Wall clock time and date at job start Tue Mar 31 2020 11:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35738 * 117.00263 * 2 1 4 4 C 1.39277 * 120.84694 * 359.97438 * 3 2 1 5 5 C 1.37955 * 119.09161 * 180.02562 * 4 3 2 6 6 N 1.31968 * 120.82696 * 359.95123 * 5 4 3 7 7 C 1.31956 * 121.86135 * 0.02762 * 6 5 4 8 8 C 1.37991 * 120.82016 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.45071 * 179.72467 * 8 7 6 10 10 C 1.50697 * 109.46859 * 265.00067 * 9 8 7 11 11 O 1.21275 * 120.00281 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99613 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99948 * 180.02562 * 12 10 9 14 14 H 1.08997 * 115.51640 * 9.41192 * 13 12 10 15 15 C 1.53005 * 117.44108 * 224.00100 * 13 12 10 16 16 H 1.08993 * 119.54311 * 4.11348 * 15 13 12 17 17 C 1.57745 * 116.08266 * 161.58033 * 15 13 12 18 18 N 1.48148 * 104.61972 * 87.39988 * 17 15 13 19 19 C 1.36929 * 127.83281 * 139.76365 * 18 17 15 20 20 H 1.08002 * 120.00634 * 344.35700 * 19 18 17 21 21 C 1.38811 * 119.99939 * 164.35696 * 19 18 17 22 22 N 1.31626 * 120.00091 * 350.57224 * 21 19 18 23 23 Si 1.86796 * 120.00267 * 170.56969 * 21 19 18 24 24 H 1.48500 * 109.47373 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47289 * 120.00083 * 23 21 19 26 26 H 1.48502 * 109.47282 * 239.99998 * 23 21 19 27 27 C 1.48144 * 104.32539 * 319.76513 * 18 17 15 28 28 C 1.53003 * 117.44480 * 154.82903 * 13 12 10 29 29 H 1.08997 * 119.53591 * 355.88467 * 28 13 12 30 30 H 1.08999 * 109.46601 * 59.99881 * 1 2 3 31 31 H 1.08994 * 109.47154 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47081 * 300.00340 * 1 2 3 33 33 H 1.07997 * 120.45492 * 0.04195 * 4 3 2 34 34 H 1.08002 * 119.58620 * 179.97438 * 5 4 3 35 35 H 1.07997 * 119.58660 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46869 * 25.00170 * 9 8 7 37 37 H 1.09000 * 109.46400 * 145.00023 * 9 8 7 38 38 H 0.97000 * 120.00089 * 359.97438 * 12 10 9 39 39 H 1.08998 * 110.95651 * 328.33597 * 17 15 13 40 40 H 1.08994 * 109.94830 * 205.96478 * 17 15 13 41 41 H 0.96992 * 120.00259 * 179.97438 * 22 21 19 42 42 H 1.09001 * 110.40747 * 280.80379 * 27 18 17 43 43 H 1.08996 * 110.50753 * 158.41615 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3886 -0.0005 5 6 1.9678 3.5980 -0.0011 6 7 3.2867 3.6456 -0.0001 7 6 4.0232 2.5508 0.0009 8 6 3.4346 1.3027 0.0014 9 6 4.2839 0.0577 -0.0037 10 6 4.4590 -0.4249 -1.4205 11 8 3.9445 0.1819 -2.3359 12 7 5.1866 -1.5316 -1.6703 13 6 5.3573 -2.0006 -3.0476 14 1 5.0048 -1.3199 -3.8225 15 6 5.2064 -3.5012 -3.3054 16 1 4.9142 -4.1602 -2.4879 17 6 4.9454 -3.9250 -4.8022 18 7 6.2972 -4.0678 -5.3915 19 6 6.7370 -5.0298 -6.2610 20 1 6.1643 -5.9350 -6.3998 21 6 7.9189 -4.8418 -6.9642 22 7 8.5198 -3.6709 -6.9403 23 14 8.6568 -6.2503 -7.9444 24 1 7.7949 -7.4520 -7.8099 25 1 8.7467 -5.8639 -9.3755 26 1 10.0154 -6.5547 -7.4277 27 6 7.0650 -2.9339 -4.8265 28 6 6.5981 -2.8403 -3.3579 29 1 7.3426 -3.0070 -2.5794 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2246 2.3566 -0.0003 34 1 1.4010 4.5173 -0.0019 35 1 5.1001 2.6326 0.0012 36 1 5.2597 0.2818 0.4271 37 1 3.7954 -0.7176 0.5866 38 1 5.5978 -2.0172 -0.9381 39 1 4.3792 -3.1585 -5.3314 40 1 4.4152 -4.8768 -4.8322 41 1 9.3458 -3.5396 -7.4314 42 1 6.8298 -2.0125 -5.3594 43 1 8.1350 -3.1364 -4.8730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960542784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:57 Heat of formation + Delta-G solvation = 28.029468 kcal Electronic energy + Delta-G solvation = -25663.194015 eV Core-core repulsion = 21903.949400 eV Total energy + Delta-G solvation = -3759.244615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.05233 -39.62184 -38.46330 -38.14175 -34.44114 -33.56127 -32.56393 -31.45864 -30.32920 -28.36604 -27.71096 -27.00082 -25.55350 -23.16892 -23.13900 -21.63404 -20.50164 -20.09412 -19.28049 -18.61347 -17.42497 -17.05686 -16.83701 -16.36475 -16.05498 -15.39219 -15.25678 -14.81299 -14.70630 -14.49308 -14.15143 -13.80549 -13.48117 -13.43053 -13.15865 -12.74864 -12.62792 -12.25816 -12.20938 -11.88834 -11.53945 -11.45875 -11.40516 -10.97510 -10.84935 -10.34161 -10.18760 -10.13180 -9.88066 -9.74685 -9.71964 -9.36703 -9.21266 -8.93728 -8.73904 -8.29141 -6.87046 -5.80128 -3.14330 0.83721 1.13123 2.69644 2.81972 3.15081 3.37856 3.43676 3.46291 3.64926 4.16925 4.34328 4.36492 4.46571 4.51668 4.59519 4.75948 4.81193 4.86696 4.99475 5.06484 5.15195 5.19495 5.31940 5.38335 5.41718 5.46418 5.59043 5.67079 5.74899 5.79855 5.87677 6.17004 6.26201 6.30979 6.52575 6.69472 6.83703 6.88765 6.89750 7.35382 7.53298 7.62154 7.71612 7.79491 8.19954 8.34207 9.10572 9.73330 10.50589 11.34385 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028631 B = 0.002377 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.737263 B =11778.985737 C =12238.210352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.184 3.816 4 C -0.263 4.263 5 C 0.133 3.867 6 N -0.508 5.508 7 C 0.146 3.854 8 C -0.149 4.149 9 C -0.089 4.089 10 C 0.519 3.481 11 O -0.532 6.532 12 N -0.699 5.699 13 C 0.095 3.905 14 H 0.130 0.870 15 C -0.186 4.186 16 H 0.106 0.894 17 C 0.158 3.842 18 N -0.593 5.593 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.914 5.914 23 Si 0.913 3.087 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.185 3.815 28 C -0.180 4.180 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.398 0.602 39 H 0.030 0.970 40 H 0.050 0.950 41 H 0.254 0.746 42 H 0.026 0.974 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.516 9.617 19.958 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.130 3.870 4 C -0.284 4.284 5 C -0.023 4.023 6 N -0.219 5.219 7 C -0.010 4.010 8 C -0.152 4.152 9 C -0.130 4.130 10 C 0.305 3.695 11 O -0.408 6.408 12 N -0.348 5.348 13 C -0.011 4.011 14 H 0.148 0.852 15 C -0.207 4.207 16 H 0.124 0.876 17 C 0.030 3.970 18 N -0.316 5.316 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.560 5.560 23 Si 0.743 3.257 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.059 3.941 28 C -0.201 4.201 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.232 0.768 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.232 10.565 19.084 25.513 hybrid contribution -0.083 -1.724 -0.059 1.727 sum -13.315 8.841 19.025 24.847 Atomic orbital electron populations 1.23143 0.77706 1.04488 1.01556 1.86069 1.21922 1.26213 1.87416 1.19102 0.91827 0.84720 0.91345 1.22170 1.01456 0.93179 1.11554 1.22536 0.90346 0.96917 0.92522 1.67734 1.07095 1.31873 1.15228 1.22532 1.00265 0.86111 0.92123 1.19714 0.90826 0.96397 1.08241 1.20400 1.01066 0.96095 0.95393 1.20397 0.78100 0.80195 0.90840 1.90718 1.47468 1.56154 1.46473 1.45383 1.52903 1.27960 1.08541 1.21868 1.02409 0.92999 0.83827 0.85228 1.25071 1.01860 0.93795 1.00006 0.87606 1.21701 0.89089 0.98030 0.88138 1.45127 1.05077 1.30199 1.51219 1.19032 1.05739 0.95384 1.15314 0.90479 1.24911 0.99383 0.96900 0.99132 1.69912 1.19591 1.21022 1.45522 0.86037 0.78949 0.81244 0.79454 1.20369 1.21671 1.21614 1.21054 0.98599 0.90022 0.84385 1.24608 0.90457 1.02844 1.02210 0.88113 0.92209 0.87790 0.92443 0.84411 0.82593 0.82191 0.87598 0.87585 0.76807 0.95243 0.93176 0.93567 0.95626 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.84 101.05 0.99 1.17 16 2 O -0.31 -3.27 9.77 -18.92 -0.18 -3.46 16 3 C 0.18 2.07 6.70 -38.82 -0.26 1.81 16 4 C -0.26 -2.49 9.11 -39.30 -0.36 -2.85 16 5 C 0.13 1.31 11.17 -17.60 -0.20 1.12 16 6 N -0.51 -6.04 10.36 -13.33 -0.14 -6.18 16 7 C 0.15 1.63 10.84 -17.59 -0.19 1.44 16 8 C -0.15 -1.69 4.40 -104.33 -0.46 -2.15 16 9 C -0.09 -0.86 5.60 -29.03 -0.16 -1.03 16 10 C 0.52 7.26 7.82 -10.99 -0.09 7.17 16 11 O -0.53 -9.90 15.60 5.56 0.09 -9.82 16 12 N -0.70 -9.30 5.56 -53.81 -0.30 -9.60 16 13 C 0.09 1.62 5.93 -67.93 -0.40 1.22 16 14 H 0.13 2.57 7.40 -51.93 -0.38 2.19 16 15 C -0.19 -3.33 7.34 -87.42 -0.64 -3.97 16 16 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 17 C 0.16 3.38 7.10 -0.54 0.00 3.38 16 18 N -0.59 -15.33 3.38 -166.70 -0.56 -15.89 16 19 C -0.23 -6.33 10.35 -15.06 -0.16 -6.49 16 20 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 21 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 22 N -0.91 -26.89 10.88 55.49 0.60 -26.28 16 23 Si 0.91 21.94 29.56 -169.99 -5.03 16.92 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 27 C 0.19 4.50 5.69 -2.41 -0.01 4.48 16 28 C -0.18 -3.40 6.97 -89.29 -0.62 -4.02 16 29 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.06 0.38 7.71 -51.93 -0.40 -0.02 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.27 7.71 -51.93 -0.40 -0.13 16 33 H 0.14 0.92 6.47 -52.49 -0.34 0.58 16 34 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.11 0.70 8.06 -51.93 -0.42 0.29 16 37 H 0.11 0.88 7.78 -51.93 -0.40 0.47 16 38 H 0.40 3.99 8.83 -40.82 -0.36 3.63 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.09 2.42 6.53 -51.93 -0.34 2.09 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -35.43 362.31 -8.69 -44.12 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.98 Total: 3.72 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.65 Total: 1.01 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.40 Total: -57.95 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.10 Total: -13.27 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.43 -8.69 -44.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960542784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.147 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds