Wall clock time and date at job start Tue Mar 31 2020 11:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00065 * 2 1 4 4 C 1.46901 * 110.99841 * 123.95215 * 2 1 3 5 5 C 1.47200 * 109.47127 * 66.04569 * 4 2 1 6 6 C 3.42790 * 88.27643 * 165.66227 * 2 1 3 7 7 C 4.81133 * 84.59461 * 171.74676 * 2 1 3 8 8 N 1.46497 * 109.46924 * 107.81669 * 7 6 5 9 9 C 1.34784 * 119.99660 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00109 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.39939 * 119.99758 * 174.73723 * 11 9 8 13 13 C 1.38956 * 120.03570 * 326.32472 * 12 11 9 14 14 C 1.38156 * 120.07081 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.13567 * 359.72119 * 14 13 12 16 16 C 1.38905 * 120.06692 * 0.55652 * 15 14 13 17 17 O 1.35755 * 120.03289 * 179.72231 * 16 15 14 18 18 C 1.34825 * 117.00011 * 173.82163 * 17 16 15 19 19 H 1.07996 * 119.99945 * 354.59785 * 18 17 16 20 20 C 1.38654 * 119.99933 * 174.60004 * 18 17 16 21 21 N 1.31562 * 119.99967 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99998 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47088 * 89.99781 * 22 20 18 24 24 H 1.48497 * 109.46655 * 209.99962 * 22 20 18 25 25 H 1.48498 * 109.46856 * 329.99802 * 22 20 18 26 26 C 1.38708 * 120.03895 * 146.35779 * 12 11 9 27 27 H 1.09005 * 109.46998 * 296.04916 * 1 2 3 28 28 H 1.09004 * 109.46926 * 56.04503 * 1 2 3 29 29 H 1.08997 * 109.47356 * 176.05005 * 1 2 3 30 30 H 1.08997 * 109.47483 * 183.94989 * 3 2 1 31 31 H 1.08998 * 109.46944 * 303.95211 * 3 2 1 32 32 H 1.09004 * 109.47099 * 63.95054 * 3 2 1 33 33 H 1.09003 * 109.47194 * 306.04472 * 4 2 1 34 34 H 1.09007 * 109.46873 * 186.04867 * 4 2 1 35 35 H 1.09001 * 109.46975 * 347.81354 * 7 6 5 36 36 H 1.09001 * 109.46709 * 227.81212 * 7 6 5 37 37 H 0.96996 * 120.00079 * 359.97438 * 8 7 6 38 38 H 0.96996 * 119.99805 * 354.72075 * 11 9 8 39 39 H 1.08002 * 119.96782 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.93391 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.96247 * 180.28112 * 15 14 13 42 42 H 0.97000 * 120.00104 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.06084 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6452 -2.1866 0.9768 6 6 1.3659 -3.3196 0.8485 7 6 1.0157 -4.7403 0.6876 8 7 1.3443 -5.1731 -0.6729 9 6 1.1079 -6.4451 -1.0509 10 8 0.6224 -7.2334 -0.2627 11 7 1.4107 -6.8435 -2.3024 12 6 1.2688 -8.1884 -2.6621 13 6 1.5088 -9.1876 -1.7268 14 6 1.3694 -10.5156 -2.0813 15 6 0.9856 -10.8544 -3.3647 16 6 0.7499 -9.8604 -4.3058 17 8 0.3782 -10.1942 -5.5681 18 6 0.0413 -9.1836 -6.3945 19 1 -0.0099 -8.1726 -6.0182 20 6 -0.2395 -9.4423 -7.7274 21 7 -0.1766 -10.6738 -8.1859 22 14 -0.7070 -8.0421 -8.8723 23 1 0.5188 -7.4827 -9.4964 24 1 -1.6141 -8.5513 -9.9320 25 1 -1.3975 -6.9795 -8.0982 26 6 0.8891 -8.5255 -3.9529 27 1 -0.3633 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 -1.0252 -0.0708 30 1 3.0827 1.3433 -0.0708 31 1 1.5898 1.9163 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 1.5610 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1757 35 1 -0.0517 -4.8736 0.8635 36 1 1.5795 -5.3369 1.4048 37 1 1.7313 -4.5442 -1.3018 38 1 1.7267 -6.1979 -2.9537 39 1 1.8046 -8.9258 -0.7216 40 1 1.5561 -11.2904 -1.3524 41 1 0.8731 -11.8933 -3.6375 42 1 -0.3727 -10.8547 -9.1185 43 1 0.7022 -7.7507 -4.6817 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929743073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:41 Heat of formation + Delta-G solvation = 38.708539 kcal Electronic energy + Delta-G solvation = -24397.470294 eV Core-core repulsion = 20638.688759 eV Total energy + Delta-G solvation = -3758.781535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.35972 -38.75606 -38.12178 -36.69834 -35.41127 -34.19705 -33.02643 -32.19347 -29.69382 -28.94453 -28.22368 -28.05712 -26.10869 -25.23463 -22.64478 -22.12512 -21.75907 -20.46340 -18.89120 -17.87281 -17.72305 -16.94654 -16.12250 -16.02021 -15.88342 -15.66959 -15.06710 -14.93971 -14.84870 -14.35233 -14.04332 -13.95732 -13.73799 -13.49930 -13.44376 -13.12339 -12.93016 -12.64535 -12.40787 -12.32155 -12.13950 -11.72001 -11.56420 -11.12478 -11.01066 -10.75860 -10.70022 -10.41490 -10.39183 -10.02928 -9.60961 -9.45047 -9.18930 -8.95140 -8.77393 -7.67115 -7.10092 -6.42131 -4.01621 1.86465 2.11441 2.24702 2.44522 2.96479 3.13263 3.14246 3.19150 3.31266 3.51101 3.79765 3.98323 4.28594 4.61488 4.64572 4.69311 4.85872 4.89396 5.08191 5.13094 5.13566 5.19245 5.31712 5.32449 5.36069 5.37886 5.49656 5.73487 6.04452 6.12229 6.20916 6.29408 6.31657 6.37484 6.42245 6.58404 6.82278 7.04249 7.14043 7.17425 7.30110 7.37271 7.46769 7.86483 8.00800 8.03182 8.61335 9.03426 9.74486 10.76010 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.002396 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.648271 B =11681.427661 C =13771.457168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.546 5.546 3 C 0.024 3.976 4 C 0.165 3.835 5 C -0.150 4.150 6 C -0.185 4.185 7 C 0.256 3.744 8 N -0.746 5.746 9 C 0.706 3.294 10 O -0.570 6.570 11 N -0.680 5.680 12 C 0.198 3.802 13 C -0.205 4.205 14 C -0.063 4.063 15 C -0.202 4.202 16 C 0.169 3.831 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.090 0.910 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.257 4.257 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.400 0.600 38 H 0.403 0.597 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.269 0.731 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.783 21.272 16.469 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.270 5.270 3 C -0.124 4.124 4 C 0.039 3.961 5 C -0.152 4.152 6 C -0.186 4.186 7 C 0.133 3.867 8 N -0.403 5.403 9 C 0.406 3.594 10 O -0.446 6.446 11 N -0.327 5.327 12 C 0.105 3.895 13 C -0.226 4.226 14 C -0.082 4.082 15 C -0.222 4.222 16 C 0.115 3.885 17 O -0.080 6.080 18 C -0.467 4.467 19 H 0.107 0.893 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.764 3.236 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.279 4.279 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.234 0.766 38 H 0.238 0.762 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.428 20.025 16.461 26.298 hybrid contribution -0.195 1.923 -0.501 1.996 sum 4.234 21.948 15.960 27.466 Atomic orbital electron populations 1.22452 0.86599 1.02883 1.00721 1.61938 1.08764 1.14078 1.42194 1.22413 1.01056 0.87941 1.00987 1.19037 1.00739 0.84000 0.92374 1.21989 1.01031 0.93577 0.98637 1.22135 1.00644 0.93815 1.02037 1.17826 1.01366 0.83937 0.83541 1.45063 1.69760 1.10975 1.14472 1.15805 0.79020 0.81947 0.82585 1.90961 1.48932 1.52505 1.52156 1.42559 1.69272 1.09247 1.11616 1.17173 0.97680 0.81084 0.93577 1.20566 1.10623 0.91777 0.99597 1.20526 0.97522 0.95276 0.94863 1.20241 1.10795 0.98335 0.92797 1.19064 0.91388 0.91574 0.86509 1.84019 1.72564 1.34978 1.16482 1.21262 1.47126 0.88221 0.90087 0.89288 1.25270 0.96999 0.97820 0.96438 1.70039 1.45389 1.18659 1.15704 0.85736 0.78626 0.79680 0.79522 1.19935 1.20276 1.19279 1.20783 1.13525 0.97217 0.96399 0.95336 0.90972 0.91015 0.90937 0.90801 0.95300 0.92114 0.88191 0.89070 0.89013 0.76578 0.76197 0.86196 0.86630 0.86412 0.92069 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.36 60.06 0.56 0.71 16 2 N -0.55 -3.88 5.00 -254.81 -1.27 -5.15 16 3 C 0.02 0.11 9.57 60.07 0.57 0.69 16 4 C 0.16 1.08 5.46 -6.61 -0.04 1.04 16 5 C -0.15 -1.34 12.44 -37.12 -0.46 -1.80 16 6 C -0.18 -1.76 13.46 -37.12 -0.50 -2.26 16 7 C 0.26 2.58 6.15 -6.83 -0.04 2.53 16 8 N -0.75 -8.36 5.54 -68.12 -0.38 -8.73 16 9 C 0.71 10.83 8.30 -86.91 -0.72 10.11 16 10 O -0.57 -10.78 14.05 5.29 0.07 -10.71 16 11 N -0.68 -10.55 5.35 -14.24 -0.08 -10.63 16 12 C 0.20 3.88 6.27 -83.72 -0.52 3.35 16 13 C -0.20 -4.01 8.65 -39.35 -0.34 -4.35 16 14 C -0.06 -1.21 10.03 -39.63 -0.40 -1.61 16 15 C -0.20 -4.39 9.99 -39.36 -0.39 -4.79 16 16 C 0.17 4.14 6.64 -39.14 -0.26 3.88 16 17 O -0.18 -5.07 9.76 0.05 0.00 -5.07 16 18 C -0.39 -10.89 9.44 30.89 0.29 -10.60 16 19 H 0.09 2.29 5.30 -52.49 -0.28 2.02 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 22 Si 0.94 20.47 29.55 -169.99 -5.02 15.44 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 C -0.26 -5.64 9.04 -39.21 -0.35 -6.00 16 27 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.07 0.57 7.29 -51.93 -0.38 0.19 16 30 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 31 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.03 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 34 H 0.10 0.52 8.06 -51.93 -0.42 0.10 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.40 3.65 8.47 -40.82 -0.35 3.30 16 38 H 0.40 4.95 8.83 -40.82 -0.36 4.59 16 39 H 0.12 2.31 6.43 -52.49 -0.34 1.97 16 40 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 41 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 43 H 0.13 2.77 5.72 -52.48 -0.30 2.47 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -34.19 374.11 -8.76 -42.95 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.78 Total: 8.96 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.70 Total: -8.13 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.97 Total: -49.09 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.07 Total: -15.77 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.19 -8.76 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929743073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.657 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds