Wall clock time and date at job start Tue Mar 31 2020 11:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35738 * 117.00263 * 2 1 4 4 C 1.39277 * 120.84694 * 359.97438 * 3 2 1 5 5 C 1.37955 * 119.09161 * 180.02562 * 4 3 2 6 6 N 1.31968 * 120.82696 * 359.95123 * 5 4 3 7 7 C 1.31956 * 121.86135 * 0.02762 * 6 5 4 8 8 C 1.37991 * 120.82016 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.45071 * 179.72467 * 8 7 6 10 10 C 1.50697 * 109.46859 * 265.00067 * 9 8 7 11 11 O 1.21275 * 120.00281 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99613 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99948 * 180.02562 * 12 10 9 14 14 H 1.08997 * 115.51640 * 9.41192 * 13 12 10 15 15 C 1.53005 * 117.44108 * 224.00100 * 13 12 10 16 16 H 1.08993 * 119.54311 * 4.11348 * 15 13 12 17 17 C 1.57745 * 116.08266 * 161.58033 * 15 13 12 18 18 N 1.48148 * 104.61972 * 87.39988 * 17 15 13 19 19 C 1.36929 * 127.83281 * 139.76365 * 18 17 15 20 20 H 1.08002 * 120.00634 * 344.35700 * 19 18 17 21 21 C 1.38811 * 119.99939 * 164.35696 * 19 18 17 22 22 N 1.31626 * 120.00091 * 350.57224 * 21 19 18 23 23 Si 1.86796 * 120.00267 * 170.56969 * 21 19 18 24 24 H 1.48500 * 109.47373 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47289 * 120.00083 * 23 21 19 26 26 H 1.48502 * 109.47282 * 239.99998 * 23 21 19 27 27 C 1.48144 * 104.32539 * 319.76513 * 18 17 15 28 28 C 1.53003 * 117.44480 * 154.82903 * 13 12 10 29 29 H 1.08997 * 119.53591 * 355.88467 * 28 13 12 30 30 H 1.08999 * 109.46601 * 59.99881 * 1 2 3 31 31 H 1.08994 * 109.47154 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47081 * 300.00340 * 1 2 3 33 33 H 1.07997 * 120.45492 * 0.04195 * 4 3 2 34 34 H 1.08002 * 119.58620 * 179.97438 * 5 4 3 35 35 H 1.07997 * 119.58660 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46869 * 25.00170 * 9 8 7 37 37 H 1.09000 * 109.46400 * 145.00023 * 9 8 7 38 38 H 0.97000 * 120.00089 * 359.97438 * 12 10 9 39 39 H 1.08998 * 110.95651 * 328.33597 * 17 15 13 40 40 H 1.08994 * 109.94830 * 205.96478 * 17 15 13 41 41 H 0.96992 * 120.00259 * 179.97438 * 22 21 19 42 42 H 1.09001 * 110.40747 * 280.80379 * 27 18 17 43 43 H 1.08996 * 110.50753 * 158.41615 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3886 -0.0005 5 6 1.9678 3.5980 -0.0011 6 7 3.2867 3.6456 -0.0001 7 6 4.0232 2.5508 0.0009 8 6 3.4346 1.3027 0.0014 9 6 4.2839 0.0577 -0.0037 10 6 4.4590 -0.4249 -1.4205 11 8 3.9445 0.1819 -2.3359 12 7 5.1866 -1.5316 -1.6703 13 6 5.3573 -2.0006 -3.0476 14 1 5.0048 -1.3199 -3.8225 15 6 5.2064 -3.5012 -3.3054 16 1 4.9142 -4.1602 -2.4879 17 6 4.9454 -3.9250 -4.8022 18 7 6.2972 -4.0678 -5.3915 19 6 6.7370 -5.0298 -6.2610 20 1 6.1643 -5.9350 -6.3998 21 6 7.9189 -4.8418 -6.9642 22 7 8.5198 -3.6709 -6.9403 23 14 8.6568 -6.2503 -7.9444 24 1 7.7949 -7.4520 -7.8099 25 1 8.7467 -5.8639 -9.3755 26 1 10.0154 -6.5547 -7.4277 27 6 7.0650 -2.9339 -4.8265 28 6 6.5981 -2.8403 -3.3579 29 1 7.3426 -3.0070 -2.5794 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2246 2.3566 -0.0003 34 1 1.4010 4.5173 -0.0019 35 1 5.1001 2.6326 0.0012 36 1 5.2597 0.2818 0.4271 37 1 3.7954 -0.7176 0.5866 38 1 5.5978 -2.0172 -0.9381 39 1 4.3792 -3.1585 -5.3314 40 1 4.4152 -4.8768 -4.8322 41 1 9.3458 -3.5396 -7.4314 42 1 6.8298 -2.0125 -5.3594 43 1 8.1350 -3.1364 -4.8730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960542784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:56 Heat of formation + Delta-G solvation = 2.942674 kcal Electronic energy + Delta-G solvation = -25664.281860 eV Core-core repulsion = 21903.949400 eV Total energy + Delta-G solvation = -3760.332460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.82878 -40.89348 -39.64511 -39.13153 -36.07785 -34.50264 -34.12557 -32.19853 -32.12048 -29.20186 -28.78800 -28.37133 -27.44386 -24.21942 -23.88562 -23.09579 -21.96308 -21.39282 -20.89075 -19.31262 -18.86125 -18.17393 -18.06358 -17.68418 -16.77804 -16.73463 -16.20376 -16.05931 -15.75392 -15.57088 -15.24206 -15.13941 -14.85013 -14.64160 -14.43321 -14.14355 -13.76535 -13.41218 -13.34425 -13.14045 -12.87994 -12.83420 -12.73824 -12.47727 -12.12850 -12.07710 -11.98303 -11.88128 -11.67706 -11.07031 -10.86832 -10.71765 -10.51266 -10.09774 -9.72472 -9.67408 -8.94144 -7.93060 -5.30205 0.08940 0.36336 1.46799 1.47463 1.58782 1.60200 2.03404 2.19036 2.47892 2.85166 2.87959 3.28004 3.47867 3.59984 3.66867 3.82620 3.85401 3.87093 3.96061 4.02284 4.07819 4.22245 4.30898 4.34361 4.34763 4.44714 4.52098 4.65313 4.69559 4.75442 4.83554 4.91715 4.96329 4.98065 5.08835 5.27198 5.41169 5.44931 5.56190 5.59304 5.63578 6.14990 6.20841 6.58095 6.98821 7.04243 7.29132 7.65624 8.44399 9.21181 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028631 B = 0.002377 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.737263 B =11778.985737 C =12238.210352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.167 3.833 4 C -0.264 4.264 5 C 0.124 3.876 6 N -0.535 5.535 7 C 0.132 3.868 8 C -0.168 4.168 9 C -0.077 4.077 10 C 0.518 3.482 11 O -0.583 6.583 12 N -0.683 5.683 13 C 0.114 3.886 14 H 0.098 0.902 15 C -0.165 4.165 16 H 0.142 0.858 17 C 0.148 3.852 18 N -0.617 5.617 19 C -0.241 4.241 20 H 0.083 0.917 21 C -0.064 4.064 22 N -0.948 5.948 23 Si 0.983 3.017 24 H -0.263 1.263 25 H -0.293 1.293 26 H -0.288 1.288 27 C 0.189 3.811 28 C -0.178 4.178 29 H 0.128 0.872 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.183 0.817 35 H 0.176 0.824 36 H 0.142 0.858 37 H 0.127 0.873 38 H 0.420 0.580 39 H 0.018 0.982 40 H 0.062 0.938 41 H 0.250 0.750 42 H -0.008 1.008 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.557 8.644 22.404 28.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.234 6.234 3 C 0.113 3.887 4 C -0.284 4.284 5 C -0.032 4.032 6 N -0.247 5.247 7 C -0.023 4.023 8 C -0.171 4.171 9 C -0.117 4.117 10 C 0.306 3.694 11 O -0.463 6.463 12 N -0.334 5.334 13 C 0.007 3.993 14 H 0.116 0.884 15 C -0.186 4.186 16 H 0.159 0.841 17 C 0.022 3.978 18 N -0.340 5.340 19 C -0.369 4.369 20 H 0.101 0.899 21 C -0.257 4.257 22 N -0.596 5.596 23 Si 0.811 3.189 24 H -0.187 1.187 25 H -0.220 1.220 26 H -0.215 1.215 27 C 0.063 3.937 28 C -0.199 4.199 29 H 0.146 0.854 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.096 0.904 33 H 0.181 0.819 34 H 0.200 0.800 35 H 0.193 0.807 36 H 0.160 0.840 37 H 0.145 0.855 38 H 0.257 0.743 39 H 0.035 0.965 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.010 0.990 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.298 9.572 21.591 27.608 hybrid contribution 0.110 -1.348 -0.850 1.597 sum -14.189 8.224 20.741 26.441 Atomic orbital electron populations 1.23413 0.75937 1.05861 1.02524 1.86031 1.23862 1.26156 1.87384 1.19405 0.92308 0.85473 0.91487 1.22472 1.02810 0.92552 1.10590 1.23046 0.90061 0.98291 0.91776 1.67746 1.08211 1.32501 1.16247 1.22858 1.01158 0.86191 0.92129 1.19950 0.91409 0.96946 1.08784 1.20431 1.03017 0.95918 0.92293 1.21203 0.76703 0.79307 0.92165 1.90707 1.49476 1.57614 1.48468 1.45181 1.52869 1.28070 1.07257 1.21356 1.00402 0.92085 0.85476 0.88382 1.24983 1.00420 0.94757 0.98469 0.84052 1.21835 0.87270 0.98448 0.90230 1.45428 1.07079 1.30007 1.51533 1.19434 1.05915 0.96040 1.15532 0.89891 1.25795 0.99978 0.99355 1.00623 1.70113 1.19819 1.23071 1.46616 0.84953 0.78001 0.78619 0.77357 1.18731 1.22027 1.21513 1.20789 0.96880 0.88345 0.87708 1.24286 0.91635 1.04757 0.99246 0.85412 0.92261 0.86332 0.90408 0.81861 0.79981 0.80737 0.84046 0.85534 0.74262 0.96454 0.91945 0.94064 0.98968 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.84 113.37 1.12 1.30 16 2 O -0.32 -6.35 9.77 -90.62 -0.89 -7.23 16 3 C 0.17 3.53 6.70 22.76 0.15 3.68 16 4 C -0.26 -4.59 9.11 22.45 0.20 -4.39 16 5 C 0.12 2.29 11.17 84.61 0.95 3.24 16 6 N -0.53 -12.34 10.36 -196.08 -2.03 -14.37 16 7 C 0.13 2.84 10.84 84.62 0.92 3.75 16 8 C -0.17 -3.56 4.40 -19.68 -0.09 -3.64 16 9 C -0.08 -1.28 5.60 29.10 0.16 -1.12 16 10 C 0.52 13.57 7.82 87.66 0.69 14.25 16 11 O -0.58 -21.65 15.60 -3.02 -0.05 -21.70 16 12 N -0.68 -16.41 5.56 -442.54 -2.46 -18.88 16 13 C 0.11 3.79 5.93 44.99 0.27 4.06 16 14 H 0.10 4.00 7.40 -2.39 -0.02 3.98 16 15 C -0.17 -5.59 7.34 -8.72 -0.06 -5.66 16 16 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 17 C 0.15 6.34 7.10 87.74 0.62 6.96 16 18 N -0.62 -32.48 3.38 -681.33 -2.30 -34.78 16 19 C -0.24 -13.62 10.35 84.03 0.87 -12.75 16 20 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 21 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 22 N -0.95 -57.74 10.88 21.65 0.24 -57.50 16 23 Si 0.98 45.63 29.56 68.60 2.03 47.66 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 27 C 0.19 9.49 5.69 86.53 0.49 9.98 16 28 C -0.18 -6.56 6.97 -9.93 -0.07 -6.63 16 29 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 30 H 0.06 0.66 7.71 -2.39 -0.02 0.64 16 31 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.54 7.71 -2.39 -0.02 0.52 16 33 H 0.16 1.80 6.47 -2.91 -0.02 1.78 16 34 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 35 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.14 1.34 8.06 -2.39 -0.02 1.32 16 37 H 0.13 1.63 7.78 -2.39 -0.02 1.62 16 38 H 0.42 6.69 8.83 -92.71 -0.82 5.87 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.06 3.33 6.53 -2.39 -0.02 3.31 16 Total: -1.00 -80.60 362.31 1.43 -79.18 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.22 Total: 17.77 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 6.67 Total: 9.86 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -6.56 Total: -125.53 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.93 Total: -28.93 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -80.60 1.43 -79.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960542784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.118 kcal (2) G-P(sol) polarization free energy of solvation -80.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds