Wall clock time and date at job start Tue Mar 31 2020 11:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 120.00053 * 2 1 4 4 C 1.52995 * 109.47276 * 89.99594 * 3 2 1 5 5 C 1.52999 * 109.47066 * 179.97438 * 4 3 2 6 6 C 1.53002 * 117.50087 * 243.74710 * 5 4 3 7 7 C 1.53003 * 117.50083 * 175.08687 * 5 4 3 8 8 C 1.34775 * 119.99585 * 179.97438 * 2 1 3 9 9 O 1.21362 * 119.99471 * 185.16234 * 8 2 1 10 10 C 1.49358 * 120.00422 * 5.16145 * 8 2 1 11 11 O 1.21358 * 120.00119 * 6.22713 * 10 8 2 12 12 N 1.34782 * 120.00384 * 186.22626 * 10 8 2 13 13 C 1.39113 * 120.00233 * 174.97122 * 12 10 8 14 14 C 1.39703 * 119.57998 * 185.58291 * 13 12 10 15 15 C 1.38645 * 119.49680 * 179.76558 * 14 13 12 16 16 C 1.38351 * 118.66742 * 0.50049 * 15 14 13 17 17 C 1.40586 * 119.13881 * 359.74794 * 16 15 14 18 18 C 1.41339 * 119.79057 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99681 * 359.97438 * 18 17 16 20 20 C 1.40025 * 120.00170 * 179.97438 * 18 17 16 21 21 N 1.30736 * 120.00434 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47280 * 60.00291 * 22 20 18 24 24 H 1.48499 * 109.47067 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47140 * 300.00137 * 22 20 18 26 26 N 1.31937 * 119.57736 * 5.85981 * 13 12 10 27 27 H 1.09000 * 109.46632 * 95.73543 * 1 2 3 28 28 H 1.08997 * 109.46963 * 215.73791 * 1 2 3 29 29 H 1.08997 * 109.46720 * 335.73526 * 1 2 3 30 30 H 1.08994 * 109.46714 * 329.99402 * 3 2 1 31 31 H 1.09003 * 109.46697 * 209.99912 * 3 2 1 32 32 H 1.09003 * 109.47517 * 299.99815 * 4 3 2 33 33 H 1.09006 * 109.47299 * 59.99896 * 4 3 2 34 34 H 1.09000 * 115.55006 * 29.41732 * 5 4 3 35 35 H 1.09002 * 117.49634 * 0.02562 * 6 5 4 36 36 H 1.08999 * 117.49694 * 145.01684 * 6 5 4 37 37 H 1.08993 * 117.49903 * 214.97958 * 7 5 4 38 38 H 1.09004 * 117.49277 * 0.02562 * 7 5 4 39 39 H 0.97003 * 119.99560 * 354.97019 * 12 10 8 40 40 H 1.08006 * 120.24731 * 0.02562 * 14 13 12 41 41 H 1.08001 * 120.67082 * 180.25054 * 15 14 13 42 42 H 1.08005 * 120.42868 * 179.76681 * 16 15 14 43 43 H 0.97000 * 120.00217 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 1.4424 5 6 3.2181 3.0352 1.4424 6 6 4.6253 3.0379 2.0429 7 6 3.4707 3.7052 2.7945 8 6 2.1389 -1.1672 0.0005 9 8 3.3488 -1.1693 0.0951 10 6 1.3966 -2.4581 -0.1153 11 8 0.2010 -2.4541 -0.3231 12 7 2.0546 -3.6276 0.0110 13 6 1.3492 -4.8266 0.0079 14 6 2.0239 -6.0244 0.2562 15 6 1.3182 -7.2178 0.2575 16 6 -0.0408 -7.1856 0.0005 17 6 -0.6614 -5.9487 -0.2475 18 6 -2.0492 -5.8997 -0.5111 19 1 -2.6292 -6.8107 -0.5220 20 6 -2.6719 -4.6701 -0.7581 21 7 -1.9698 -3.5674 -0.7454 22 14 -4.5061 -4.6054 -1.1058 23 1 -5.2498 -5.1574 0.0550 24 1 -4.9174 -3.1967 -1.3332 25 1 -4.8092 -5.4107 -2.3161 26 7 0.0524 -4.8185 -0.2350 27 1 -0.3632 -0.1027 -1.0225 28 1 -0.3633 -0.8341 0.6002 29 1 -0.3633 0.9369 0.4223 30 1 1.6085 2.0283 -0.5139 31 1 3.1500 1.1383 -0.5138 32 1 1.5001 1.8409 1.9563 33 1 3.0416 0.9508 1.9564 34 1 3.0353 3.6838 0.5856 35 1 5.0059 2.0958 2.4377 36 1 5.3681 3.6886 1.5815 37 1 3.4545 4.7945 2.8272 38 1 3.0919 3.2020 3.6841 39 1 3.0202 -3.6332 0.1041 40 1 3.0864 -6.0203 0.4499 41 1 1.8200 -8.1544 0.4512 42 1 -0.6175 -8.0987 -0.0093 43 1 -2.4011 -2.7157 -0.9168 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890028487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:24 Heat of formation + Delta-G solvation = 22.641826 kcal Electronic energy + Delta-G solvation = -26402.334192 eV Core-core repulsion = 22642.855952 eV Total energy + Delta-G solvation = -3759.478240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.36582 -38.75898 -37.79776 -37.16394 -35.76250 -34.13989 -33.05239 -30.90356 -30.37693 -29.20535 -26.66728 -25.84536 -25.14230 -22.96211 -22.56367 -21.53691 -20.71975 -20.59321 -19.10118 -17.92286 -16.89077 -16.66659 -16.11681 -15.95695 -15.40031 -15.01064 -14.72804 -14.48818 -14.13020 -13.88840 -13.81823 -13.63298 -13.29898 -12.89521 -12.77163 -12.34414 -12.22909 -12.01694 -11.88866 -11.76555 -11.50721 -11.36116 -11.18493 -11.02643 -10.81105 -10.70818 -10.53948 -10.51956 -10.08406 -9.99963 -9.77564 -9.08941 -8.80174 -8.63601 -8.03571 -7.31591 -7.05460 -6.22830 -4.45807 1.93819 2.72860 2.82607 3.08411 3.11704 3.14606 3.23660 3.58212 3.91142 3.96373 4.01019 4.49304 4.69939 4.71536 4.85485 4.87087 5.03658 5.11190 5.31109 5.40343 5.42998 5.50293 5.68312 5.74614 5.86227 5.92186 5.94803 5.96602 6.06373 6.14769 6.23470 6.43760 6.53143 6.58269 6.76316 6.79215 7.15691 7.23595 7.45850 7.52606 7.75898 7.85801 8.04061 8.16886 8.36906 8.63213 8.93578 9.01749 10.13977 10.40513 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.003551 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.282685 B = 7884.226772 C = 9394.157862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.593 5.593 3 C 0.118 3.882 4 C -0.105 4.105 5 C -0.149 4.149 6 C -0.179 4.179 7 C -0.182 4.182 8 C 0.506 3.494 9 O -0.535 6.535 10 C 0.465 3.535 11 O -0.382 6.382 12 N -0.639 5.639 13 C 0.369 3.631 14 C -0.349 4.349 15 C -0.036 4.036 16 C -0.301 4.301 17 C 0.271 3.729 18 C -0.424 4.424 19 H 0.082 0.918 20 C 0.060 3.940 21 N -0.663 5.663 22 Si 0.898 3.102 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.267 1.267 26 N -0.474 5.474 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.411 0.589 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.919 13.038 2.789 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.326 5.326 3 C -0.004 4.004 4 C -0.144 4.144 5 C -0.168 4.168 6 C -0.216 4.216 7 C -0.219 4.219 8 C 0.289 3.711 9 O -0.412 6.412 10 C 0.242 3.758 11 O -0.245 6.245 12 N -0.288 5.288 13 C 0.131 3.869 14 C -0.375 4.375 15 C -0.060 4.060 16 C -0.324 4.324 17 C 0.146 3.854 18 C -0.454 4.454 19 H 0.101 0.899 20 C -0.168 4.168 21 N -0.282 5.282 22 Si 0.722 3.278 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.192 1.192 26 N -0.193 5.193 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.246 0.754 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.152 14.148 2.482 15.260 hybrid contribution 0.206 -0.671 0.074 0.706 sum 5.358 13.477 2.557 14.726 Atomic orbital electron populations 1.22200 0.77244 1.03112 1.03780 1.47718 1.08346 1.05005 1.71550 1.21515 0.97773 0.84313 0.96819 1.21546 1.00246 0.95055 0.97513 1.22206 0.98703 0.98654 0.97214 1.23057 0.91452 1.02872 1.04233 1.22970 1.03543 0.99701 0.95670 1.20855 0.87477 0.85770 0.76975 1.90684 1.14096 1.87562 1.48847 1.20111 0.88759 0.84463 0.82459 1.91167 1.11368 1.85060 1.36864 1.43021 1.10669 1.03882 1.71208 1.18547 0.91141 0.82955 0.94271 1.20516 0.98789 0.92416 1.25746 1.20583 0.94049 0.95667 0.95724 1.21649 0.94797 0.98451 1.17510 1.18359 0.93207 0.85625 0.88173 1.19544 0.91809 0.93926 1.40165 0.89939 1.26143 0.99565 0.95916 0.95201 1.70297 1.35134 0.97980 1.24748 0.86550 0.83425 0.78008 0.79776 1.19184 1.20363 1.19200 1.68649 1.01801 1.28667 1.20223 0.91685 0.88234 0.92229 0.90260 0.89758 0.91328 0.91105 0.87717 0.88632 0.88955 0.88933 0.88856 0.75385 0.88767 0.88395 0.88411 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 9.22 59.85 0.55 1.64 16 2 N -0.59 -8.61 2.87 -182.12 -0.52 -9.14 16 3 C 0.12 1.36 5.30 -4.04 -0.02 1.34 16 4 C -0.11 -1.12 5.82 -26.73 -0.16 -1.27 16 5 C -0.15 -1.33 5.73 -90.62 -0.52 -1.85 16 6 C -0.18 -1.58 10.18 -26.69 -0.27 -1.85 16 7 C -0.18 -1.49 10.25 -26.69 -0.27 -1.77 16 8 C 0.51 8.92 7.72 -11.63 -0.09 8.83 16 9 O -0.53 -9.91 16.12 5.49 0.09 -9.82 16 10 C 0.47 9.60 7.65 -11.63 -0.09 9.51 16 11 O -0.38 -8.76 9.16 5.49 0.05 -8.71 16 12 N -0.64 -13.35 5.37 -11.83 -0.06 -13.41 16 13 C 0.37 8.97 7.42 -155.09 -1.15 7.82 16 14 C -0.35 -7.85 9.95 -38.88 -0.39 -8.24 16 15 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 16 C -0.30 -7.41 9.83 -38.65 -0.38 -7.79 16 17 C 0.27 7.42 6.55 -85.00 -0.56 6.86 16 18 C -0.42 -11.25 9.14 -37.73 -0.34 -11.59 16 19 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 20 C 0.06 1.51 5.50 -17.35 -0.10 1.42 16 21 N -0.66 -17.11 9.00 55.55 0.50 -16.61 16 22 Si 0.90 18.40 29.56 -169.99 -5.02 13.38 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 N -0.47 -12.91 5.74 -10.28 -0.06 -12.97 16 27 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 28 H 0.10 1.67 5.98 -51.93 -0.31 1.36 16 29 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 30 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 31 H 0.08 1.05 7.50 -51.93 -0.39 0.66 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 34 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 35 H 0.10 0.91 8.03 -51.93 -0.42 0.49 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.41 7.42 8.18 -40.82 -0.33 7.09 16 40 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 41 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 43 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -30.33 362.28 -9.80 -40.12 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.04 Total: 9.85 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -4.18 Total: 1.85 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.15 Total: -52.13 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.14 Total: -18.54 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.33 -9.80 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890028487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.766 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds