Wall clock time and date at job start Tue Mar 31 2020 11:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 119.99924 * 2 1 4 4 N 1.46504 * 109.47298 * 235.00353 * 3 2 1 5 5 C 1.46492 * 120.00368 * 77.28569 * 4 3 2 6 6 C 1.50698 * 109.46975 * 90.00271 * 5 4 3 7 7 H 1.07997 * 120.00448 * 0.02562 * 6 5 4 8 8 C 1.37888 * 119.99949 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99889 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99832 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47243 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47232 * 119.99971 * 10 8 6 13 13 H 1.48499 * 109.46981 * 239.99650 * 10 8 6 14 14 C 1.34780 * 119.99788 * 257.29178 * 4 3 2 15 15 O 1.21549 * 120.00077 * 182.99340 * 14 4 3 16 16 C 1.47856 * 119.99823 * 2.98745 * 14 4 3 17 17 C 1.39620 * 120.11597 * 22.57237 * 16 14 4 18 18 C 1.37974 * 120.00068 * 179.69388 * 17 16 14 19 19 C 1.38257 * 120.21706 * 0.59900 * 18 17 16 20 20 C 1.38945 * 120.22760 * 359.67423 * 19 18 17 21 21 N 1.39969 * 120.00181 * 180.02562 * 20 19 18 22 22 C 1.34777 * 120.00157 * 206.98123 * 21 20 19 23 23 O 1.21586 * 120.00161 * 5.17928 * 22 21 20 24 24 N 1.34776 * 119.99900 * 185.17071 * 22 21 20 25 25 C 1.46504 * 119.99874 * 180.02562 * 24 22 21 26 26 C 1.38634 * 119.99708 * 0.02562 * 20 19 18 27 27 H 1.08008 * 120.00110 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00438 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00023 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47129 * 355.00018 * 3 2 1 31 31 H 1.08998 * 109.47707 * 115.00101 * 3 2 1 32 32 H 1.09000 * 109.47286 * 210.00503 * 5 4 3 33 33 H 1.09003 * 109.47253 * 330.00230 * 5 4 3 34 34 H 0.97001 * 120.00011 * 180.02562 * 9 8 6 35 35 H 1.08006 * 119.99705 * 359.97438 * 17 16 14 36 36 H 1.07991 * 119.89419 * 180.29917 * 18 17 16 37 37 H 1.08005 * 119.89043 * 179.69825 * 19 18 17 38 38 H 0.97003 * 120.00155 * 26.97529 * 21 20 19 39 39 H 0.97001 * 120.00405 * 0.02562 * 24 22 21 40 40 H 1.09002 * 109.46828 * 300.00260 * 25 24 22 41 41 H 1.08997 * 109.47435 * 60.00348 * 25 24 22 42 42 H 1.09000 * 109.47230 * 180.02562 * 25 24 22 43 43 H 1.07998 * 120.10673 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 -1.1315 5 6 2.4955 1.5976 -2.4832 6 6 2.5267 3.0809 -2.7476 7 1 2.8825 3.7580 -1.9852 8 6 2.1010 3.5737 -3.9630 9 7 1.6673 2.7493 -4.8913 10 14 2.1404 5.4122 -4.2910 11 1 2.6665 6.1173 -3.0945 12 1 3.0196 5.6886 -5.4554 13 1 0.7660 5.8924 -4.5835 14 6 4.3079 1.1121 -0.9288 15 8 5.0873 1.1881 -1.8584 16 6 4.8015 0.7787 0.4245 17 6 3.9329 0.2347 1.3727 18 6 4.3976 -0.0814 2.6328 19 6 5.7194 0.1501 2.9653 20 6 6.5905 0.6963 2.0308 21 7 7.9279 0.9282 2.3723 22 6 8.6242 1.8991 1.7486 23 8 8.0663 2.6350 0.9577 24 7 9.9388 2.0544 2.0017 25 6 10.6955 3.1102 1.3241 26 6 6.1349 1.0117 0.7600 27 1 -0.5401 -0.9354 0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1316 -0.0896 31 1 2.6213 1.4027 0.9313 32 1 3.1261 1.0856 -3.2101 33 1 1.4715 1.2344 -2.5710 34 1 1.3682 3.0959 -5.7465 35 1 2.8984 0.0571 1.1183 36 1 3.7254 -0.5066 3.3633 37 1 6.0764 -0.0949 3.9548 38 1 8.3537 0.3902 3.0581 39 1 10.3840 1.4672 2.6325 40 1 10.6514 2.9541 0.2462 41 1 10.2639 4.0807 1.5686 42 1 11.7343 3.0809 1.6529 43 1 6.8105 1.4360 0.0321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908342852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:09 Heat of formation + Delta-G solvation = 0.679175 kcal Electronic energy + Delta-G solvation = -26334.186867 eV Core-core repulsion = 22573.756255 eV Total energy + Delta-G solvation = -3760.430612 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.96767 -41.12795 -39.17372 -37.60078 -35.97093 -35.78261 -35.09989 -33.74579 -32.19512 -31.06653 -29.39320 -27.57618 -27.11687 -25.73795 -23.85127 -23.57693 -21.98340 -21.45845 -20.43868 -19.69526 -18.88428 -18.60527 -17.93151 -17.19091 -17.08860 -16.81790 -16.38286 -16.05711 -16.02785 -15.70918 -15.38061 -15.00249 -14.73404 -14.48849 -14.42996 -14.23211 -14.13673 -13.63950 -13.35035 -13.16982 -13.09911 -12.97788 -12.65983 -12.63683 -12.33706 -12.26507 -11.99274 -11.74301 -11.54580 -11.23852 -10.69419 -10.68024 -10.36564 -10.24942 -9.95952 -9.51620 -9.02955 -8.26459 -6.40923 -0.07737 0.34452 1.28294 1.31266 1.34588 1.46885 1.52223 1.81168 2.03810 2.31261 2.42775 2.91402 3.02546 3.18804 3.59310 3.98550 4.03219 4.13902 4.18476 4.30420 4.37460 4.40378 4.47744 4.53430 4.59459 4.83505 4.86082 4.94175 5.00166 5.06735 5.15232 5.22243 5.30611 5.35642 5.44789 5.45907 5.51618 5.69389 5.72610 5.91124 5.93924 6.00446 6.02622 6.63164 6.69108 6.95016 7.21707 7.37721 7.42311 8.81169 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.004126 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.294638 B = 6785.287822 C = 8808.385719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.195 4.195 3 C 0.101 3.899 4 N -0.587 5.587 5 C 0.266 3.734 6 C -0.547 4.547 7 H 0.045 0.955 8 C 0.011 3.989 9 N -0.924 5.924 10 Si 0.967 3.033 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.260 1.260 14 C 0.532 3.468 15 O -0.599 6.599 16 C -0.128 4.128 17 C -0.143 4.143 18 C -0.090 4.090 19 C -0.109 4.109 20 C 0.151 3.849 21 N -0.664 5.664 22 C 0.685 3.315 23 O -0.621 6.621 24 N -0.725 5.725 25 C 0.101 3.899 26 C -0.106 4.106 27 H 0.125 0.875 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.071 0.929 31 H 0.129 0.871 32 H -0.006 1.006 33 H 0.032 0.968 34 H 0.269 0.731 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.180 0.820 38 H 0.431 0.569 39 H 0.421 0.579 40 H 0.038 0.962 41 H 0.046 0.954 42 H 0.124 0.876 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.283 -8.676 25.908 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.214 4.214 3 C -0.020 4.020 4 N -0.316 5.316 5 C 0.145 3.855 6 C -0.585 4.585 7 H 0.063 0.937 8 C -0.188 4.188 9 N -0.564 5.564 10 Si 0.791 3.209 11 H -0.198 1.198 12 H -0.205 1.205 13 H -0.185 1.185 14 C 0.322 3.678 15 O -0.482 6.482 16 C -0.131 4.131 17 C -0.161 4.161 18 C -0.108 4.108 19 C -0.130 4.130 20 C 0.055 3.945 21 N -0.313 5.313 22 C 0.385 3.615 23 O -0.501 6.501 24 N -0.382 5.382 25 C -0.043 4.043 26 C -0.128 4.128 27 H 0.143 0.857 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.012 0.988 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.192 0.808 36 H 0.199 0.801 37 H 0.197 0.803 38 H 0.271 0.729 39 H 0.258 0.742 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.142 0.858 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.214 -7.932 24.519 27.720 hybrid contribution 0.607 0.728 -0.929 1.327 sum 10.821 -7.204 23.590 26.935 Atomic orbital electron populations 1.24118 0.95184 1.03251 0.96214 1.23148 0.96869 0.97766 1.03644 1.21771 0.92956 0.96855 0.90391 1.48075 1.06293 1.67335 1.09902 1.18719 0.93414 0.94989 0.78345 1.21702 1.43250 0.93159 1.00440 0.93685 1.25823 0.94377 1.03314 0.95284 1.70046 1.43686 1.36554 1.06121 0.85386 0.78524 0.79030 0.77969 1.19834 1.20531 1.18508 1.19135 0.82365 0.77032 0.89247 1.90686 1.56416 1.54781 1.46281 1.19776 0.95232 1.04833 0.93304 1.22736 1.01499 0.97926 0.93925 1.21440 0.95580 0.97969 0.95768 1.21454 0.92596 0.99860 0.99095 1.17480 0.84485 1.00316 0.92184 1.42266 1.09947 1.36517 1.42601 1.16413 0.82972 0.81022 0.81070 1.91027 1.70100 1.48736 1.40221 1.44753 1.06292 1.38308 1.48857 1.21590 0.96778 0.89205 0.96754 1.21188 0.94994 1.00015 0.96599 0.85727 0.88241 0.86012 0.91031 0.85363 0.98775 0.95008 0.92230 0.80843 0.80066 0.80289 0.72869 0.74182 0.94277 0.93487 0.85815 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 14.32 67.78 0.97 -2.67 16 2 C -0.20 -5.55 8.03 25.65 0.21 -5.34 16 3 C 0.10 3.61 5.32 85.63 0.46 4.07 16 4 N -0.59 -28.82 2.47 -833.93 -2.06 -30.88 16 5 C 0.27 15.77 5.10 85.63 0.44 16.21 16 6 C -0.55 -34.59 9.39 25.60 0.24 -34.35 16 7 H 0.04 2.89 7.81 -2.91 -0.02 2.87 16 8 C 0.01 0.69 5.46 84.66 0.46 1.15 16 9 N -0.92 -58.63 13.29 21.45 0.28 -58.35 16 10 Si 0.97 48.24 29.54 68.60 2.03 50.27 16 11 H -0.27 -13.58 7.11 99.48 0.71 -12.88 16 12 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 14 C 0.53 27.49 7.52 86.79 0.65 28.14 16 15 O -0.60 -37.66 16.18 -3.87 -0.06 -37.72 16 16 C -0.13 -5.04 5.61 -20.10 -0.11 -5.15 16 17 C -0.14 -3.86 7.52 22.54 0.17 -3.69 16 18 C -0.09 -1.54 10.02 22.21 0.22 -1.32 16 19 C -0.11 -1.80 9.94 22.44 0.22 -1.58 16 20 C 0.15 3.92 6.39 38.11 0.24 4.16 16 21 N -0.66 -12.95 5.37 -317.28 -1.70 -14.65 16 22 C 0.69 18.13 8.35 179.05 1.50 19.63 16 23 O -0.62 -25.19 13.61 -3.99 -0.05 -25.25 16 24 N -0.73 -11.46 5.72 -500.18 -2.86 -14.32 16 25 C 0.10 1.57 10.70 127.77 1.37 2.94 16 26 C -0.11 -4.13 8.23 22.66 0.19 -3.95 16 27 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.10 2.44 7.84 -2.91 -0.02 2.42 16 29 H 0.12 3.19 7.53 -2.91 -0.02 3.17 16 30 H 0.07 2.65 7.79 -2.39 -0.02 2.63 16 31 H 0.13 3.91 4.15 -2.46 -0.01 3.90 16 32 H -0.01 -0.40 7.46 -2.39 -0.02 -0.42 16 33 H 0.03 1.87 7.98 -2.39 -0.02 1.85 16 34 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 35 H 0.17 4.33 2.43 -2.91 -0.01 4.32 16 36 H 0.18 1.41 8.06 -2.92 -0.02 1.38 16 37 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.43 3.51 8.81 -92.71 -0.82 2.70 16 39 H 0.42 2.52 8.85 -92.71 -0.82 1.70 16 40 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 5.13 5.69 -2.91 -0.02 5.11 16 Total: -1.00 -99.65 362.65 2.22 -97.43 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -0.57 Total: 15.23 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 7.22 Total: 18.24 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -6.34 Total: -118.20 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: -0.12 Total: -62.97 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -99.65 2.22 -97.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908342852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.113 kcal (2) G-P(sol) polarization free energy of solvation -99.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds