Wall clock time and date at job start Tue Mar 31 2020 11:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00065 * 2 1 4 4 C 1.46901 * 110.99841 * 123.95215 * 2 1 3 5 5 C 1.47200 * 109.47127 * 66.04569 * 4 2 1 6 6 C 3.42790 * 88.27643 * 165.66227 * 2 1 3 7 7 C 4.81133 * 84.59461 * 171.74676 * 2 1 3 8 8 N 1.46497 * 109.46924 * 107.81669 * 7 6 5 9 9 C 1.34784 * 119.99660 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00109 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.39939 * 119.99758 * 174.73723 * 11 9 8 13 13 C 1.38956 * 120.03570 * 326.32472 * 12 11 9 14 14 C 1.38156 * 120.07081 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.13567 * 359.72119 * 14 13 12 16 16 C 1.38905 * 120.06692 * 0.55652 * 15 14 13 17 17 O 1.35755 * 120.03289 * 179.72231 * 16 15 14 18 18 C 1.34825 * 117.00011 * 173.82163 * 17 16 15 19 19 H 1.07996 * 119.99945 * 354.59785 * 18 17 16 20 20 C 1.38654 * 119.99933 * 174.60004 * 18 17 16 21 21 N 1.31562 * 119.99967 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99998 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47088 * 89.99781 * 22 20 18 24 24 H 1.48497 * 109.46655 * 209.99962 * 22 20 18 25 25 H 1.48498 * 109.46856 * 329.99802 * 22 20 18 26 26 C 1.38708 * 120.03895 * 146.35779 * 12 11 9 27 27 H 1.09005 * 109.46998 * 296.04916 * 1 2 3 28 28 H 1.09004 * 109.46926 * 56.04503 * 1 2 3 29 29 H 1.08997 * 109.47356 * 176.05005 * 1 2 3 30 30 H 1.08997 * 109.47483 * 183.94989 * 3 2 1 31 31 H 1.08998 * 109.46944 * 303.95211 * 3 2 1 32 32 H 1.09004 * 109.47099 * 63.95054 * 3 2 1 33 33 H 1.09003 * 109.47194 * 306.04472 * 4 2 1 34 34 H 1.09007 * 109.46873 * 186.04867 * 4 2 1 35 35 H 1.09001 * 109.46975 * 347.81354 * 7 6 5 36 36 H 1.09001 * 109.46709 * 227.81212 * 7 6 5 37 37 H 0.96996 * 120.00079 * 359.97438 * 8 7 6 38 38 H 0.96996 * 119.99805 * 354.72075 * 11 9 8 39 39 H 1.08002 * 119.96782 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.93391 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.96247 * 180.28112 * 15 14 13 42 42 H 0.97000 * 120.00104 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.06084 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6452 -2.1866 0.9768 6 6 1.3659 -3.3196 0.8485 7 6 1.0157 -4.7403 0.6876 8 7 1.3443 -5.1731 -0.6729 9 6 1.1079 -6.4451 -1.0509 10 8 0.6224 -7.2334 -0.2627 11 7 1.4107 -6.8435 -2.3024 12 6 1.2688 -8.1884 -2.6621 13 6 1.5088 -9.1876 -1.7268 14 6 1.3694 -10.5156 -2.0813 15 6 0.9856 -10.8544 -3.3647 16 6 0.7499 -9.8604 -4.3058 17 8 0.3782 -10.1942 -5.5681 18 6 0.0413 -9.1836 -6.3945 19 1 -0.0099 -8.1726 -6.0182 20 6 -0.2395 -9.4423 -7.7274 21 7 -0.1766 -10.6738 -8.1859 22 14 -0.7070 -8.0421 -8.8723 23 1 0.5188 -7.4827 -9.4964 24 1 -1.6141 -8.5513 -9.9320 25 1 -1.3975 -6.9795 -8.0982 26 6 0.8891 -8.5255 -3.9529 27 1 -0.3633 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 -1.0252 -0.0708 30 1 3.0827 1.3433 -0.0708 31 1 1.5898 1.9163 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 1.5610 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1757 35 1 -0.0517 -4.8736 0.8635 36 1 1.5795 -5.3369 1.4048 37 1 1.7313 -4.5442 -1.3018 38 1 1.7267 -6.1979 -2.9537 39 1 1.8046 -8.9258 -0.7216 40 1 1.5561 -11.2904 -1.3524 41 1 0.8731 -11.8933 -3.6375 42 1 -0.3727 -10.8547 -9.1185 43 1 0.7022 -7.7507 -4.6817 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929743073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:40 Heat of formation + Delta-G solvation = 14.078344 kcal Electronic energy + Delta-G solvation = -24398.538340 eV Core-core repulsion = 20638.688759 eV Total energy + Delta-G solvation = -3759.849581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.71286 -40.46082 -38.62836 -38.31328 -36.49164 -35.65363 -34.23130 -33.79830 -31.08483 -30.38914 -29.34510 -28.50054 -27.33110 -26.81429 -23.65477 -23.46247 -23.03573 -21.85408 -20.27635 -19.41791 -19.32549 -18.01969 -17.25415 -17.02015 -16.67632 -16.46119 -16.45147 -16.26126 -16.08403 -15.75340 -15.66922 -15.44898 -14.87539 -14.80401 -14.54006 -14.13046 -14.01449 -13.66072 -13.54189 -13.24463 -13.07270 -12.84308 -12.75927 -12.67658 -12.58899 -12.39160 -12.10186 -11.66007 -11.43003 -11.25093 -11.20136 -11.00023 -10.70826 -10.17644 -9.41019 -9.31184 -8.82326 -8.44504 -6.12961 0.46434 0.73272 1.04066 1.37020 1.46244 1.54339 1.55053 1.94559 2.02006 2.19545 2.86780 2.92965 3.12841 3.20392 3.30810 3.52379 4.13748 4.18575 4.21702 4.35697 4.39334 4.46557 4.46927 4.49221 4.53577 4.63668 4.66422 4.71897 4.74463 4.75741 4.98183 5.04797 5.04859 5.13170 5.23553 5.36241 5.49592 5.70013 5.71319 5.91102 5.91878 5.99073 6.04008 6.22859 6.48072 6.87367 6.99974 7.38476 7.80057 8.78508 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.002396 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.648271 B =11681.427661 C =13771.457168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.564 5.564 3 C 0.024 3.976 4 C 0.161 3.839 5 C -0.141 4.141 6 C -0.208 4.208 7 C 0.259 3.741 8 N -0.726 5.726 9 C 0.707 3.293 10 O -0.605 6.605 11 N -0.673 5.673 12 C 0.206 3.794 13 C -0.199 4.199 14 C -0.051 4.051 15 C -0.215 4.215 16 C 0.135 3.865 17 O -0.226 6.226 18 C -0.411 4.411 19 H 0.101 0.899 20 C -0.023 4.023 21 N -0.919 5.919 22 Si 1.018 2.982 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.254 1.254 26 C -0.261 4.261 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.413 0.587 38 H 0.420 0.580 39 H 0.132 0.868 40 H 0.155 0.845 41 H 0.120 0.880 42 H 0.272 0.728 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.481 24.205 18.041 30.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.288 5.288 3 C -0.123 4.123 4 C 0.034 3.966 5 C -0.143 4.143 6 C -0.210 4.210 7 C 0.136 3.864 8 N -0.383 5.383 9 C 0.407 3.593 10 O -0.484 6.484 11 N -0.321 5.321 12 C 0.110 3.890 13 C -0.220 4.220 14 C -0.069 4.069 15 C -0.235 4.235 16 C 0.083 3.917 17 O -0.133 6.133 18 C -0.487 4.487 19 H 0.119 0.881 20 C -0.220 4.220 21 N -0.557 5.557 22 Si 0.837 3.163 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.178 1.178 26 C -0.283 4.283 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.249 0.751 38 H 0.257 0.743 39 H 0.150 0.850 40 H 0.172 0.828 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.163 23.039 18.082 29.739 hybrid contribution -0.319 1.098 -0.672 1.326 sum 4.844 24.137 17.410 30.153 Atomic orbital electron populations 1.22421 0.86764 1.01986 1.01390 1.61935 1.08845 1.15425 1.42615 1.22455 1.01486 0.86815 1.01585 1.19244 1.01818 0.82604 0.92898 1.22607 1.00033 0.94212 0.97418 1.22029 1.01776 0.93891 1.03267 1.17823 1.01380 0.84526 0.82632 1.44925 1.68430 1.09638 1.15271 1.15869 0.78676 0.82785 0.81928 1.90937 1.50572 1.53862 1.53004 1.42413 1.69137 1.08135 1.12393 1.17175 0.96184 0.83054 0.92542 1.20880 1.09163 0.91978 0.99932 1.20920 0.95401 0.96308 0.94281 1.20478 1.11310 0.98158 0.93517 1.19586 0.92696 0.93467 0.85903 1.83984 1.74981 1.36057 1.18247 1.21770 1.47507 0.88768 0.90694 0.88143 1.26577 0.96648 1.00863 0.97939 1.70187 1.47847 1.21367 1.16334 0.84595 0.78723 0.76077 0.76869 1.18604 1.19812 1.17767 1.20798 1.13715 0.96279 0.97501 0.94505 0.90548 0.92620 0.90152 0.90635 0.94319 0.90640 0.86583 0.89253 0.88640 0.75106 0.74283 0.85047 0.82768 0.86242 0.91864 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.36 127.69 1.20 1.46 16 2 N -0.56 -6.79 5.00 -960.07 -4.80 -11.59 16 3 C 0.02 0.17 9.57 127.69 1.22 1.39 16 4 C 0.16 1.70 5.46 84.50 0.46 2.16 16 5 C -0.14 -2.22 12.44 31.13 0.39 -1.84 16 6 C -0.21 -3.61 13.46 31.13 0.42 -3.19 16 7 C 0.26 4.79 6.15 84.57 0.52 5.31 16 8 N -0.73 -14.79 5.54 -487.67 -2.70 -17.49 16 9 C 0.71 20.32 8.30 179.05 1.49 21.80 16 10 O -0.60 -21.85 14.05 -4.00 -0.06 -21.91 16 11 N -0.67 -19.61 5.35 -317.22 -1.70 -21.31 16 12 C 0.21 7.77 6.27 38.13 0.24 8.01 16 13 C -0.20 -7.39 8.65 22.42 0.19 -7.20 16 14 C -0.05 -1.85 10.03 22.24 0.22 -1.63 16 15 C -0.21 -9.41 9.99 22.41 0.22 -9.18 16 16 C 0.13 6.78 6.64 22.56 0.15 6.93 16 17 O -0.23 -13.59 9.76 -22.74 -0.22 -13.81 16 18 C -0.41 -23.72 9.44 67.92 0.64 -23.08 16 19 H 0.10 5.29 5.30 -2.91 -0.02 5.28 16 20 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 21 N -0.92 -56.18 13.67 21.61 0.30 -55.89 16 22 Si 1.02 42.39 29.55 68.60 2.03 44.42 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 26 C -0.26 -11.49 9.04 22.51 0.20 -11.29 16 27 H 0.04 0.36 8.14 -2.38 -0.02 0.34 16 28 H 0.08 0.80 8.12 -2.38 -0.02 0.78 16 29 H 0.05 0.82 7.29 -2.39 -0.02 0.80 16 30 H 0.08 0.45 8.12 -2.39 -0.02 0.43 16 31 H 0.07 0.52 8.12 -2.39 -0.02 0.50 16 32 H 0.04 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.08 0.60 8.12 -2.39 -0.02 0.58 16 34 H 0.12 0.86 8.06 -2.38 -0.02 0.84 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.41 6.53 8.47 -92.71 -0.79 5.75 16 38 H 0.42 9.43 8.83 -92.71 -0.82 8.61 16 39 H 0.13 4.70 6.43 -2.91 -0.02 4.68 16 40 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.12 5.08 8.06 -2.91 -0.02 5.05 16 42 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 43 H 0.13 5.56 5.72 -2.91 -0.02 5.54 16 Total: -1.00 -76.43 374.11 0.34 -76.09 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.54 Total: 32.64 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 8.03 Total: -11.15 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -8.90 Total: -106.28 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.28 Total: -35.72 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -76.43 0.34 -76.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929743073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.167 kcal (2) G-P(sol) polarization free energy of solvation -76.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds