Wall clock time and date at job start Tue Mar 31 2020 11:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99710 * 2 1 4 4 C 1.52999 * 109.47214 * 66.04884 * 3 2 1 5 5 C 1.50698 * 109.47050 * 180.02562 * 4 3 2 6 6 N 1.30970 * 126.44172 * 90.25122 * 5 4 3 7 7 C 1.35217 * 105.58317 * 180.12002 * 6 5 4 8 8 C 1.48423 * 126.41715 * 179.90703 * 7 6 5 9 9 C 1.39328 * 120.12073 * 179.71435 * 8 7 6 10 10 C 1.38010 * 119.88098 * 179.97438 * 9 8 7 11 11 C 1.38325 * 120.12036 * 359.97438 * 10 9 8 12 12 C 1.38323 * 120.23744 * 0.02562 * 11 10 9 13 13 C 1.38017 * 120.12365 * 359.97438 * 12 11 10 14 14 N 1.30766 * 107.16940 * 359.64499 * 7 6 5 15 15 O 1.21294 * 110.09849 * 0.22279 * 14 7 6 16 16 C 1.46897 * 110.99911 * 236.04532 * 2 1 3 17 17 C 1.53000 * 109.47220 * 293.95388 * 16 2 1 18 18 H 1.08997 * 109.47477 * 60.00422 * 17 16 2 19 19 O 1.42897 * 109.47145 * 300.00026 * 17 16 2 20 20 C 1.50707 * 109.46949 * 179.97438 * 17 16 2 21 21 H 1.07995 * 119.99992 * 0.02562 * 20 17 16 22 22 C 1.37874 * 119.99903 * 179.97438 * 20 17 16 23 23 N 1.31524 * 120.00133 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 120.00274 * 180.02562 * 22 20 17 25 25 H 1.48500 * 109.47047 * 60.00056 * 24 22 20 26 26 H 1.48502 * 109.47382 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47051 * 300.00414 * 24 22 20 28 28 H 1.08994 * 109.47269 * 59.99885 * 1 2 3 29 29 H 1.09002 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47080 * 299.99576 * 1 2 3 31 31 H 1.09003 * 109.46883 * 306.04417 * 3 2 1 32 32 H 1.08999 * 109.46834 * 186.04706 * 3 2 1 33 33 H 1.09002 * 109.46881 * 59.99686 * 4 3 2 34 34 H 1.08999 * 109.47074 * 299.99674 * 4 3 2 35 35 H 1.08000 * 120.05605 * 359.97438 * 9 8 7 36 36 H 1.08006 * 119.94346 * 180.02562 * 10 9 8 37 37 H 1.07994 * 119.87991 * 179.72368 * 11 10 9 38 38 H 1.08001 * 119.93386 * 180.02562 * 12 11 10 39 39 H 1.07994 * 120.06263 * 179.97438 * 13 12 11 40 40 H 1.09005 * 109.47457 * 53.95229 * 16 2 1 41 41 H 1.08997 * 109.47270 * 173.95441 * 16 2 1 42 42 H 0.96710 * 113.99543 * 299.99971 * 19 17 16 43 43 H 0.96995 * 119.99862 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1709 3.4646 1.3180 6 7 1.5485 4.5363 0.8945 7 6 2.4135 5.5579 1.0852 8 6 2.1756 6.9863 0.7597 9 6 3.1618 7.9360 1.0181 10 6 2.9355 9.2628 0.7130 11 6 1.7324 9.6504 0.1513 12 6 0.7498 8.7118 -0.1073 13 6 0.9656 7.3822 0.1938 14 7 3.4969 5.0526 1.6153 15 8 3.3728 3.8541 1.7547 16 6 1.9955 -0.7660 -1.1376 17 6 1.6315 -2.2426 -0.9703 18 1 0.5472 -2.3476 -0.9323 19 8 2.2009 -2.7391 0.2426 20 6 2.1710 -3.0283 -2.1377 21 1 2.7191 -2.5249 -2.9203 22 6 1.9659 -4.3900 -2.2060 23 7 1.2989 -5.0032 -1.2526 24 14 2.6352 -5.3640 -3.6526 25 1 4.1124 -5.2208 -3.7047 26 1 2.2829 -6.7974 -3.4897 27 1 2.0431 -4.8483 -4.9130 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1083 33 1 2.0659 1.5015 2.1491 34 1 0.5472 2.0845 1.4265 35 1 4.1017 7.6343 1.4563 36 1 3.6995 9.9997 0.9125 37 1 1.5577 10.6904 -0.0818 38 1 -0.1876 9.0198 -0.5464 39 1 0.1976 6.6503 -0.0081 40 1 1.5611 -0.3873 -2.0628 41 1 3.0797 -0.6611 -1.1756 42 1 3.1653 -2.6771 0.2786 43 1 1.1542 -5.9611 -1.3009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930455816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:38 Heat of formation + Delta-G solvation = 49.151504 kcal Electronic energy + Delta-G solvation = -24993.525975 eV Core-core repulsion = 21235.197281 eV Total energy + Delta-G solvation = -3758.328694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.70310 -39.51173 -37.86789 -36.08735 -35.24803 -33.73284 -32.07752 -31.45511 -31.29635 -30.11622 -28.16696 -26.40935 -25.04746 -24.77640 -23.47207 -22.50690 -21.78800 -20.84344 -20.01576 -18.27670 -18.06422 -17.06231 -16.90776 -15.98448 -15.67366 -15.26910 -15.04531 -14.77540 -14.51905 -14.21039 -13.85422 -13.80712 -13.74642 -13.51791 -13.41527 -12.79453 -12.61821 -12.34561 -12.28325 -11.90179 -11.80377 -11.61708 -11.30256 -11.19999 -11.11428 -10.98850 -10.91407 -10.78190 -10.56287 -10.38320 -10.04917 -9.38568 -9.04093 -8.99186 -8.56585 -8.14215 -7.76274 -6.00926 -4.19437 0.37426 0.97248 1.13245 2.21289 2.61876 3.23035 3.28532 3.34136 3.35641 3.44807 3.72445 4.27420 4.43555 4.53856 4.55450 4.66353 4.82093 4.88836 4.98878 5.05587 5.15901 5.25508 5.27140 5.44350 5.51404 5.57951 5.64673 5.70525 5.79774 5.88420 5.90679 6.02972 6.06546 6.08894 6.12443 6.22319 6.43125 6.48003 6.53679 6.77951 7.41765 7.47627 7.75875 7.86142 7.94889 8.19026 8.84111 9.45928 9.62056 11.03086 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028380 B = 0.002004 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.377021 B =13968.346641 C =14145.505864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.527 5.527 3 C 0.058 3.942 4 C -0.028 4.028 5 C 0.202 3.798 6 N -0.478 5.478 7 C 0.208 3.792 8 C -0.020 4.020 9 C -0.085 4.085 10 C -0.123 4.123 11 C -0.103 4.103 12 C -0.123 4.123 13 C -0.075 4.075 14 N -0.379 5.379 15 O 0.083 5.917 16 C 0.031 3.969 17 C 0.237 3.763 18 H 0.056 0.944 19 O -0.554 6.554 20 C -0.576 4.576 21 H 0.054 0.946 22 C 0.080 3.920 23 N -0.858 5.858 24 Si 0.889 3.111 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.019 0.981 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.028 0.972 41 H 0.064 0.936 42 H 0.343 0.657 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 26.053 5.008 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.251 5.251 3 C -0.072 4.072 4 C -0.068 4.068 5 C -0.019 4.019 6 N -0.211 5.211 7 C -0.062 4.062 8 C -0.022 4.022 9 C -0.105 4.105 10 C -0.141 4.141 11 C -0.122 4.122 12 C -0.141 4.141 13 C -0.095 4.095 14 N -0.086 5.086 15 O 0.023 5.977 16 C -0.097 4.097 17 C 0.179 3.821 18 H 0.074 0.926 19 O -0.356 6.356 20 C -0.614 4.614 21 H 0.072 0.928 22 C -0.126 4.126 23 N -0.493 5.493 24 Si 0.717 3.283 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.202 1.202 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.154 0.846 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.186 0.814 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.097 26.206 5.706 26.820 hybrid contribution 0.668 -0.190 -1.807 1.936 sum 0.571 26.016 3.899 26.313 Atomic orbital electron populations 1.22478 0.87774 1.03217 0.99289 1.62001 1.07779 1.09934 1.45405 1.22038 1.00948 0.90411 0.93773 1.20397 1.02426 0.81904 1.02039 1.28889 0.81977 0.99028 0.91976 1.72005 1.29595 0.97501 1.22017 1.23913 0.86775 0.96217 0.99309 1.17377 0.96024 0.85935 1.02818 1.21201 0.98496 0.92631 0.98154 1.21096 0.97808 0.95504 0.99706 1.21357 0.93462 0.99872 0.97500 1.21150 0.99782 0.92600 1.00587 1.21259 0.95858 0.96604 0.95803 1.74874 1.22436 0.91079 1.20195 1.85303 1.34512 1.17402 1.60485 1.23133 0.99156 0.98252 0.89110 1.19325 0.94881 0.84222 0.83658 0.92644 1.86560 1.22236 1.86340 1.40422 1.21609 1.38409 0.93373 1.08032 0.92811 1.25016 0.94242 0.97854 0.95508 1.70068 1.38165 1.09544 1.31560 0.86736 0.79570 0.79041 0.83001 1.20146 1.21186 1.20240 0.96219 0.89997 0.92136 0.94604 0.90380 0.86680 0.87032 0.85173 0.85247 0.85492 0.85155 0.84600 0.95336 0.91708 0.81388 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.13 60.07 0.55 0.87 16 2 N -0.53 -8.70 4.63 -242.92 -1.12 -9.83 16 3 C 0.06 0.77 4.94 -3.82 -0.02 0.75 16 4 C -0.03 -0.31 5.77 -27.88 -0.16 -0.47 16 5 C 0.20 2.47 7.75 -12.99 -0.10 2.37 16 6 N -0.48 -6.38 11.26 -9.88 -0.11 -6.49 16 7 C 0.21 2.76 7.80 -156.11 -1.22 1.54 16 8 C -0.02 -0.22 5.88 -104.89 -0.62 -0.84 16 9 C -0.08 -0.82 9.69 -39.26 -0.38 -1.20 16 10 C -0.12 -0.91 10.03 -39.63 -0.40 -1.31 16 11 C -0.10 -0.69 10.04 -39.52 -0.40 -1.09 16 12 C -0.12 -0.92 10.03 -39.63 -0.40 -1.32 16 13 C -0.08 -0.74 9.70 -39.26 -0.38 -1.12 16 14 N -0.38 -5.19 11.86 30.97 0.37 -4.83 16 15 O 0.08 1.08 11.29 18.03 0.20 1.28 16 16 C 0.03 0.60 4.56 -3.83 -0.02 0.58 16 17 C 0.24 5.79 2.70 -27.88 -0.08 5.72 16 18 H 0.06 1.48 6.47 -51.93 -0.34 1.15 16 19 O -0.55 -13.94 12.60 -35.23 -0.44 -14.38 16 20 C -0.58 -15.45 8.76 -34.44 -0.30 -15.75 16 21 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 22 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 23 N -0.86 -24.98 12.84 55.43 0.71 -24.27 16 24 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 1.47 6.30 -51.93 -0.33 1.14 16 30 H 0.06 0.77 6.47 -51.93 -0.34 0.43 16 31 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 33 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.11 1.13 6.55 -51.93 -0.34 0.79 16 35 H 0.13 1.21 7.87 -52.49 -0.41 0.80 16 36 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 37 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.14 1.31 7.88 -52.49 -0.41 0.89 16 40 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 41 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 42 H 0.34 7.75 9.04 45.56 0.41 8.16 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -31.55 366.71 -8.98 -40.53 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.08 Total: 5.74 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -4.01 Total: -9.16 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.16 Total: -45.42 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.24 Total: -13.10 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.55 -8.98 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930455816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.684 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds