Wall clock time and date at job start Tue Mar 31 2020 11:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 117.00162 * 2 1 4 4 C 1.39142 * 120.47187 * 359.95908 * 3 2 1 5 5 C 1.38541 * 118.37296 * 180.02562 * 4 3 2 6 6 C 1.38246 * 119.22534 * 359.97438 * 5 4 3 7 7 N 1.31856 * 120.88217 * 0.02562 * 6 5 4 8 8 C 1.31833 * 121.78238 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.65884 * 179.72375 * 8 7 6 10 10 C 1.50700 * 109.47011 * 89.99920 * 9 8 7 11 11 O 1.21278 * 119.99922 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99869 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99909 * 180.02562 * 12 10 9 14 14 H 1.08993 * 115.51383 * 350.57764 * 13 12 10 15 15 C 1.53000 * 117.43945 * 205.16789 * 13 12 10 16 16 H 1.09003 * 119.54274 * 5.70480 * 15 13 12 17 17 C 1.54388 * 118.12187 * 160.80869 * 15 13 12 18 18 N 1.48143 * 104.61820 * 87.18706 * 17 15 13 19 19 C 1.36938 * 127.83986 * 140.41604 * 18 17 15 20 20 H 1.07997 * 120.00319 * 195.57477 * 19 18 17 21 21 C 1.38817 * 119.99783 * 15.56943 * 19 18 17 22 22 N 1.31621 * 120.00069 * 9.09983 * 21 19 18 23 23 Si 1.86799 * 120.00058 * 189.09728 * 21 19 18 24 24 H 1.48509 * 109.46851 * 90.00310 * 23 21 19 25 25 H 1.48499 * 109.47206 * 210.00050 * 23 21 19 26 26 H 1.48502 * 109.47171 * 330.00416 * 23 21 19 27 27 C 1.48147 * 104.32711 * 320.41363 * 18 17 15 28 28 C 1.52997 * 117.44303 * 135.99829 * 13 12 10 29 29 H 1.09004 * 119.54218 * 355.87593 * 28 13 12 30 30 H 1.08998 * 109.47241 * 60.00437 * 1 2 3 31 31 H 1.09001 * 109.46817 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47178 * 299.99682 * 1 2 3 33 33 H 1.08001 * 120.81342 * 0.03931 * 4 3 2 34 34 H 1.08001 * 120.38291 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.56217 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.46986 * 210.00166 * 9 8 7 37 37 H 1.09005 * 109.46752 * 329.99952 * 9 8 7 38 38 H 0.97001 * 120.00131 * 359.97438 * 12 10 9 39 39 H 1.09002 * 110.40366 * 205.97263 * 17 15 13 40 40 H 1.08997 * 110.40849 * 328.40055 * 17 15 13 41 41 H 0.97001 * 120.00114 * 179.97438 * 22 21 19 42 42 H 1.08997 * 110.41240 * 158.36745 * 27 18 17 43 43 H 1.08996 * 110.40458 * 280.68813 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2979 2.3841 -0.0009 5 6 1.9717 3.5946 -0.0014 6 6 3.3541 3.5976 -0.0005 7 7 4.0334 2.4675 0.0004 8 6 3.4306 1.2950 0.0009 9 6 4.2542 0.0330 -0.0045 10 6 4.5345 -0.3900 1.4145 11 8 4.1071 0.2682 2.3391 12 7 5.2601 -1.4998 1.6560 13 6 5.5321 -1.9113 3.0355 14 1 5.2548 -1.1898 3.8040 15 6 6.7787 -2.7626 3.2845 16 1 7.4693 -2.9574 2.4639 17 6 7.3378 -2.8313 4.7220 18 7 6.5925 -3.9411 5.3604 19 6 7.0743 -4.8906 6.2215 20 1 6.4989 -5.7832 6.4180 21 6 8.3022 -4.7058 6.8420 22 7 8.9201 -3.5475 6.7467 23 14 9.0778 -6.1010 7.8122 24 1 9.9349 -6.9134 6.9118 25 1 9.9054 -5.5401 8.9102 26 1 8.0097 -6.9586 8.3858 27 6 5.2077 -3.7907 4.8559 28 6 5.3759 -3.3955 3.3724 29 1 5.0076 -4.0835 2.6114 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2184 2.3518 -0.0009 34 1 1.4233 4.5250 -0.0016 35 1 3.8849 4.5381 -0.0004 36 1 3.7054 -0.7569 -0.5175 37 1 5.1960 0.2160 -0.5219 38 1 5.6017 -2.0264 0.9165 39 1 8.4053 -3.0509 4.7044 40 1 7.1501 -1.8953 5.2479 41 1 9.7780 -3.4183 7.1805 42 1 4.6682 -4.7341 4.9394 43 1 4.6867 -3.0059 5.4042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961602589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:38 Heat of formation + Delta-G solvation = 28.975333 kcal Electronic energy + Delta-G solvation = -25649.413286 eV Core-core repulsion = 21890.209687 eV Total energy + Delta-G solvation = -3759.203599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.06237 -39.60277 -38.42842 -38.13200 -34.39681 -33.37973 -32.56614 -31.64758 -30.27510 -28.45356 -27.71214 -27.10183 -25.56462 -23.14363 -23.14125 -21.65353 -20.45201 -20.05000 -19.23888 -18.38490 -17.41014 -17.06268 -16.85419 -16.62081 -16.03364 -15.88673 -14.97985 -14.70600 -14.58167 -14.26741 -14.14071 -13.73652 -13.45697 -13.32529 -13.11076 -12.71015 -12.56582 -12.21002 -12.14430 -11.76467 -11.71318 -11.45884 -11.41255 -10.96249 -10.81516 -10.34481 -10.16497 -10.11373 -10.05676 -9.80532 -9.72501 -9.66053 -9.14837 -8.70091 -8.57670 -8.25604 -6.83941 -5.77012 -3.11348 0.85045 1.03826 2.75771 2.87474 3.13464 3.40204 3.45108 3.47431 3.64488 4.05436 4.31564 4.38927 4.43648 4.49591 4.67660 4.78164 4.84002 4.86755 5.01357 5.13890 5.15618 5.22359 5.25077 5.41973 5.44732 5.53660 5.61025 5.73485 5.82340 5.87986 5.95133 6.16751 6.21930 6.31279 6.57382 6.73626 6.87190 6.90731 6.94481 7.39142 7.56463 7.66695 7.74345 7.78053 8.23365 8.39046 9.13527 9.76212 10.53706 11.37353 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029061 B = 0.002368 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.247392 B =11821.746415 C =12294.711386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.093 3.907 4 C -0.166 4.166 5 C -0.134 4.134 6 C 0.063 3.937 7 N -0.438 5.438 8 C 0.128 3.872 9 C -0.086 4.086 10 C 0.526 3.474 11 O -0.533 6.533 12 N -0.698 5.698 13 C 0.098 3.902 14 H 0.130 0.870 15 C -0.180 4.180 16 H 0.103 0.897 17 C 0.185 3.815 18 N -0.593 5.593 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.156 3.844 28 C -0.183 4.183 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.399 0.601 39 H 0.091 0.909 40 H 0.025 0.975 41 H 0.255 0.745 42 H 0.051 0.949 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.848 10.812 -19.627 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.045 3.955 4 C -0.192 4.192 5 C -0.154 4.154 6 C -0.094 4.094 7 N -0.147 5.147 8 C -0.012 4.012 9 C -0.127 4.127 10 C 0.311 3.689 11 O -0.409 6.409 12 N -0.347 5.347 13 C -0.008 4.008 14 H 0.147 0.853 15 C -0.201 4.201 16 H 0.121 0.879 17 C 0.059 3.941 18 N -0.317 5.317 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.561 5.561 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.029 3.971 28 C -0.204 4.204 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.233 0.767 39 H 0.109 0.891 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -14.982 11.057 -18.756 26.429 hybrid contribution -0.625 -0.785 0.048 1.005 sum -15.607 10.272 -18.708 26.440 Atomic orbital electron populations 1.23118 0.78103 1.04440 1.01290 1.86106 1.21573 1.25888 1.88214 1.19831 0.93054 0.85236 0.97393 1.21655 1.00707 0.92133 1.04727 1.21972 0.95771 0.98202 0.99477 1.22605 0.91438 0.96302 0.99014 1.67448 1.40025 0.97511 1.09676 1.19902 0.87703 0.93372 1.00248 1.20445 1.01751 0.94592 0.95866 1.20209 0.77773 0.80237 0.90655 1.90711 1.50870 1.53367 1.45952 1.45322 1.54366 1.27003 1.08001 1.21812 1.01840 0.93394 0.83768 0.85259 1.24619 0.90320 1.02816 1.02344 0.87889 1.21064 0.98311 0.90394 0.84362 1.45179 1.02539 1.32232 1.51727 1.19001 1.02479 0.96591 1.17407 0.90526 1.24911 0.98979 0.96952 0.99495 1.69902 1.16858 1.21696 1.47653 0.86100 0.79157 0.81118 0.79262 1.21523 1.21658 1.20552 1.21123 0.88920 0.98074 0.88991 1.24345 1.01751 0.94381 0.99954 0.87967 0.92653 0.87804 0.92442 0.84324 0.84508 0.82381 0.86939 0.86908 0.76739 0.89067 0.95662 0.93531 0.93066 0.95524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.83 101.05 0.99 1.16 16 2 O -0.31 -3.26 9.55 -19.44 -0.19 -3.45 16 3 C 0.09 1.07 6.67 -39.07 -0.26 0.81 16 4 C -0.17 -1.53 9.14 -39.13 -0.36 -1.89 16 5 C -0.13 -1.15 10.11 -39.47 -0.40 -1.55 16 6 C 0.06 0.65 11.18 -17.54 -0.20 0.46 16 7 N -0.44 -5.77 10.27 -9.35 -0.10 -5.87 16 8 C 0.13 1.65 5.29 -82.42 -0.44 1.22 16 9 C -0.09 -0.98 5.78 -29.03 -0.17 -1.14 16 10 C 0.53 7.97 7.82 -10.99 -0.09 7.89 16 11 O -0.53 -10.48 15.60 5.56 0.09 -10.40 16 12 N -0.70 -9.85 5.56 -53.81 -0.30 -10.15 16 13 C 0.10 1.73 5.98 -67.93 -0.41 1.32 16 14 H 0.13 2.64 7.40 -51.93 -0.38 2.25 16 15 C -0.18 -3.48 7.05 -89.29 -0.63 -4.11 16 16 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 17 C 0.18 4.55 5.70 -2.41 -0.01 4.54 16 18 N -0.59 -15.52 3.38 -168.83 -0.57 -16.09 16 19 C -0.23 -6.39 10.35 -15.06 -0.16 -6.55 16 20 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 21 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 22 N -0.91 -27.16 10.86 55.49 0.60 -26.55 16 23 Si 0.91 22.12 29.56 -169.99 -5.03 17.10 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.16 3.39 7.04 -2.38 -0.02 3.37 16 28 C -0.18 -3.36 7.05 -89.27 -0.63 -3.99 16 29 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 30 H 0.05 0.25 7.70 -51.93 -0.40 -0.15 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.35 7.70 -51.93 -0.40 -0.05 16 33 H 0.14 0.88 6.45 -52.49 -0.34 0.54 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.11 1.01 7.52 -51.93 -0.39 0.62 16 37 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.40 4.29 8.83 -40.82 -0.36 3.93 16 39 H 0.09 2.48 6.51 -51.93 -0.34 2.14 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -35.88 361.86 -8.85 -44.73 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.96 Total: 3.96 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -2.85 Total: 1.27 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.36 Total: -58.67 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.10 Total: -13.85 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.88 -8.85 -44.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961602589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.707 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds