Wall clock time and date at job start Tue Mar 31 2020 11:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 119.99830 * 2 1 4 4 O 1.21586 * 120.00385 * 0.02562 * 3 2 1 5 5 N 1.34783 * 120.00113 * 180.02562 * 3 2 1 6 6 C 1.39975 * 120.00241 * 185.52909 * 5 3 2 7 7 C 1.38984 * 119.99926 * 214.53657 * 6 5 3 8 8 C 1.38211 * 120.22599 * 180.02562 * 7 6 5 9 9 C 1.38021 * 120.22047 * 359.67974 * 8 7 6 10 10 C 1.39572 * 119.99284 * 0.61774 * 9 8 7 11 11 C 1.47862 * 120.11235 * 179.67992 * 10 9 8 12 12 O 1.21551 * 120.00026 * 184.84556 * 11 10 9 13 13 N 1.34777 * 119.99968 * 4.83902 * 11 10 9 14 14 C 1.46500 * 120.00108 * 185.06224 * 13 11 10 15 15 C 1.53003 * 109.46934 * 185.00091 * 14 13 11 16 16 C 1.50697 * 115.54993 * 54.39758 * 15 14 13 17 17 H 1.08001 * 120.00122 * 215.58870 * 16 15 14 18 18 C 1.37882 * 120.00111 * 35.32094 * 16 15 14 19 19 N 1.31516 * 120.00058 * 355.67313 * 18 16 15 20 20 Si 1.86796 * 120.00018 * 175.67695 * 18 16 15 21 21 H 1.48504 * 109.47416 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47297 * 119.99764 * 20 18 16 23 23 H 1.48500 * 109.47177 * 239.99526 * 20 18 16 24 24 C 1.52998 * 117.49742 * 200.07106 * 15 14 13 25 25 C 1.52997 * 117.49710 * 268.72842 * 15 14 13 26 26 C 1.38588 * 119.99784 * 34.55538 * 6 5 3 27 27 H 1.09004 * 109.46612 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46734 * 299.99891 * 1 2 3 29 29 H 1.09002 * 109.46960 * 59.99745 * 1 2 3 30 30 H 0.96998 * 120.00177 * 180.02562 * 2 1 3 31 31 H 0.97004 * 119.99612 * 5.52756 * 5 3 2 32 32 H 1.08001 * 119.88705 * 359.97438 * 7 6 5 33 33 H 1.08004 * 119.88652 * 179.97438 * 8 7 6 34 34 H 1.08002 * 120.00088 * 180.29556 * 9 8 7 35 35 H 0.97002 * 119.99827 * 5.06886 * 13 11 10 36 36 H 1.08999 * 109.47223 * 65.00094 * 14 13 11 37 37 H 1.08999 * 109.46808 * 304.99575 * 14 13 11 38 38 H 0.96990 * 120.00172 * 185.00479 * 19 18 16 39 39 H 1.09005 * 117.49757 * 215.00775 * 24 15 14 40 40 H 1.09000 * 117.49624 * 0.02562 * 24 15 14 41 41 H 1.08997 * 117.50055 * 359.97438 * 25 15 14 42 42 H 1.08997 * 117.49832 * 144.97829 * 25 15 14 43 43 H 1.07995 * 120.11223 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.1866 2.3738 0.1163 7 6 5.3925 2.5453 -0.5532 8 6 6.0877 3.7345 -0.4407 9 6 5.5859 4.7622 0.3319 10 6 4.3788 4.5977 1.0131 11 6 3.8423 5.6944 1.8472 12 8 2.8380 5.5192 2.5090 13 7 4.4670 6.8884 1.8737 14 6 4.0015 7.9386 2.7829 15 6 4.7945 9.2221 2.5279 16 6 4.7926 9.7152 1.1039 17 1 5.6746 10.1846 0.6938 18 6 3.6667 9.5623 0.3229 19 7 2.6247 8.9109 0.7916 20 14 3.6213 10.2801 -1.4011 21 1 4.9096 10.9609 -1.6879 22 1 3.4072 9.1894 -2.3860 23 1 2.5108 11.2611 -1.4998 24 6 4.8136 10.2731 3.6396 25 6 6.0659 9.4420 3.3500 26 6 3.6773 3.3972 0.8997 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9501 -0.8400 -0.0004 31 1 3.9717 0.3311 -0.0818 32 1 5.7880 1.7462 -1.1626 33 1 7.0245 3.8616 -0.9630 34 1 6.1297 5.6917 0.4134 35 1 5.2247 7.0524 1.2907 36 1 4.1501 7.6185 3.8141 37 1 2.9418 8.1258 2.6095 38 1 1.8613 8.7402 0.2181 39 1 4.8247 11.3214 3.3409 40 1 4.2617 10.0500 4.5527 41 1 6.3373 8.6725 4.0727 42 1 6.9012 9.9430 2.8608 43 1 2.7408 3.2657 1.4213 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907934817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:01 Heat of formation + Delta-G solvation = -27.943266 kcal Electronic energy + Delta-G solvation = -26230.512422 eV Core-core repulsion = 22468.840647 eV Total energy + Delta-G solvation = -3761.671774 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.78979 -40.74121 -39.27423 -38.34589 -35.93794 -35.74452 -34.78246 -34.12726 -32.09406 -30.79485 -28.02042 -27.49352 -27.17899 -24.48734 -23.74211 -22.96009 -21.95653 -21.24560 -21.11738 -19.76327 -19.35699 -18.13908 -17.37497 -17.19177 -16.75559 -16.67057 -16.54628 -15.98533 -15.91308 -15.66701 -15.39924 -15.19017 -14.72324 -14.59822 -14.20635 -14.13628 -13.75536 -13.49947 -13.34202 -13.09043 -12.95305 -12.78934 -12.60447 -12.54539 -12.27179 -12.02652 -11.62597 -11.56372 -11.30255 -10.94645 -10.80301 -10.64437 -10.26320 -10.16577 -9.98693 -9.60849 -9.13357 -7.93537 -6.20981 -0.08263 0.34615 1.39690 1.44375 1.53904 1.54106 1.87429 2.12811 2.40351 2.51023 2.97579 3.07643 3.22247 3.63831 3.89877 3.96460 4.17711 4.25363 4.30167 4.38866 4.49150 4.53089 4.56029 4.60492 4.74956 4.79888 4.89885 4.95405 4.97097 5.12545 5.21497 5.31034 5.32740 5.35230 5.44709 5.48884 5.53587 5.60199 5.87159 5.91146 5.98226 5.99709 6.36292 6.78058 6.95869 6.96305 7.44262 7.45167 7.51510 8.91327 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.003461 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.242532 B = 8087.362086 C = 8301.366361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.726 5.726 3 C 0.686 3.314 4 O -0.623 6.623 5 N -0.667 5.667 6 C 0.148 3.852 7 C -0.106 4.106 8 C -0.094 4.094 9 C -0.106 4.106 10 C -0.130 4.130 11 C 0.537 3.463 12 O -0.605 6.605 13 N -0.667 5.667 14 C 0.173 3.827 15 C 0.005 3.995 16 C -0.501 4.501 17 H 0.064 0.936 18 C 0.031 3.969 19 N -0.892 5.892 20 Si 0.949 3.051 21 H -0.258 1.258 22 H -0.287 1.287 23 H -0.290 1.290 24 C -0.200 4.200 25 C -0.181 4.181 26 C -0.093 4.093 27 H 0.123 0.877 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.421 0.579 31 H 0.430 0.570 32 H 0.178 0.822 33 H 0.177 0.823 34 H 0.139 0.861 35 H 0.404 0.596 36 H 0.017 0.983 37 H 0.076 0.924 38 H 0.253 0.747 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.796 -21.985 -5.222 23.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.383 5.383 3 C 0.387 3.613 4 O -0.502 6.502 5 N -0.317 5.317 6 C 0.053 3.947 7 C -0.127 4.127 8 C -0.112 4.112 9 C -0.125 4.125 10 C -0.134 4.134 11 C 0.325 3.675 12 O -0.489 6.489 13 N -0.313 5.313 14 C 0.049 3.951 15 C 0.004 3.996 16 C -0.539 4.539 17 H 0.083 0.917 18 C -0.170 4.170 19 N -0.529 5.529 20 Si 0.776 3.224 21 H -0.181 1.181 22 H -0.214 1.214 23 H -0.216 1.216 24 C -0.239 4.239 25 C -0.218 4.218 26 C -0.114 4.114 27 H 0.142 0.858 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.258 0.742 31 H 0.270 0.730 32 H 0.195 0.805 33 H 0.194 0.806 34 H 0.156 0.844 35 H 0.241 0.759 36 H 0.035 0.965 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.274 -21.204 -4.756 22.618 hybrid contribution -0.292 0.250 -0.676 0.778 sum 5.982 -20.954 -5.432 22.458 Atomic orbital electron populations 1.21590 0.77132 1.04493 1.01074 1.44742 1.08295 1.06404 1.78829 1.16392 0.82130 0.84938 0.77889 1.91047 1.68672 1.32535 1.57990 1.42257 1.04201 1.08779 1.76510 1.17421 0.93915 0.86458 0.96920 1.21459 0.93374 0.99759 0.98098 1.21357 1.01095 0.91309 0.97415 1.21587 0.93794 1.00879 0.96282 1.19872 0.97869 0.94156 1.01455 1.18789 0.83031 0.83740 0.81917 1.90650 1.26888 1.83762 1.47599 1.45408 1.33315 1.11575 1.41027 1.20780 1.01091 0.85367 0.87815 1.19263 0.95575 0.92756 0.91991 1.20756 0.98464 1.39098 0.95535 0.91741 1.25662 0.94980 0.94909 1.01464 1.70087 1.06683 1.40137 1.36023 0.85637 0.78278 0.78085 0.80445 1.18148 1.21380 1.21609 1.22963 1.02662 0.97384 1.00878 1.22953 0.91841 1.03045 1.03966 1.21006 0.99313 0.93253 0.97877 0.85845 0.94159 0.93560 0.74218 0.72960 0.80490 0.80576 0.84375 0.75948 0.96524 0.90567 0.93777 0.90242 0.90805 0.89646 0.89268 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.55 10.70 127.77 1.37 2.92 16 2 N -0.73 -11.57 5.72 -500.18 -2.86 -14.43 16 3 C 0.69 18.38 8.29 179.05 1.48 19.86 16 4 O -0.62 -25.39 14.12 -3.99 -0.06 -25.45 16 5 N -0.67 -13.50 5.34 -317.27 -1.70 -15.19 16 6 C 0.15 4.00 6.25 38.10 0.24 4.24 16 7 C -0.11 -1.99 9.96 22.44 0.22 -1.77 16 8 C -0.09 -1.90 10.02 22.21 0.22 -1.68 16 9 C -0.11 -3.15 9.52 22.54 0.21 -2.93 16 10 C -0.13 -5.19 5.87 -20.10 -0.12 -5.30 16 11 C 0.54 26.64 7.76 86.79 0.67 27.31 16 12 O -0.60 -35.43 16.34 -3.88 -0.06 -35.49 16 13 N -0.67 -31.58 4.98 -465.95 -2.32 -33.90 16 14 C 0.17 8.92 4.62 86.38 0.40 9.32 16 15 C 0.00 0.23 2.04 -52.93 -0.11 0.12 16 16 C -0.50 -25.86 8.44 25.60 0.22 -25.65 16 17 H 0.06 3.23 7.82 -2.91 -0.02 3.21 16 18 C 0.03 1.67 5.32 84.66 0.45 2.12 16 19 N -0.89 -52.11 10.11 21.45 0.22 -51.90 16 20 Si 0.95 43.20 29.54 68.60 2.03 45.22 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 24 C -0.20 -8.77 9.96 30.62 0.30 -8.46 16 25 C -0.18 -7.24 9.92 30.62 0.30 -6.94 16 26 C -0.09 -3.61 8.19 22.66 0.19 -3.42 16 27 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.42 2.64 8.85 -92.71 -0.82 1.82 16 31 H 0.43 3.90 8.84 -92.71 -0.82 3.08 16 32 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.14 3.81 6.46 -2.91 -0.02 3.79 16 35 H 0.40 17.38 6.21 -92.71 -0.58 16.80 16 36 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 37 H 0.08 4.62 5.88 -2.39 -0.01 4.61 16 38 H 0.25 14.81 8.32 -92.72 -0.77 14.04 16 39 H 0.08 3.45 8.14 -2.38 -0.02 3.43 16 40 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.10 4.81 6.11 -2.91 -0.02 4.79 16 Total: -1.00 -85.31 364.01 0.17 -85.14 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -1.14 Total: 36.26 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 6.06 Total: 9.74 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -6.66 Total: -115.42 kcal Atomic # 8 Polarization: -60.82 SS G_CDS: -0.12 Total: -60.94 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -85.31 0.17 -85.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907934817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.196 kcal (2) G-P(sol) polarization free energy of solvation -85.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds