Wall clock time and date at job start Tue Mar 31 2020 11:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34776 * 120.00079 * 2 1 4 4 O 1.21582 * 120.00124 * 0.02562 * 3 2 1 5 5 N 1.34778 * 119.99980 * 180.02562 * 3 2 1 6 6 C 1.39429 * 120.00160 * 183.68589 * 5 3 2 7 7 C 1.39139 * 119.92622 * 323.92856 * 6 5 3 8 8 C 1.37657 * 120.07604 * 180.02562 * 7 6 5 9 9 C 1.39753 * 119.92745 * 0.23138 * 8 7 6 10 10 C 1.47584 * 120.07690 * 179.74967 * 9 8 7 11 11 O 1.21584 * 119.99903 * 5.33405 * 10 9 8 12 12 N 1.34775 * 119.99823 * 185.33744 * 10 9 8 13 13 C 1.46498 * 119.99615 * 174.91865 * 12 10 9 14 14 C 1.53006 * 109.47140 * 184.86757 * 13 12 10 15 15 C 1.50697 * 115.55023 * 306.07753 * 14 13 12 16 16 H 1.07993 * 120.00202 * 144.27389 * 15 14 13 17 17 C 1.37882 * 120.00093 * 324.27360 * 15 14 13 18 18 N 1.31514 * 119.99998 * 3.20135 * 17 15 14 19 19 Si 1.86797 * 120.00171 * 183.19883 * 17 15 14 20 20 H 1.48499 * 109.46898 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47112 * 120.00076 * 19 17 15 22 22 H 1.48499 * 109.47300 * 239.99902 * 19 17 15 23 23 C 1.53000 * 117.49899 * 160.40472 * 14 13 12 24 24 C 1.53003 * 117.49501 * 91.74222 * 14 13 12 25 25 C 1.39763 * 119.84849 * 359.51354 * 9 8 7 26 26 C 1.37662 * 119.92553 * 0.48837 * 25 9 8 27 27 H 1.09002 * 109.47265 * 59.99067 * 1 2 3 28 28 H 1.09000 * 109.47612 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46851 * 299.99262 * 1 2 3 30 30 H 0.97001 * 119.99943 * 180.02562 * 2 1 3 31 31 H 0.96999 * 120.00235 * 3.68766 * 5 3 2 32 32 H 1.08001 * 119.96223 * 0.02562 * 7 6 5 33 33 H 1.08002 * 120.03456 * 179.97438 * 8 7 6 34 34 H 0.96998 * 120.00134 * 354.92792 * 12 10 9 35 35 H 1.08993 * 109.47661 * 304.87188 * 13 12 10 36 36 H 1.09002 * 109.47040 * 64.87597 * 13 12 10 37 37 H 0.96996 * 120.00141 * 185.00340 * 18 17 15 38 38 H 1.08997 * 117.49454 * 359.97438 * 23 14 13 39 39 H 1.08992 * 117.49684 * 145.02829 * 23 14 13 40 40 H 1.08998 * 117.49426 * 214.97845 * 24 14 13 41 41 H 1.08999 * 117.49976 * 359.97438 * 24 14 13 42 42 H 1.08000 * 120.03423 * 180.21097 * 25 9 8 43 43 H 1.07995 * 119.96062 * 179.74867 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4866 1.1672 -0.0005 6 6 4.1839 2.3721 0.0771 7 6 3.6866 3.5042 -0.5610 8 6 4.3727 4.6952 -0.4868 9 6 5.5725 4.7655 0.2264 10 6 6.3137 6.0394 0.3034 11 8 5.8342 7.0513 -0.1705 12 7 7.5219 6.0811 0.8990 13 6 8.3066 7.3181 0.8781 14 6 9.6760 7.0642 1.5114 15 6 9.6517 6.4657 2.8942 16 1 10.4094 5.7546 3.1882 17 6 8.6620 6.8259 3.7841 18 7 7.7036 7.6432 3.4061 19 14 8.6826 6.1531 5.5266 20 1 9.8577 5.2618 5.6991 21 1 8.7701 7.2791 6.4910 22 1 7.4367 5.3843 5.7751 23 6 10.7976 8.0538 1.1896 24 6 10.8182 6.6489 0.5819 25 6 6.0664 3.6278 0.8707 26 6 5.3753 2.4398 0.7924 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.9499 -0.8401 -0.0004 31 1 3.9716 0.3289 -0.0549 32 1 2.7613 3.4483 -1.1152 33 1 3.9864 5.5734 -0.9828 34 1 7.8721 5.2921 1.3414 35 1 8.4383 7.6474 -0.1525 36 1 7.7830 8.0900 1.4421 37 1 7.0489 7.9541 4.0508 38 1 10.5600 8.8855 0.5263 39 1 11.5182 8.2716 1.9779 40 1 11.5522 5.9432 0.9708 41 1 10.5938 6.5562 -0.4807 42 1 6.9916 3.6796 1.4255 43 1 5.7585 1.5594 1.2867 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935782543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:03 Heat of formation + Delta-G solvation = -27.256193 kcal Electronic energy + Delta-G solvation = -25841.000335 eV Core-core repulsion = 22079.358354 eV Total energy + Delta-G solvation = -3761.641981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80658 -40.78502 -39.26572 -38.33721 -35.88695 -35.71606 -34.83228 -34.11107 -31.97674 -31.09144 -28.09024 -27.56479 -26.90143 -24.39582 -23.66458 -22.94274 -22.12583 -21.19212 -21.06424 -19.76182 -19.16887 -18.62488 -17.83141 -16.95624 -16.75188 -16.61275 -16.23083 -15.90908 -15.85403 -15.68436 -15.27127 -15.14966 -14.77479 -14.56071 -14.17101 -14.07184 -13.75662 -13.59255 -13.45733 -13.27657 -13.04788 -12.93382 -12.57104 -12.29806 -12.24259 -12.02174 -11.60445 -11.52484 -11.24656 -10.92812 -10.77124 -10.63853 -10.23820 -10.14457 -10.00104 -9.68794 -9.11849 -7.93589 -6.19116 -0.17281 0.39862 1.43123 1.48797 1.52565 1.57891 1.80771 2.16923 2.42874 2.53760 2.94154 3.09657 3.19567 3.65024 3.84182 3.96711 4.01476 4.28547 4.33171 4.38381 4.48819 4.52558 4.55616 4.65776 4.78156 4.80892 4.96836 4.98010 5.02304 5.08958 5.16350 5.19759 5.31661 5.34831 5.39394 5.50448 5.54725 5.62272 5.86942 5.88969 5.95700 5.99026 6.38791 6.79390 6.93795 6.99021 7.41787 7.46338 7.51674 8.93703 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017401 B = 0.003052 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.724000 B = 9172.642422 C = 9911.582097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.727 5.727 3 C 0.692 3.308 4 O -0.617 6.617 5 N -0.667 5.667 6 C 0.186 3.814 7 C -0.136 4.136 8 C -0.057 4.057 9 C -0.160 4.160 10 C 0.540 3.460 11 O -0.606 6.606 12 N -0.669 5.669 13 C 0.174 3.826 14 C 0.006 3.994 15 C -0.501 4.501 16 H 0.063 0.937 17 C 0.033 3.967 18 N -0.893 5.893 19 Si 0.950 3.050 20 H -0.262 1.262 21 H -0.290 1.290 22 H -0.284 1.284 23 C -0.200 4.200 24 C -0.185 4.185 25 C -0.064 4.064 26 C -0.137 4.137 27 H 0.049 0.951 28 H 0.118 0.882 29 H 0.045 0.955 30 H 0.420 0.580 31 H 0.430 0.570 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.405 0.595 35 H 0.018 0.982 36 H 0.077 0.923 37 H 0.256 0.744 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.143 0.857 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 -22.178 -5.977 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.383 5.383 3 C 0.393 3.607 4 O -0.497 6.497 5 N -0.316 5.316 6 C 0.089 3.911 7 C -0.156 4.156 8 C -0.077 4.077 9 C -0.164 4.164 10 C 0.328 3.672 11 O -0.491 6.491 12 N -0.316 5.316 13 C 0.050 3.950 14 C 0.006 3.994 15 C -0.538 4.538 16 H 0.081 0.919 17 C -0.169 4.169 18 N -0.530 5.530 19 Si 0.776 3.224 20 H -0.186 1.186 21 H -0.217 1.217 22 H -0.210 1.210 23 C -0.239 4.239 24 C -0.222 4.222 25 C -0.084 4.084 26 C -0.157 4.157 27 H 0.067 0.933 28 H 0.136 0.864 29 H 0.064 0.936 30 H 0.257 0.743 31 H 0.270 0.730 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.242 0.758 35 H 0.036 0.964 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.160 0.840 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.453 -20.590 -6.237 23.499 hybrid contribution 0.488 -0.380 1.090 1.254 sum -8.965 -20.970 -5.146 23.379 Atomic orbital electron populations 1.21607 0.76870 1.04455 1.01370 1.44800 1.08444 1.06488 1.78587 1.16258 0.81688 0.85051 0.77750 1.90963 1.68470 1.32071 1.58192 1.42233 1.04645 1.08465 1.76288 1.17653 0.92450 0.86056 0.94954 1.21124 1.00998 0.92130 1.01383 1.21062 0.92515 0.97962 0.96133 1.19987 0.97857 0.93698 1.04824 1.18668 0.81496 0.88621 0.78412 1.90652 1.69212 1.37304 1.51905 1.45491 1.17193 1.15473 1.53438 1.20786 0.91491 0.87527 0.95192 1.19283 0.86485 0.99350 0.94302 1.20744 1.11108 1.25762 0.96221 0.91863 1.25640 0.94225 0.95311 1.01682 1.70090 1.14980 1.33777 1.34130 0.85630 0.78015 0.78153 0.80579 1.18566 1.21662 1.20986 1.22970 1.05275 0.92514 1.03108 1.22952 1.03878 0.97572 0.97773 1.21338 0.99674 0.91218 0.96140 1.21067 0.95316 0.99270 1.00043 0.93257 0.86366 0.93591 0.74340 0.73032 0.84745 0.86148 0.75845 0.96408 0.90536 0.93429 0.90822 0.90205 0.89394 0.89955 0.83961 0.80979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 10.70 127.77 1.37 2.33 16 2 N -0.73 -7.76 5.72 -500.19 -2.86 -10.62 16 3 C 0.69 14.03 8.39 179.05 1.50 15.53 16 4 O -0.62 -19.18 13.84 -3.97 -0.06 -19.24 16 5 N -0.67 -10.73 5.32 -317.17 -1.69 -12.41 16 6 C 0.19 4.42 6.27 38.37 0.24 4.66 16 7 C -0.14 -4.12 8.65 22.35 0.19 -3.93 16 8 C -0.06 -2.01 9.58 22.50 0.22 -1.80 16 9 C -0.16 -5.93 5.88 -20.08 -0.12 -6.05 16 10 C 0.54 24.79 7.75 86.71 0.67 25.47 16 11 O -0.61 -32.47 16.36 -3.98 -0.07 -32.53 16 12 N -0.67 -30.22 5.08 -466.22 -2.37 -32.59 16 13 C 0.17 8.62 4.61 86.38 0.40 9.01 16 14 C 0.01 0.30 2.07 -52.93 -0.11 0.19 16 15 C -0.50 -24.81 8.28 25.60 0.21 -24.59 16 16 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 17 C 0.03 1.67 5.30 84.66 0.45 2.12 16 18 N -0.89 -48.93 10.19 21.45 0.22 -48.72 16 19 Si 0.95 40.76 29.54 68.60 2.03 42.79 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 23 C -0.20 -8.58 9.96 30.62 0.30 -8.27 16 24 C -0.18 -7.32 9.92 30.62 0.30 -7.01 16 25 C -0.06 -1.87 9.53 22.50 0.21 -1.66 16 26 C -0.14 -3.00 9.95 22.35 0.22 -2.77 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.42 1.00 8.85 -92.71 -0.82 0.18 16 31 H 0.43 2.85 8.84 -92.71 -0.82 2.03 16 32 H 0.13 4.23 6.31 -2.91 -0.02 4.22 16 33 H 0.12 4.52 7.65 -2.91 -0.02 4.49 16 34 H 0.40 16.85 5.96 -92.71 -0.55 16.30 16 35 H 0.02 0.87 8.09 -2.39 -0.02 0.86 16 36 H 0.08 4.41 5.94 -2.39 -0.01 4.39 16 37 H 0.26 13.88 8.32 -92.71 -0.77 13.11 16 38 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.14 3.89 6.41 -2.91 -0.02 3.87 16 43 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -74.99 363.43 0.16 -74.82 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -1.12 Total: 35.27 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 6.07 Total: 3.22 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -6.70 Total: -104.34 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -0.12 Total: -51.77 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -74.99 0.16 -74.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935782543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.568 kcal (2) G-P(sol) polarization free energy of solvation -74.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds