Wall clock time and date at job start Tue Mar 31 2020 11:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 119.99924 * 2 1 4 4 N 1.46504 * 109.47298 * 235.00353 * 3 2 1 5 5 C 1.46492 * 120.00368 * 77.28569 * 4 3 2 6 6 C 1.50698 * 109.46975 * 90.00271 * 5 4 3 7 7 H 1.07997 * 120.00448 * 0.02562 * 6 5 4 8 8 C 1.37888 * 119.99949 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99889 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99832 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47243 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47232 * 119.99971 * 10 8 6 13 13 H 1.48499 * 109.46981 * 239.99650 * 10 8 6 14 14 C 1.34780 * 119.99788 * 257.29178 * 4 3 2 15 15 O 1.21549 * 120.00077 * 182.99340 * 14 4 3 16 16 C 1.47856 * 119.99823 * 2.98745 * 14 4 3 17 17 C 1.39620 * 120.11597 * 22.57237 * 16 14 4 18 18 C 1.37974 * 120.00068 * 179.69388 * 17 16 14 19 19 C 1.38257 * 120.21706 * 0.59900 * 18 17 16 20 20 C 1.38945 * 120.22760 * 359.67423 * 19 18 17 21 21 N 1.39969 * 120.00181 * 180.02562 * 20 19 18 22 22 C 1.34777 * 120.00157 * 206.98123 * 21 20 19 23 23 O 1.21586 * 120.00161 * 5.17928 * 22 21 20 24 24 N 1.34776 * 119.99900 * 185.17071 * 22 21 20 25 25 C 1.46504 * 119.99874 * 180.02562 * 24 22 21 26 26 C 1.38634 * 119.99708 * 0.02562 * 20 19 18 27 27 H 1.08008 * 120.00110 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00438 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00023 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47129 * 355.00018 * 3 2 1 31 31 H 1.08998 * 109.47707 * 115.00101 * 3 2 1 32 32 H 1.09000 * 109.47286 * 210.00503 * 5 4 3 33 33 H 1.09003 * 109.47253 * 330.00230 * 5 4 3 34 34 H 0.97001 * 120.00011 * 180.02562 * 9 8 6 35 35 H 1.08006 * 119.99705 * 359.97438 * 17 16 14 36 36 H 1.07991 * 119.89419 * 180.29917 * 18 17 16 37 37 H 1.08005 * 119.89043 * 179.69825 * 19 18 17 38 38 H 0.97003 * 120.00155 * 26.97529 * 21 20 19 39 39 H 0.97001 * 120.00405 * 0.02562 * 24 22 21 40 40 H 1.09002 * 109.46828 * 300.00260 * 25 24 22 41 41 H 1.08997 * 109.47435 * 60.00348 * 25 24 22 42 42 H 1.09000 * 109.47230 * 180.02562 * 25 24 22 43 43 H 1.07998 * 120.10673 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 -1.1315 5 6 2.4955 1.5976 -2.4832 6 6 2.5267 3.0809 -2.7476 7 1 2.8825 3.7580 -1.9852 8 6 2.1010 3.5737 -3.9630 9 7 1.6673 2.7493 -4.8913 10 14 2.1404 5.4122 -4.2910 11 1 2.6665 6.1173 -3.0945 12 1 3.0196 5.6886 -5.4554 13 1 0.7660 5.8924 -4.5835 14 6 4.3079 1.1121 -0.9288 15 8 5.0873 1.1881 -1.8584 16 6 4.8015 0.7787 0.4245 17 6 3.9329 0.2347 1.3727 18 6 4.3976 -0.0814 2.6328 19 6 5.7194 0.1501 2.9653 20 6 6.5905 0.6963 2.0308 21 7 7.9279 0.9282 2.3723 22 6 8.6242 1.8991 1.7486 23 8 8.0663 2.6350 0.9577 24 7 9.9388 2.0544 2.0017 25 6 10.6955 3.1102 1.3241 26 6 6.1349 1.0117 0.7600 27 1 -0.5401 -0.9354 0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1316 -0.0896 31 1 2.6213 1.4027 0.9313 32 1 3.1261 1.0856 -3.2101 33 1 1.4715 1.2344 -2.5710 34 1 1.3682 3.0959 -5.7465 35 1 2.8984 0.0571 1.1183 36 1 3.7254 -0.5066 3.3633 37 1 6.0764 -0.0949 3.9548 38 1 8.3537 0.3902 3.0581 39 1 10.3840 1.4672 2.6325 40 1 10.6514 2.9541 0.2462 41 1 10.2639 4.0807 1.5686 42 1 11.7343 3.0809 1.6529 43 1 6.8105 1.4360 0.0321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908342852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:10 Heat of formation + Delta-G solvation = 31.325670 kcal Electronic energy + Delta-G solvation = -26332.857935 eV Core-core repulsion = 22573.756255 eV Total energy + Delta-G solvation = -3759.101681 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.84217 -39.70122 -37.84698 -35.95955 -34.91875 -34.71654 -33.13640 -32.03452 -30.91674 -29.91204 -27.52649 -26.59565 -25.71408 -23.94752 -22.66255 -22.03991 -20.98086 -20.11134 -19.07790 -18.73505 -17.46093 -16.71031 -16.35745 -15.90055 -15.80677 -15.41000 -15.06864 -14.72518 -14.50242 -14.38470 -14.00981 -13.76310 -13.49946 -13.26507 -13.04413 -12.79750 -12.55367 -12.49287 -12.08330 -11.91558 -11.48607 -11.21131 -11.06099 -10.87148 -10.75003 -10.54584 -10.36228 -10.11522 -10.06120 -9.55447 -9.39963 -9.16154 -8.91788 -8.71850 -8.35441 -7.98453 -7.61171 -5.96138 -3.99772 1.11623 1.46542 2.37879 2.45252 2.93441 3.36501 3.43697 3.46280 3.51165 3.86427 4.04013 4.28132 4.53241 4.87034 4.92672 4.96972 5.17896 5.27731 5.31734 5.33997 5.38371 5.44860 5.50832 5.60636 5.60987 5.69737 5.96540 6.06072 6.10881 6.20211 6.28236 6.38896 6.45875 6.65457 6.70743 6.81708 6.94594 7.07481 7.19988 7.52052 7.62811 7.66452 8.01039 8.32331 8.32903 8.46823 8.98947 9.16081 9.64809 11.12115 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.004126 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.294638 B = 6785.287822 C = 8808.385719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.177 4.177 3 C 0.105 3.895 4 N -0.584 5.584 5 C 0.248 3.752 6 C -0.523 4.523 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.545 3.455 15 O -0.530 6.530 16 C -0.098 4.098 17 C -0.145 4.145 18 C -0.109 4.109 19 C -0.139 4.139 20 C 0.152 3.848 21 N -0.683 5.683 22 C 0.695 3.305 23 O -0.556 6.556 24 N -0.747 5.747 25 C 0.105 3.895 26 C -0.074 4.074 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.165 0.835 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.405 0.595 39 H 0.397 0.603 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.674 -7.613 21.271 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.196 4.196 3 C -0.018 4.018 4 N -0.314 5.314 5 C 0.129 3.871 6 C -0.562 4.562 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.725 3.275 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.210 1.210 14 C 0.332 3.668 15 O -0.407 6.407 16 C -0.102 4.102 17 C -0.163 4.163 18 C -0.128 4.128 19 C -0.160 4.160 20 C 0.057 3.943 21 N -0.330 5.330 22 C 0.396 3.604 23 O -0.431 6.431 24 N -0.403 5.403 25 C -0.040 4.040 26 C -0.095 4.095 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.182 0.818 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.240 0.760 39 H 0.230 0.770 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.590 -6.813 19.777 23.445 hybrid contribution 0.446 0.455 0.434 0.771 sum 11.036 -6.357 20.211 23.889 Atomic orbital electron populations 1.23853 0.95755 1.01895 0.99364 1.23327 0.96406 0.99020 1.00891 1.21444 0.93646 0.95220 0.91506 1.48084 1.05310 1.67872 1.10136 1.19291 0.94872 0.96563 0.76369 1.21497 1.42489 0.92216 0.99994 0.92321 1.24919 0.95211 0.98142 0.95800 1.69945 1.43577 1.34333 1.05653 0.86455 0.77435 0.85265 0.78381 1.19745 1.20884 1.21030 1.18173 0.82817 0.78373 0.87483 1.90756 1.54769 1.51596 1.43610 1.20171 0.94047 1.00856 0.95089 1.22643 1.01771 0.98504 0.93392 1.20853 0.94677 1.00398 0.96848 1.20854 0.93532 1.03648 0.97997 1.17366 0.82771 1.00676 0.93445 1.42514 1.10923 1.37004 1.42573 1.16021 0.81742 0.81101 0.81573 1.91042 1.68463 1.46159 1.37432 1.44908 1.07946 1.38267 1.49192 1.21460 0.94524 0.90057 0.97930 1.21459 0.95586 0.97567 0.94914 0.88596 0.88157 0.87187 0.90010 0.87736 0.93880 0.94690 0.92870 0.81789 0.85308 0.85868 0.76005 0.77003 0.91892 0.92076 0.90538 0.82806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 14.32 29.02 0.42 -1.84 16 2 C -0.18 -2.61 8.03 -36.03 -0.29 -2.90 16 3 C 0.11 1.84 5.32 -5.19 -0.03 1.81 16 4 N -0.58 -13.35 2.47 -177.55 -0.44 -13.79 16 5 C 0.25 6.81 5.10 -5.20 -0.03 6.78 16 6 C -0.52 -15.59 9.39 -34.44 -0.32 -15.91 16 7 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 10 Si 0.90 22.85 29.54 -169.99 -5.02 17.82 16 11 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.54 12.85 7.52 -12.32 -0.09 12.76 16 15 O -0.53 -14.86 16.18 5.32 0.09 -14.78 16 16 C -0.10 -1.83 5.61 -104.99 -0.59 -2.42 16 17 C -0.14 -2.09 7.52 -39.16 -0.29 -2.38 16 18 C -0.11 -1.23 10.02 -39.67 -0.40 -1.63 16 19 C -0.14 -1.51 9.94 -39.31 -0.39 -1.90 16 20 C 0.15 2.09 6.39 -83.73 -0.54 1.55 16 21 N -0.68 -7.28 5.37 -14.26 -0.08 -7.35 16 22 C 0.70 9.09 8.35 -86.92 -0.73 8.36 16 23 O -0.56 -10.41 13.61 5.29 0.07 -10.34 16 24 N -0.75 -6.31 5.72 -72.07 -0.41 -6.72 16 25 C 0.10 0.83 10.70 59.85 0.64 1.47 16 26 C -0.07 -1.36 8.23 -38.98 -0.32 -1.68 16 27 H 0.10 1.07 8.06 -52.48 -0.42 0.65 16 28 H 0.10 1.32 7.84 -52.49 -0.41 0.90 16 29 H 0.11 1.52 7.53 -52.49 -0.40 1.12 16 30 H 0.08 1.47 7.79 -51.93 -0.40 1.07 16 31 H 0.11 1.61 4.15 -52.00 -0.22 1.40 16 32 H 0.04 1.33 7.46 -51.93 -0.39 0.94 16 33 H 0.04 0.96 7.98 -51.93 -0.41 0.55 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.17 2.20 2.43 -52.48 -0.13 2.08 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.41 2.45 8.81 -40.82 -0.36 2.09 16 39 H 0.40 1.76 8.85 -40.82 -0.36 1.40 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.15 3.32 5.69 -52.49 -0.30 3.02 16 LS Contribution 362.65 15.07 5.47 5.47 Total: -1.00 -39.34 362.65 -8.10 -47.44 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.46 Total: 5.17 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -3.05 Total: 3.78 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.19 Total: -54.57 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.16 Total: -25.11 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -39.34 -8.10 -47.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908342852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.768 kcal (2) G-P(sol) polarization free energy of solvation -39.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds