Wall clock time and date at job start Tue Mar 31 2020 11:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 119.99830 * 2 1 4 4 O 1.21586 * 120.00385 * 0.02562 * 3 2 1 5 5 N 1.34783 * 120.00113 * 180.02562 * 3 2 1 6 6 C 1.39975 * 120.00241 * 185.52909 * 5 3 2 7 7 C 1.38984 * 119.99926 * 214.53657 * 6 5 3 8 8 C 1.38211 * 120.22599 * 180.02562 * 7 6 5 9 9 C 1.38021 * 120.22047 * 359.67974 * 8 7 6 10 10 C 1.39572 * 119.99284 * 0.61774 * 9 8 7 11 11 C 1.47862 * 120.11235 * 179.67992 * 10 9 8 12 12 O 1.21551 * 120.00026 * 184.84556 * 11 10 9 13 13 N 1.34777 * 119.99968 * 4.83902 * 11 10 9 14 14 C 1.46500 * 120.00108 * 185.06224 * 13 11 10 15 15 C 1.53003 * 109.46934 * 185.00091 * 14 13 11 16 16 C 1.50697 * 115.54993 * 54.39758 * 15 14 13 17 17 H 1.08001 * 120.00122 * 215.58870 * 16 15 14 18 18 C 1.37882 * 120.00111 * 35.32094 * 16 15 14 19 19 N 1.31516 * 120.00058 * 355.67313 * 18 16 15 20 20 Si 1.86796 * 120.00018 * 175.67695 * 18 16 15 21 21 H 1.48504 * 109.47416 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47297 * 119.99764 * 20 18 16 23 23 H 1.48500 * 109.47177 * 239.99526 * 20 18 16 24 24 C 1.52998 * 117.49742 * 200.07106 * 15 14 13 25 25 C 1.52997 * 117.49710 * 268.72842 * 15 14 13 26 26 C 1.38588 * 119.99784 * 34.55538 * 6 5 3 27 27 H 1.09004 * 109.46612 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46734 * 299.99891 * 1 2 3 29 29 H 1.09002 * 109.46960 * 59.99745 * 1 2 3 30 30 H 0.96998 * 120.00177 * 180.02562 * 2 1 3 31 31 H 0.97004 * 119.99612 * 5.52756 * 5 3 2 32 32 H 1.08001 * 119.88705 * 359.97438 * 7 6 5 33 33 H 1.08004 * 119.88652 * 179.97438 * 8 7 6 34 34 H 1.08002 * 120.00088 * 180.29556 * 9 8 7 35 35 H 0.97002 * 119.99827 * 5.06886 * 13 11 10 36 36 H 1.08999 * 109.47223 * 65.00094 * 14 13 11 37 37 H 1.08999 * 109.46808 * 304.99575 * 14 13 11 38 38 H 0.96990 * 120.00172 * 185.00479 * 19 18 16 39 39 H 1.09005 * 117.49757 * 215.00775 * 24 15 14 40 40 H 1.09000 * 117.49624 * 0.02562 * 24 15 14 41 41 H 1.08997 * 117.50055 * 359.97438 * 25 15 14 42 42 H 1.08997 * 117.49832 * 144.97829 * 25 15 14 43 43 H 1.07995 * 120.11223 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.1866 2.3738 0.1163 7 6 5.3925 2.5453 -0.5532 8 6 6.0877 3.7345 -0.4407 9 6 5.5859 4.7622 0.3319 10 6 4.3788 4.5977 1.0131 11 6 3.8423 5.6944 1.8472 12 8 2.8380 5.5192 2.5090 13 7 4.4670 6.8884 1.8737 14 6 4.0015 7.9386 2.7829 15 6 4.7945 9.2221 2.5279 16 6 4.7926 9.7152 1.1039 17 1 5.6746 10.1846 0.6938 18 6 3.6667 9.5623 0.3229 19 7 2.6247 8.9109 0.7916 20 14 3.6213 10.2801 -1.4011 21 1 4.9096 10.9609 -1.6879 22 1 3.4072 9.1894 -2.3860 23 1 2.5108 11.2611 -1.4998 24 6 4.8136 10.2731 3.6396 25 6 6.0659 9.4420 3.3500 26 6 3.6773 3.3972 0.8997 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9501 -0.8400 -0.0004 31 1 3.9717 0.3311 -0.0818 32 1 5.7880 1.7462 -1.1626 33 1 7.0245 3.8616 -0.9630 34 1 6.1297 5.6917 0.4134 35 1 5.2247 7.0524 1.2907 36 1 4.1501 7.6185 3.8141 37 1 2.9418 8.1258 2.6095 38 1 1.8613 8.7402 0.2181 39 1 4.8247 11.3214 3.3409 40 1 4.2617 10.0500 4.5527 41 1 6.3373 8.6725 4.0727 42 1 6.9012 9.9430 2.8608 43 1 2.7408 3.2657 1.4213 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907934817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:01 Heat of formation + Delta-G solvation = -1.701833 kcal Electronic energy + Delta-G solvation = -26229.374508 eV Core-core repulsion = 22468.840647 eV Total energy + Delta-G solvation = -3760.533861 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69576 -39.23492 -37.84628 -36.53007 -34.93420 -34.65767 -32.96181 -32.11799 -30.84490 -29.67551 -26.70314 -26.06475 -25.33234 -23.06512 -22.66037 -21.21901 -20.91396 -19.68925 -19.22847 -18.78222 -17.88072 -16.50910 -16.12568 -15.86459 -15.51140 -15.15459 -14.79274 -14.76883 -14.56567 -14.15660 -13.93023 -13.68644 -13.50220 -13.17802 -12.94456 -12.48855 -12.45345 -12.38952 -11.77188 -11.60699 -11.45049 -11.29607 -11.03625 -10.65163 -10.47541 -10.43048 -10.19768 -10.13047 -9.67658 -9.38189 -9.05415 -8.87175 -8.80127 -8.71837 -8.23837 -8.06618 -7.72915 -5.92276 -4.13996 1.15565 1.51819 2.42872 2.98421 3.26634 3.36489 3.38298 3.53666 3.92220 4.20062 4.35097 4.42731 4.91318 4.96763 5.01803 5.09252 5.32399 5.38295 5.47348 5.52148 5.56767 5.64546 5.73399 6.03136 6.07889 6.14147 6.26021 6.34683 6.42505 6.55341 6.59150 6.64728 6.70466 6.72597 6.76456 6.93753 7.10831 7.16571 7.29412 7.64812 7.69918 7.74430 8.04715 8.36111 8.37764 8.66495 8.88830 9.28901 9.50164 10.96172 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.003461 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.242532 B = 8087.362086 C = 8301.366361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.748 5.748 3 C 0.696 3.304 4 O -0.558 6.558 5 N -0.686 5.686 6 C 0.149 3.851 7 C -0.134 4.134 8 C -0.108 4.108 9 C -0.102 4.102 10 C -0.097 4.097 11 C 0.545 3.455 12 O -0.552 6.552 13 N -0.674 5.674 14 C 0.163 3.837 15 C 0.037 3.963 16 C -0.501 4.501 17 H 0.061 0.939 18 C 0.075 3.925 19 N -0.863 5.863 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.199 4.199 25 C -0.213 4.213 26 C -0.065 4.065 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.397 0.603 31 H 0.404 0.596 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.396 0.604 36 H 0.018 0.982 37 H 0.119 0.881 38 H 0.264 0.736 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 -19.783 -3.145 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.404 5.404 3 C 0.396 3.604 4 O -0.432 6.432 5 N -0.334 5.334 6 C 0.055 3.945 7 C -0.155 4.155 8 C -0.127 4.127 9 C -0.122 4.122 10 C -0.100 4.100 11 C 0.331 3.669 12 O -0.432 6.432 13 N -0.320 5.320 14 C 0.041 3.959 15 C 0.036 3.964 16 C -0.538 4.538 17 H 0.079 0.921 18 C -0.130 4.130 19 N -0.498 5.498 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.238 4.238 25 C -0.250 4.250 26 C -0.086 4.086 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.230 0.770 31 H 0.239 0.761 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.231 0.769 36 H 0.036 0.964 37 H 0.136 0.864 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.696 -18.931 -2.667 19.307 hybrid contribution 0.778 -0.343 -1.340 1.587 sum 3.473 -19.274 -4.007 19.990 Atomic orbital electron populations 1.21447 0.77659 1.02006 1.02799 1.44894 1.07984 1.06812 1.80724 1.16018 0.81483 0.84692 0.78232 1.91071 1.67223 1.29778 1.55116 1.42503 1.04927 1.08525 1.77453 1.17304 0.92952 0.86531 0.97729 1.20898 0.95643 0.98794 1.00143 1.20826 1.00009 0.92594 0.99277 1.21428 0.95259 0.99273 0.96237 1.20150 0.95469 0.95089 0.99340 1.18016 0.83809 0.82840 0.82266 1.90702 1.24510 1.82778 1.45222 1.45520 1.33293 1.11996 1.41240 1.21105 1.03147 0.84193 0.87496 1.19242 0.92726 0.92516 0.91912 1.20517 0.98748 1.39869 0.94664 0.92068 1.25009 0.95213 0.94541 0.98222 1.69847 1.06271 1.38365 1.35325 0.86538 0.78113 0.79152 0.84270 1.19759 1.20898 1.20880 1.22938 1.01578 0.97749 1.01515 1.22952 0.92783 1.03790 1.05474 1.21223 1.00195 0.91443 0.95789 0.90580 0.91956 0.92148 0.77024 0.76062 0.85813 0.85232 0.85051 0.76874 0.96385 0.86389 0.92568 0.90239 0.91482 0.91364 0.90639 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.84 10.70 59.85 0.64 1.48 16 2 N -0.75 -6.45 5.72 -72.07 -0.41 -6.86 16 3 C 0.70 9.30 8.29 -86.92 -0.72 8.58 16 4 O -0.56 -10.63 14.12 5.29 0.07 -10.56 16 5 N -0.69 -7.56 5.34 -14.25 -0.08 -7.64 16 6 C 0.15 2.12 6.25 -83.73 -0.52 1.59 16 7 C -0.13 -1.57 9.96 -39.31 -0.39 -1.96 16 8 C -0.11 -1.34 10.02 -39.67 -0.40 -1.74 16 9 C -0.10 -1.59 9.52 -39.16 -0.37 -1.96 16 10 C -0.10 -1.85 5.87 -104.99 -0.62 -2.46 16 11 C 0.55 12.59 7.76 -12.32 -0.10 12.49 16 12 O -0.55 -14.71 16.34 5.32 0.09 -14.63 16 13 N -0.67 -15.24 4.98 -61.24 -0.30 -15.55 16 14 C 0.16 4.01 4.62 -4.04 -0.02 3.99 16 15 C 0.04 0.88 2.04 -155.66 -0.32 0.56 16 16 C -0.50 -12.94 8.44 -34.44 -0.29 -13.23 16 17 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 18 C 0.08 1.98 5.32 -17.82 -0.09 1.89 16 19 N -0.86 -24.03 10.11 55.43 0.56 -23.47 16 20 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.20 -4.42 9.96 -26.70 -0.27 -4.68 16 25 C -0.21 -4.45 9.92 -26.70 -0.26 -4.72 16 26 C -0.07 -1.20 8.19 -38.98 -0.32 -1.52 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.40 1.84 8.85 -40.82 -0.36 1.47 16 31 H 0.40 2.60 8.84 -40.82 -0.36 2.24 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.13 1.90 6.46 -52.49 -0.34 1.56 16 35 H 0.40 8.33 6.21 -40.82 -0.25 8.08 16 36 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 37 H 0.12 3.34 5.88 -51.93 -0.31 3.03 16 38 H 0.26 7.29 8.32 -40.82 -0.34 6.95 16 39 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 43 H 0.15 3.08 6.11 -52.49 -0.32 2.76 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -34.98 364.01 -9.37 -44.35 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -5.71 Total: 14.79 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -4.05 Total: -1.70 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.23 Total: -53.52 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.16 Total: -25.18 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.98 -9.37 -44.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907934817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.649 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds