -83.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds