Wall clock time and date at job start Tue Mar 31 2020 11:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99710 * 2 1 4 4 C 1.52999 * 109.47214 * 66.04884 * 3 2 1 5 5 C 1.50698 * 109.47050 * 180.02562 * 4 3 2 6 6 N 1.30970 * 126.44172 * 90.25122 * 5 4 3 7 7 C 1.35217 * 105.58317 * 180.12002 * 6 5 4 8 8 C 1.48423 * 126.41715 * 179.90703 * 7 6 5 9 9 C 1.39328 * 120.12073 * 179.71435 * 8 7 6 10 10 C 1.38010 * 119.88098 * 179.97438 * 9 8 7 11 11 C 1.38325 * 120.12036 * 359.97438 * 10 9 8 12 12 C 1.38323 * 120.23744 * 0.02562 * 11 10 9 13 13 C 1.38017 * 120.12365 * 359.97438 * 12 11 10 14 14 N 1.30766 * 107.16940 * 359.64499 * 7 6 5 15 15 O 1.21294 * 110.09849 * 0.22279 * 14 7 6 16 16 C 1.46897 * 110.99911 * 236.04532 * 2 1 3 17 17 C 1.53000 * 109.47220 * 293.95388 * 16 2 1 18 18 H 1.08997 * 109.47477 * 60.00422 * 17 16 2 19 19 O 1.42897 * 109.47145 * 300.00026 * 17 16 2 20 20 C 1.50707 * 109.46949 * 179.97438 * 17 16 2 21 21 H 1.07995 * 119.99992 * 0.02562 * 20 17 16 22 22 C 1.37874 * 119.99903 * 179.97438 * 20 17 16 23 23 N 1.31524 * 120.00133 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 120.00274 * 180.02562 * 22 20 17 25 25 H 1.48500 * 109.47047 * 60.00056 * 24 22 20 26 26 H 1.48502 * 109.47382 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47051 * 300.00414 * 24 22 20 28 28 H 1.08994 * 109.47269 * 59.99885 * 1 2 3 29 29 H 1.09002 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47080 * 299.99576 * 1 2 3 31 31 H 1.09003 * 109.46883 * 306.04417 * 3 2 1 32 32 H 1.08999 * 109.46834 * 186.04706 * 3 2 1 33 33 H 1.09002 * 109.46881 * 59.99686 * 4 3 2 34 34 H 1.08999 * 109.47074 * 299.99674 * 4 3 2 35 35 H 1.08000 * 120.05605 * 359.97438 * 9 8 7 36 36 H 1.08006 * 119.94346 * 180.02562 * 10 9 8 37 37 H 1.07994 * 119.87991 * 179.72368 * 11 10 9 38 38 H 1.08001 * 119.93386 * 180.02562 * 12 11 10 39 39 H 1.07994 * 120.06263 * 179.97438 * 13 12 11 40 40 H 1.09005 * 109.47457 * 53.95229 * 16 2 1 41 41 H 1.08997 * 109.47270 * 173.95441 * 16 2 1 42 42 H 0.96710 * 113.99543 * 299.99971 * 19 17 16 43 43 H 0.96995 * 119.99862 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1709 3.4646 1.3180 6 7 1.5485 4.5363 0.8945 7 6 2.4135 5.5579 1.0852 8 6 2.1756 6.9863 0.7597 9 6 3.1618 7.9360 1.0181 10 6 2.9355 9.2628 0.7130 11 6 1.7324 9.6504 0.1513 12 6 0.7498 8.7118 -0.1073 13 6 0.9656 7.3822 0.1938 14 7 3.4969 5.0526 1.6153 15 8 3.3728 3.8541 1.7547 16 6 1.9955 -0.7660 -1.1376 17 6 1.6315 -2.2426 -0.9703 18 1 0.5472 -2.3476 -0.9323 19 8 2.2009 -2.7391 0.2426 20 6 2.1710 -3.0283 -2.1377 21 1 2.7191 -2.5249 -2.9203 22 6 1.9659 -4.3900 -2.2060 23 7 1.2989 -5.0032 -1.2526 24 14 2.6352 -5.3640 -3.6526 25 1 4.1124 -5.2208 -3.7047 26 1 2.2829 -6.7974 -3.4897 27 1 2.0431 -4.8483 -4.9130 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1083 33 1 2.0659 1.5015 2.1491 34 1 0.5472 2.0845 1.4265 35 1 4.1017 7.6343 1.4563 36 1 3.6995 9.9997 0.9125 37 1 1.5577 10.6904 -0.0818 38 1 -0.1876 9.0198 -0.5464 39 1 0.1976 6.6503 -0.0081 40 1 1.5611 -0.3873 -2.0628 41 1 3.0797 -0.6611 -1.1756 42 1 3.1653 -2.6771 0.2786 43 1 1.1542 -5.9611 -1.3009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930455816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:37 Heat of formation + Delta-G solvation = 26.277532 kcal Electronic energy + Delta-G solvation = -24994.517865 eV Core-core repulsion = 21235.197281 eV Total energy + Delta-G solvation = -3759.320584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.68243 -40.14874 -39.27353 -37.22473 -36.76734 -34.83906 -34.16730 -32.25539 -31.98318 -31.19805 -29.80633 -27.82644 -26.37837 -25.86968 -24.49161 -23.23844 -23.01215 -21.79969 -21.59085 -19.29492 -19.02876 -18.89245 -17.67509 -16.92103 -16.67340 -16.60443 -16.53570 -16.31577 -15.82580 -15.39726 -15.21081 -14.80050 -14.73534 -14.43232 -14.24166 -14.18753 -14.03397 -13.59284 -13.37945 -13.11333 -12.83946 -12.80616 -12.75157 -12.51705 -12.40972 -12.38913 -12.25732 -12.04421 -11.97549 -11.87353 -11.35081 -10.93629 -10.65077 -10.05872 -10.00688 -9.73712 -9.16308 -8.10260 -6.35623 -0.41491 0.23501 0.35611 1.33905 1.42681 1.43671 1.51775 1.66986 2.35151 2.41266 2.79398 2.80658 3.12364 3.16717 3.78008 3.86720 3.96340 3.98304 4.05826 4.16849 4.27824 4.34133 4.39909 4.44779 4.47652 4.54055 4.59245 4.65315 4.68387 4.77281 4.85858 4.88650 4.99647 5.02743 5.08229 5.17184 5.39251 5.43198 5.47313 5.63786 5.79636 5.90188 5.99256 6.19947 6.23578 6.77507 6.98868 7.38581 7.68652 8.93655 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028380 B = 0.002004 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.377021 B =13968.346641 C =14145.505864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.534 5.534 3 C 0.063 3.937 4 C -0.017 4.017 5 C 0.207 3.793 6 N -0.493 5.493 7 C 0.203 3.797 8 C -0.052 4.052 9 C -0.097 4.097 10 C -0.122 4.122 11 C -0.095 4.095 12 C -0.123 4.123 13 C -0.088 4.088 14 N -0.397 5.397 15 O 0.077 5.923 16 C 0.047 3.953 17 C 0.237 3.763 18 H 0.025 0.975 19 O -0.569 6.569 20 C -0.589 4.589 21 H 0.057 0.943 22 C 0.027 3.973 23 N -0.897 5.897 24 Si 0.957 3.043 25 H -0.268 1.268 26 H -0.285 1.285 27 H -0.270 1.270 28 H 0.026 0.974 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.130 0.870 40 H 0.025 0.975 41 H 0.071 0.929 42 H 0.353 0.647 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 28.373 4.422 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.258 5.258 3 C -0.066 4.066 4 C -0.056 4.056 5 C -0.013 4.013 6 N -0.226 5.226 7 C -0.066 4.066 8 C -0.054 4.054 9 C -0.117 4.117 10 C -0.140 4.140 11 C -0.113 4.113 12 C -0.140 4.140 13 C -0.108 4.108 14 N -0.106 5.106 15 O 0.019 5.981 16 C -0.081 4.081 17 C 0.179 3.821 18 H 0.043 0.957 19 O -0.372 6.372 20 C -0.628 4.628 21 H 0.076 0.924 22 C -0.176 4.176 23 N -0.534 5.534 24 Si 0.782 3.218 25 H -0.193 1.193 26 H -0.211 1.211 27 H -0.195 1.195 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.174 0.826 37 H 0.178 0.822 38 H 0.173 0.827 39 H 0.148 0.852 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.197 0.803 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.187 28.534 5.121 28.990 hybrid contribution 0.550 -0.785 -1.608 1.872 sum 0.737 27.749 3.513 27.980 Atomic orbital electron populations 1.22472 0.87185 1.01773 1.01163 1.61889 1.08400 1.11701 1.43801 1.21996 1.00966 0.88525 0.95095 1.20349 1.03176 0.81001 1.01093 1.29062 0.81681 0.99235 0.91364 1.72008 1.30065 0.97919 1.22611 1.24377 0.86452 0.97196 0.98591 1.17616 0.97445 0.85334 1.04965 1.21310 0.98107 0.93573 0.98744 1.21447 0.98855 0.94909 0.98744 1.21791 0.92540 1.01342 0.95675 1.21489 1.01065 0.91660 0.99824 1.21344 0.95292 0.97770 0.96393 1.74857 1.23020 0.91357 1.21336 1.85274 1.34780 1.17309 1.60755 1.22718 0.99549 0.95646 0.90144 1.19182 0.93065 0.87120 0.82743 0.95744 1.86504 1.23156 1.86869 1.40638 1.22039 1.37966 0.93971 1.08776 0.92436 1.25861 0.94515 0.99099 0.98129 1.70207 1.39783 1.09726 1.33702 0.85658 0.79152 0.77338 0.79675 1.19271 1.21095 1.19506 0.95596 0.93077 0.88987 0.94717 0.90106 0.85247 0.85809 0.85694 0.82637 0.82155 0.82662 0.85242 0.95658 0.91042 0.80283 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.13 127.69 1.17 1.83 16 2 N -0.53 -17.20 4.63 -922.45 -4.27 -21.47 16 3 C 0.06 1.60 4.94 86.30 0.43 2.02 16 4 C -0.02 -0.35 5.77 29.85 0.17 -0.17 16 5 C 0.21 4.93 7.75 88.36 0.68 5.61 16 6 N -0.49 -13.04 11.26 -302.48 -3.41 -16.45 16 7 C 0.20 5.46 7.80 137.30 1.07 6.53 16 8 C -0.05 -1.17 5.88 -20.04 -0.12 -1.29 16 9 C -0.10 -1.82 9.69 22.48 0.22 -1.60 16 10 C -0.12 -1.52 10.03 22.24 0.22 -1.30 16 11 C -0.10 -0.98 10.04 22.31 0.22 -0.75 16 12 C -0.12 -1.56 10.03 22.24 0.22 -1.34 16 13 C -0.09 -1.66 9.70 22.48 0.22 -1.44 16 14 N -0.40 -11.02 11.86 -59.10 -0.70 -11.72 16 15 O 0.08 1.99 11.29 74.56 0.84 2.84 16 16 C 0.05 1.85 4.56 86.30 0.39 2.24 16 17 C 0.24 11.77 2.70 29.85 0.08 11.85 16 18 H 0.02 1.37 6.47 -2.39 -0.02 1.36 16 19 O -0.57 -29.02 12.60 -148.98 -1.88 -30.89 16 20 C -0.59 -31.81 8.76 25.60 0.22 -31.59 16 21 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 22 C 0.03 1.47 5.40 84.65 0.46 1.93 16 23 N -0.90 -53.16 12.84 21.45 0.28 -52.89 16 24 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 1.87 6.30 -2.39 -0.02 1.86 16 30 H 0.09 2.17 6.47 -2.39 -0.02 2.16 16 31 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 32 H 0.08 2.01 7.93 -2.39 -0.02 1.99 16 33 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.12 2.23 6.55 -2.39 -0.02 2.21 16 35 H 0.13 2.36 7.87 -2.91 -0.02 2.33 16 36 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.16 0.59 8.06 -2.91 -0.02 0.56 16 38 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.13 2.50 7.88 -2.91 -0.02 2.47 16 40 H 0.03 0.99 8.12 -2.38 -0.02 0.97 16 41 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 42 H 0.35 16.05 9.04 -74.05 -0.67 15.38 16 43 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -69.01 366.71 -1.08 -70.09 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.37 Total: 22.99 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 5.66 Total: -7.48 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -8.10 Total: -102.53 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -1.03 Total: -28.06 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -69.01 -1.08 -70.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930455816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.369 kcal (2) G-P(sol) polarization free energy of solvation -69.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds