Wall clock time and date at job start Tue Mar 31 2020 11:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34776 * 120.00079 * 2 1 4 4 O 1.21582 * 120.00124 * 0.02562 * 3 2 1 5 5 N 1.34778 * 119.99980 * 180.02562 * 3 2 1 6 6 C 1.39429 * 120.00160 * 183.68589 * 5 3 2 7 7 C 1.39139 * 119.92622 * 323.92856 * 6 5 3 8 8 C 1.37657 * 120.07604 * 180.02562 * 7 6 5 9 9 C 1.39753 * 119.92745 * 0.23138 * 8 7 6 10 10 C 1.47584 * 120.07690 * 179.74967 * 9 8 7 11 11 O 1.21584 * 119.99903 * 5.33405 * 10 9 8 12 12 N 1.34775 * 119.99823 * 185.33744 * 10 9 8 13 13 C 1.46498 * 119.99615 * 174.91865 * 12 10 9 14 14 C 1.53006 * 109.47140 * 184.86757 * 13 12 10 15 15 C 1.50697 * 115.55023 * 306.07753 * 14 13 12 16 16 H 1.07993 * 120.00202 * 144.27389 * 15 14 13 17 17 C 1.37882 * 120.00093 * 324.27360 * 15 14 13 18 18 N 1.31514 * 119.99998 * 3.20135 * 17 15 14 19 19 Si 1.86797 * 120.00171 * 183.19883 * 17 15 14 20 20 H 1.48499 * 109.46898 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47112 * 120.00076 * 19 17 15 22 22 H 1.48499 * 109.47300 * 239.99902 * 19 17 15 23 23 C 1.53000 * 117.49899 * 160.40472 * 14 13 12 24 24 C 1.53003 * 117.49501 * 91.74222 * 14 13 12 25 25 C 1.39763 * 119.84849 * 359.51354 * 9 8 7 26 26 C 1.37662 * 119.92553 * 0.48837 * 25 9 8 27 27 H 1.09002 * 109.47265 * 59.99067 * 1 2 3 28 28 H 1.09000 * 109.47612 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46851 * 299.99262 * 1 2 3 30 30 H 0.97001 * 119.99943 * 180.02562 * 2 1 3 31 31 H 0.96999 * 120.00235 * 3.68766 * 5 3 2 32 32 H 1.08001 * 119.96223 * 0.02562 * 7 6 5 33 33 H 1.08002 * 120.03456 * 179.97438 * 8 7 6 34 34 H 0.96998 * 120.00134 * 354.92792 * 12 10 9 35 35 H 1.08993 * 109.47661 * 304.87188 * 13 12 10 36 36 H 1.09002 * 109.47040 * 64.87597 * 13 12 10 37 37 H 0.96996 * 120.00141 * 185.00340 * 18 17 15 38 38 H 1.08997 * 117.49454 * 359.97438 * 23 14 13 39 39 H 1.08992 * 117.49684 * 145.02829 * 23 14 13 40 40 H 1.08998 * 117.49426 * 214.97845 * 24 14 13 41 41 H 1.08999 * 117.49976 * 359.97438 * 24 14 13 42 42 H 1.08000 * 120.03423 * 180.21097 * 25 9 8 43 43 H 1.07995 * 119.96062 * 179.74867 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4866 1.1672 -0.0005 6 6 4.1839 2.3721 0.0771 7 6 3.6866 3.5042 -0.5610 8 6 4.3727 4.6952 -0.4868 9 6 5.5725 4.7655 0.2264 10 6 6.3137 6.0394 0.3034 11 8 5.8342 7.0513 -0.1705 12 7 7.5219 6.0811 0.8990 13 6 8.3066 7.3181 0.8781 14 6 9.6760 7.0642 1.5114 15 6 9.6517 6.4657 2.8942 16 1 10.4094 5.7546 3.1882 17 6 8.6620 6.8259 3.7841 18 7 7.7036 7.6432 3.4061 19 14 8.6826 6.1531 5.5266 20 1 9.8577 5.2618 5.6991 21 1 8.7701 7.2791 6.4910 22 1 7.4367 5.3843 5.7751 23 6 10.7976 8.0538 1.1896 24 6 10.8182 6.6489 0.5819 25 6 6.0664 3.6278 0.8707 26 6 5.3753 2.4398 0.7924 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.9499 -0.8401 -0.0004 31 1 3.9716 0.3289 -0.0549 32 1 2.7613 3.4483 -1.1152 33 1 3.9864 5.5734 -0.9828 34 1 7.8721 5.2921 1.3414 35 1 8.4383 7.6474 -0.1525 36 1 7.7830 8.0900 1.4421 37 1 7.0489 7.9541 4.0508 38 1 10.5600 8.8855 0.5263 39 1 11.5182 8.2716 1.9779 40 1 11.5522 5.9432 0.9708 41 1 10.5938 6.5562 -0.4807 42 1 6.9916 3.6796 1.4255 43 1 5.7585 1.5594 1.2867 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935782543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:04 Heat of formation + Delta-G solvation = -4.071618 kcal Electronic energy + Delta-G solvation = -25839.994976 eV Core-core repulsion = 22079.358354 eV Total energy + Delta-G solvation = -3760.636622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83054 -39.32686 -37.88735 -36.58855 -34.98478 -34.77221 -33.07342 -32.18480 -30.76096 -29.90364 -27.03933 -25.93154 -25.24258 -23.22165 -22.42329 -21.26736 -21.16310 -19.62224 -19.26666 -18.91371 -17.93080 -17.21723 -16.15501 -15.87834 -15.40330 -15.25162 -14.84730 -14.77470 -14.34937 -14.22712 -13.97372 -13.70101 -13.49306 -13.23705 -13.04286 -12.66126 -12.56461 -12.44427 -12.13306 -11.76243 -11.39536 -11.11612 -11.09966 -10.72912 -10.52744 -10.50801 -10.25691 -10.13515 -9.71170 -9.53968 -9.11129 -8.89983 -8.85879 -8.81684 -8.29064 -8.11912 -7.72440 -6.00815 -4.20829 1.09264 1.57638 2.31121 2.81942 3.20737 3.31321 3.32996 3.50228 3.84176 4.17663 4.29269 4.36470 4.78556 4.95887 4.97593 5.07978 5.16592 5.40474 5.43541 5.49081 5.53696 5.54887 5.73150 5.99332 6.03219 6.16427 6.19531 6.29661 6.33848 6.53701 6.56812 6.62751 6.63648 6.70442 6.75192 6.91305 7.08433 7.12873 7.26821 7.56478 7.59389 7.68798 7.98047 8.21247 8.30988 8.61884 8.83638 9.23088 9.42859 10.88874 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017401 B = 0.003052 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.724000 B = 9172.642422 C = 9911.582097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.748 5.748 3 C 0.700 3.300 4 O -0.567 6.567 5 N -0.684 5.684 6 C 0.170 3.830 7 C -0.129 4.129 8 C -0.048 4.048 9 C -0.131 4.131 10 C 0.544 3.456 11 O -0.562 6.562 12 N -0.674 5.674 13 C 0.164 3.836 14 C 0.035 3.965 15 C -0.498 4.498 16 H 0.062 0.938 17 C 0.073 3.927 18 N -0.865 5.865 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.198 4.198 24 C -0.212 4.212 25 C -0.067 4.067 26 C -0.153 4.153 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.398 0.602 31 H 0.406 0.594 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.398 0.602 35 H 0.023 0.977 36 H 0.114 0.886 37 H 0.263 0.737 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.135 0.865 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 -18.084 -6.507 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.404 5.404 3 C 0.400 3.600 4 O -0.443 6.443 5 N -0.331 5.331 6 C 0.075 3.925 7 C -0.149 4.149 8 C -0.067 4.067 9 C -0.135 4.135 10 C 0.330 3.670 11 O -0.443 6.443 12 N -0.321 5.321 13 C 0.041 3.959 14 C 0.035 3.965 15 C -0.536 4.536 16 H 0.080 0.920 17 C -0.131 4.131 18 N -0.501 5.501 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.237 4.237 24 C -0.249 4.249 25 C -0.086 4.086 26 C -0.174 4.174 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.232 0.768 31 H 0.241 0.759 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.234 0.766 35 H 0.041 0.959 36 H 0.132 0.868 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.153 0.847 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.100 -16.378 -6.766 20.397 hybrid contribution 0.744 -1.554 1.305 2.161 sum -9.356 -17.932 -5.461 20.951 Atomic orbital electron populations 1.21444 0.77658 1.02151 1.02628 1.44911 1.08015 1.06922 1.80503 1.15966 0.81439 0.84611 0.77969 1.90980 1.67437 1.29877 1.55979 1.42428 1.04975 1.08597 1.77109 1.17584 0.92566 0.85593 0.96767 1.21157 1.01240 0.91835 1.00672 1.21164 0.92345 0.97533 0.95681 1.20261 0.97109 0.94434 1.01725 1.18032 0.81711 0.87620 0.79611 1.90695 1.68263 1.35293 1.50053 1.45597 1.17180 1.15959 1.53349 1.21101 0.91083 0.87484 0.96222 1.19246 0.86169 0.97225 0.93898 1.20549 1.11405 1.26057 0.95549 0.92011 1.25021 0.94453 0.95054 0.98600 1.69890 1.14319 1.32290 1.33577 0.86543 0.77937 0.79004 0.84626 1.19736 1.20851 1.20871 1.22940 1.06334 0.91605 1.02823 1.22956 1.05959 0.98451 0.97561 1.21216 0.99304 0.91297 0.96821 1.20739 0.96410 0.98946 1.01298 0.92122 0.90491 0.92102 0.76842 0.75864 0.84226 0.84514 0.76601 0.95898 0.86848 0.92627 0.91443 0.90214 0.90647 0.91338 0.84717 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.63 10.70 59.84 0.64 1.27 16 2 N -0.75 -5.15 5.72 -72.07 -0.41 -5.56 16 3 C 0.70 7.87 8.39 -86.92 -0.73 7.14 16 4 O -0.57 -8.96 13.84 5.29 0.07 -8.88 16 5 N -0.68 -6.63 5.32 -14.22 -0.08 -6.71 16 6 C 0.17 2.23 6.27 -83.74 -0.53 1.70 16 7 C -0.13 -1.96 8.65 -39.46 -0.34 -2.30 16 8 C -0.05 -0.81 9.58 -39.23 -0.38 -1.18 16 9 C -0.13 -2.39 5.88 -104.95 -0.62 -3.00 16 10 C 0.54 11.97 7.75 -12.45 -0.10 11.88 16 11 O -0.56 -14.14 16.36 5.29 0.09 -14.05 16 12 N -0.67 -14.84 5.08 -61.33 -0.31 -15.16 16 13 C 0.16 3.94 4.61 -4.04 -0.02 3.92 16 14 C 0.04 0.83 2.07 -155.66 -0.32 0.51 16 15 C -0.50 -12.49 8.28 -34.44 -0.29 -12.78 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 18 N -0.86 -23.10 10.19 55.43 0.56 -22.54 16 19 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.20 -4.33 9.96 -26.69 -0.27 -4.60 16 24 C -0.21 -4.39 9.92 -26.69 -0.26 -4.66 16 25 C -0.07 -1.03 9.53 -39.22 -0.37 -1.40 16 26 C -0.15 -1.94 9.95 -39.46 -0.39 -2.34 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.40 1.33 8.85 -40.82 -0.36 0.97 16 31 H 0.41 2.30 8.84 -40.82 -0.36 1.94 16 32 H 0.14 2.15 6.31 -52.49 -0.33 1.82 16 33 H 0.14 2.34 7.65 -52.49 -0.40 1.94 16 34 H 0.40 8.26 5.96 -40.82 -0.24 8.02 16 35 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.11 3.10 5.94 -51.93 -0.31 2.80 16 37 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.14 1.97 6.41 -52.49 -0.34 1.63 16 43 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -32.99 363.43 -9.37 -42.36 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -5.69 Total: 14.20 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -4.06 Total: -4.07 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.23 Total: -49.97 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.16 Total: -22.94 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.99 -9.37 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935782543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.292 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds