Wall clock time and date at job start Tue Mar 31 2020 11:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 120.00053 * 2 1 4 4 C 1.52995 * 109.47276 * 89.99594 * 3 2 1 5 5 C 1.52999 * 109.47066 * 179.97438 * 4 3 2 6 6 C 1.53002 * 117.50087 * 243.74710 * 5 4 3 7 7 C 1.53003 * 117.50083 * 175.08687 * 5 4 3 8 8 C 1.34775 * 119.99585 * 179.97438 * 2 1 3 9 9 O 1.21362 * 119.99471 * 185.16234 * 8 2 1 10 10 C 1.49358 * 120.00422 * 5.16145 * 8 2 1 11 11 O 1.21358 * 120.00119 * 6.22713 * 10 8 2 12 12 N 1.34782 * 120.00384 * 186.22626 * 10 8 2 13 13 C 1.39113 * 120.00233 * 174.97122 * 12 10 8 14 14 C 1.39703 * 119.57998 * 185.58291 * 13 12 10 15 15 C 1.38645 * 119.49680 * 179.76558 * 14 13 12 16 16 C 1.38351 * 118.66742 * 0.50049 * 15 14 13 17 17 C 1.40586 * 119.13881 * 359.74794 * 16 15 14 18 18 C 1.41339 * 119.79057 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99681 * 359.97438 * 18 17 16 20 20 C 1.40025 * 120.00170 * 179.97438 * 18 17 16 21 21 N 1.30736 * 120.00434 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47280 * 60.00291 * 22 20 18 24 24 H 1.48499 * 109.47067 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47140 * 300.00137 * 22 20 18 26 26 N 1.31937 * 119.57736 * 5.85981 * 13 12 10 27 27 H 1.09000 * 109.46632 * 95.73543 * 1 2 3 28 28 H 1.08997 * 109.46963 * 215.73791 * 1 2 3 29 29 H 1.08997 * 109.46720 * 335.73526 * 1 2 3 30 30 H 1.08994 * 109.46714 * 329.99402 * 3 2 1 31 31 H 1.09003 * 109.46697 * 209.99912 * 3 2 1 32 32 H 1.09003 * 109.47517 * 299.99815 * 4 3 2 33 33 H 1.09006 * 109.47299 * 59.99896 * 4 3 2 34 34 H 1.09000 * 115.55006 * 29.41732 * 5 4 3 35 35 H 1.09002 * 117.49634 * 0.02562 * 6 5 4 36 36 H 1.08999 * 117.49694 * 145.01684 * 6 5 4 37 37 H 1.08993 * 117.49903 * 214.97958 * 7 5 4 38 38 H 1.09004 * 117.49277 * 0.02562 * 7 5 4 39 39 H 0.97003 * 119.99560 * 354.97019 * 12 10 8 40 40 H 1.08006 * 120.24731 * 0.02562 * 14 13 12 41 41 H 1.08001 * 120.67082 * 180.25054 * 15 14 13 42 42 H 1.08005 * 120.42868 * 179.76681 * 16 15 14 43 43 H 0.97000 * 120.00217 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 1.4424 5 6 3.2181 3.0352 1.4424 6 6 4.6253 3.0379 2.0429 7 6 3.4707 3.7052 2.7945 8 6 2.1389 -1.1672 0.0005 9 8 3.3488 -1.1693 0.0951 10 6 1.3966 -2.4581 -0.1153 11 8 0.2010 -2.4541 -0.3231 12 7 2.0546 -3.6276 0.0110 13 6 1.3492 -4.8266 0.0079 14 6 2.0239 -6.0244 0.2562 15 6 1.3182 -7.2178 0.2575 16 6 -0.0408 -7.1856 0.0005 17 6 -0.6614 -5.9487 -0.2475 18 6 -2.0492 -5.8997 -0.5111 19 1 -2.6292 -6.8107 -0.5220 20 6 -2.6719 -4.6701 -0.7581 21 7 -1.9698 -3.5674 -0.7454 22 14 -4.5061 -4.6054 -1.1058 23 1 -5.2498 -5.1574 0.0550 24 1 -4.9174 -3.1967 -1.3332 25 1 -4.8092 -5.4107 -2.3161 26 7 0.0524 -4.8185 -0.2350 27 1 -0.3632 -0.1027 -1.0225 28 1 -0.3633 -0.8341 0.6002 29 1 -0.3633 0.9369 0.4223 30 1 1.6085 2.0283 -0.5139 31 1 3.1500 1.1383 -0.5138 32 1 1.5001 1.8409 1.9563 33 1 3.0416 0.9508 1.9564 34 1 3.0353 3.6838 0.5856 35 1 5.0059 2.0958 2.4377 36 1 5.3681 3.6886 1.5815 37 1 3.4545 4.7945 2.8272 38 1 3.0919 3.2020 3.6841 39 1 3.0202 -3.6332 0.1041 40 1 3.0864 -6.0203 0.4499 41 1 1.8200 -8.1544 0.4512 42 1 -0.6175 -8.0987 -0.0093 43 1 -2.4011 -2.7157 -0.9168 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890028487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:23 Heat of formation + Delta-G solvation = 6.130382 kcal Electronic energy + Delta-G solvation = -26403.050182 eV Core-core repulsion = 22642.855952 eV Total energy + Delta-G solvation = -3760.194230 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84546 -40.37047 -39.01750 -38.46765 -37.03465 -35.84723 -34.83619 -32.26627 -31.86706 -31.04161 -27.95802 -27.55854 -26.49988 -24.38411 -23.33892 -23.20975 -22.27526 -21.39658 -20.65413 -19.60607 -18.46692 -18.20294 -17.53102 -17.18942 -16.48043 -16.40892 -16.29069 -16.21403 -15.59296 -15.28628 -15.24790 -14.71940 -14.68379 -14.49549 -14.13129 -13.88378 -13.75428 -13.29758 -13.21015 -12.84465 -12.73700 -12.57124 -12.49405 -12.36785 -12.30567 -12.25426 -12.12606 -11.76463 -11.54896 -11.23383 -10.89011 -10.81136 -10.39184 -9.92689 -9.82818 -9.15254 -8.89768 -8.06814 -6.40960 0.39120 1.04428 1.27885 1.37398 1.44703 1.54717 1.57768 2.29555 2.36240 2.50991 2.90985 2.99812 3.39114 3.72961 3.98612 3.99456 4.02614 4.16782 4.24710 4.33339 4.37916 4.51534 4.65039 4.67944 4.74998 4.80203 4.82197 4.88960 4.94661 4.96777 5.02289 5.05818 5.11655 5.27071 5.29601 5.36555 5.43175 5.64587 5.73833 5.90416 5.95422 6.11727 6.28083 6.50374 6.70725 6.83814 7.05362 7.31240 8.25919 8.57541 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.003551 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.282685 B = 7884.226772 C = 9394.157862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.581 5.581 3 C 0.116 3.884 4 C -0.098 4.098 5 C -0.151 4.151 6 C -0.188 4.188 7 C -0.176 4.176 8 C 0.510 3.490 9 O -0.548 6.548 10 C 0.455 3.545 11 O -0.406 6.406 12 N -0.636 5.636 13 C 0.349 3.651 14 C -0.345 4.345 15 C -0.033 4.033 16 C -0.323 4.323 17 C 0.237 3.763 18 C -0.460 4.460 19 H 0.086 0.914 20 C 0.015 3.985 21 N -0.690 5.690 22 Si 0.976 3.024 23 H -0.264 1.264 24 H -0.269 1.269 25 H -0.265 1.265 26 N -0.504 5.504 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.422 0.578 40 H 0.127 0.873 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 14.627 2.821 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.314 5.314 3 C -0.005 4.005 4 C -0.137 4.137 5 C -0.169 4.169 6 C -0.225 4.225 7 C -0.213 4.213 8 C 0.293 3.707 9 O -0.427 6.427 10 C 0.234 3.766 11 O -0.270 6.270 12 N -0.285 5.285 13 C 0.111 3.889 14 C -0.371 4.371 15 C -0.057 4.057 16 C -0.346 4.346 17 C 0.111 3.889 18 C -0.491 4.491 19 H 0.104 0.896 20 C -0.210 4.210 21 N -0.309 5.309 22 Si 0.797 3.203 23 H -0.188 1.188 24 H -0.193 1.193 25 H -0.190 1.190 26 N -0.224 5.224 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.141 0.859 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.260 0.740 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.126 0.874 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.308 15.764 2.524 16.824 hybrid contribution 0.292 -1.161 0.106 1.202 sum 5.600 14.603 2.630 15.859 Atomic orbital electron populations 1.22127 0.76656 1.03891 1.03100 1.47815 1.08793 1.05101 1.69641 1.21791 0.97691 0.83239 0.97757 1.21443 1.00359 0.95369 0.96490 1.22215 0.98373 0.97976 0.98376 1.23102 0.91919 1.02731 1.04783 1.23041 1.02559 1.00581 0.95075 1.20262 0.87085 0.85601 0.77794 1.90678 1.14237 1.87620 1.50117 1.20733 0.88815 0.85435 0.81655 1.91173 1.12535 1.85693 1.37638 1.43028 1.11145 1.03330 1.71027 1.18988 0.90971 0.84747 0.94199 1.20941 1.00388 0.91817 1.23931 1.21028 0.93317 0.97353 0.94032 1.21841 0.96170 0.98047 1.18545 1.18855 0.94139 0.86814 0.89057 1.19875 0.92271 0.94963 1.41989 0.89599 1.26947 1.04260 0.95129 0.94710 1.70436 1.37049 0.98395 1.25046 0.85375 0.77208 0.78307 0.79433 1.18827 1.19314 1.18964 1.68609 1.03206 1.29176 1.21371 0.92260 0.91331 0.88269 0.86889 0.90525 0.90780 0.93685 0.85911 0.90043 0.87724 0.87273 0.89288 0.74013 0.85518 0.84440 0.87436 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.26 9.22 127.77 1.18 3.44 16 2 N -0.58 -16.37 2.87 -848.46 -2.44 -18.81 16 3 C 0.12 2.43 5.30 86.38 0.46 2.89 16 4 C -0.10 -1.93 5.82 30.59 0.18 -1.75 16 5 C -0.15 -2.34 5.73 -10.79 -0.06 -2.40 16 6 C -0.19 -3.04 10.18 30.62 0.31 -2.73 16 7 C -0.18 -2.51 10.25 30.62 0.31 -2.20 16 8 C 0.51 18.03 7.72 87.24 0.67 18.71 16 9 O -0.55 -20.25 16.12 -3.28 -0.05 -20.30 16 10 C 0.46 19.25 7.65 87.24 0.67 19.92 16 11 O -0.41 -19.32 9.16 -3.27 -0.03 -19.35 16 12 N -0.64 -26.91 5.37 -309.71 -1.66 -28.57 16 13 C 0.35 17.20 7.42 133.30 0.99 18.19 16 14 C -0.35 -15.19 9.95 22.72 0.23 -14.96 16 15 C -0.03 -1.45 10.15 22.39 0.23 -1.22 16 16 C -0.32 -16.08 9.83 22.87 0.22 -15.86 16 17 C 0.24 13.34 6.55 40.20 0.26 13.60 16 18 C -0.46 -25.25 9.14 23.47 0.21 -25.04 16 19 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 20 C 0.02 0.79 5.50 85.29 0.47 1.26 16 21 N -0.69 -36.74 9.00 21.84 0.20 -36.54 16 22 Si 0.98 38.41 29.56 68.60 2.03 40.44 16 23 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 24 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 26 N -0.50 -28.28 5.74 -186.43 -1.07 -29.35 16 27 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 28 H 0.07 2.34 5.98 -2.39 -0.01 2.33 16 29 H 0.10 1.87 8.03 -2.39 -0.02 1.85 16 30 H 0.11 1.66 8.07 -2.39 -0.02 1.64 16 31 H 0.08 1.78 7.50 -2.39 -0.02 1.76 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.04 1.12 7.87 -2.38 -0.02 1.10 16 34 H 0.12 1.49 8.08 -2.39 -0.02 1.47 16 35 H 0.08 1.53 8.03 -2.39 -0.02 1.52 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.42 15.26 8.18 -92.71 -0.76 14.50 16 40 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 43 H 0.28 13.45 8.29 -92.71 -0.77 12.68 16 Total: -1.00 -67.93 362.28 3.58 -64.35 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: 0.28 Total: 36.28 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 6.33 Total: 11.85 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -4.97 Total: -113.27 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.08 Total: -39.65 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -67.93 3.58 -64.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890028487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.480 kcal (2) G-P(sol) polarization free energy of solvation -67.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds