Wall clock time and date at job start Tue Mar 31 2020 11:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 117.00162 * 2 1 4 4 C 1.39142 * 120.47187 * 359.95908 * 3 2 1 5 5 C 1.38541 * 118.37296 * 180.02562 * 4 3 2 6 6 C 1.38246 * 119.22534 * 359.97438 * 5 4 3 7 7 N 1.31856 * 120.88217 * 0.02562 * 6 5 4 8 8 C 1.31833 * 121.78238 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.65884 * 179.72375 * 8 7 6 10 10 C 1.50700 * 109.47011 * 89.99920 * 9 8 7 11 11 O 1.21278 * 119.99922 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99869 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99909 * 180.02562 * 12 10 9 14 14 H 1.08993 * 115.51383 * 350.57764 * 13 12 10 15 15 C 1.53000 * 117.43945 * 205.16789 * 13 12 10 16 16 H 1.09003 * 119.54274 * 5.70480 * 15 13 12 17 17 C 1.54388 * 118.12187 * 160.80869 * 15 13 12 18 18 N 1.48143 * 104.61820 * 87.18706 * 17 15 13 19 19 C 1.36938 * 127.83986 * 140.41604 * 18 17 15 20 20 H 1.07997 * 120.00319 * 195.57477 * 19 18 17 21 21 C 1.38817 * 119.99783 * 15.56943 * 19 18 17 22 22 N 1.31621 * 120.00069 * 9.09983 * 21 19 18 23 23 Si 1.86799 * 120.00058 * 189.09728 * 21 19 18 24 24 H 1.48509 * 109.46851 * 90.00310 * 23 21 19 25 25 H 1.48499 * 109.47206 * 210.00050 * 23 21 19 26 26 H 1.48502 * 109.47171 * 330.00416 * 23 21 19 27 27 C 1.48147 * 104.32711 * 320.41363 * 18 17 15 28 28 C 1.52997 * 117.44303 * 135.99829 * 13 12 10 29 29 H 1.09004 * 119.54218 * 355.87593 * 28 13 12 30 30 H 1.08998 * 109.47241 * 60.00437 * 1 2 3 31 31 H 1.09001 * 109.46817 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47178 * 299.99682 * 1 2 3 33 33 H 1.08001 * 120.81342 * 0.03931 * 4 3 2 34 34 H 1.08001 * 120.38291 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.56217 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.46986 * 210.00166 * 9 8 7 37 37 H 1.09005 * 109.46752 * 329.99952 * 9 8 7 38 38 H 0.97001 * 120.00131 * 359.97438 * 12 10 9 39 39 H 1.09002 * 110.40366 * 205.97263 * 17 15 13 40 40 H 1.08997 * 110.40849 * 328.40055 * 17 15 13 41 41 H 0.97001 * 120.00114 * 179.97438 * 22 21 19 42 42 H 1.08997 * 110.41240 * 158.36745 * 27 18 17 43 43 H 1.08996 * 110.40458 * 280.68813 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2979 2.3841 -0.0009 5 6 1.9717 3.5946 -0.0014 6 6 3.3541 3.5976 -0.0005 7 7 4.0334 2.4675 0.0004 8 6 3.4306 1.2950 0.0009 9 6 4.2542 0.0330 -0.0045 10 6 4.5345 -0.3900 1.4145 11 8 4.1071 0.2682 2.3391 12 7 5.2601 -1.4998 1.6560 13 6 5.5321 -1.9113 3.0355 14 1 5.2548 -1.1898 3.8040 15 6 6.7787 -2.7626 3.2845 16 1 7.4693 -2.9574 2.4639 17 6 7.3378 -2.8313 4.7220 18 7 6.5925 -3.9411 5.3604 19 6 7.0743 -4.8906 6.2215 20 1 6.4989 -5.7832 6.4180 21 6 8.3022 -4.7058 6.8420 22 7 8.9201 -3.5475 6.7467 23 14 9.0778 -6.1010 7.8122 24 1 9.9349 -6.9134 6.9118 25 1 9.9054 -5.5401 8.9102 26 1 8.0097 -6.9586 8.3858 27 6 5.2077 -3.7907 4.8559 28 6 5.3759 -3.3955 3.3724 29 1 5.0076 -4.0835 2.6114 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2184 2.3518 -0.0009 34 1 1.4233 4.5250 -0.0016 35 1 3.8849 4.5381 -0.0004 36 1 3.7054 -0.7569 -0.5175 37 1 5.1960 0.2160 -0.5219 38 1 5.6017 -2.0264 0.9165 39 1 8.4053 -3.0509 4.7044 40 1 7.1501 -1.8953 5.2479 41 1 9.7780 -3.4183 7.1805 42 1 4.6682 -4.7341 4.9394 43 1 4.6867 -3.0059 5.4042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961602589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:37 Heat of formation + Delta-G solvation = 3.265662 kcal Electronic energy + Delta-G solvation = -25650.528141 eV Core-core repulsion = 21890.209687 eV Total energy + Delta-G solvation = -3760.318454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.84961 -40.95477 -39.71590 -39.04718 -36.07657 -34.44757 -34.03259 -32.50285 -32.01822 -29.34984 -28.92724 -28.29946 -27.49505 -24.26496 -23.84137 -23.13664 -21.94757 -21.44061 -20.89176 -19.06934 -18.87533 -18.17319 -18.12284 -17.82233 -16.98097 -16.71455 -16.67441 -16.05741 -15.65335 -15.32043 -15.25673 -14.92411 -14.77488 -14.64933 -14.32058 -14.08659 -13.75712 -13.40440 -13.32036 -13.16010 -12.90477 -12.88647 -12.70882 -12.34342 -12.30923 -12.12964 -12.03150 -11.87566 -11.66419 -11.11907 -10.86310 -10.72585 -10.61539 -10.56151 -9.69814 -9.32809 -8.93833 -7.92145 -5.29687 0.10443 0.30837 1.46778 1.49121 1.56655 1.58240 1.97295 2.25412 2.48302 2.82268 2.85498 3.27663 3.30514 3.59026 3.64196 3.83192 3.83986 3.86184 3.93783 4.09195 4.13666 4.26740 4.35422 4.37513 4.38020 4.47885 4.51324 4.52332 4.71254 4.76281 4.85138 4.93026 4.97553 5.05236 5.12736 5.27833 5.41229 5.44614 5.51414 5.54691 5.63390 6.15477 6.23232 6.54476 6.99074 7.01677 7.24948 7.66082 8.44870 9.21874 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029061 B = 0.002368 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.247392 B =11821.746415 C =12294.711386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.079 3.921 4 C -0.170 4.170 5 C -0.126 4.126 6 C 0.045 3.955 7 N -0.470 5.470 8 C 0.092 3.908 9 C -0.075 4.075 10 C 0.524 3.476 11 O -0.583 6.583 12 N -0.682 5.682 13 C 0.116 3.884 14 H 0.098 0.902 15 C -0.178 4.178 16 H 0.130 0.870 17 C 0.188 3.812 18 N -0.616 5.616 19 C -0.242 4.242 20 H 0.084 0.916 21 C -0.064 4.064 22 N -0.949 5.949 23 Si 0.984 3.016 24 H -0.282 1.282 25 H -0.295 1.295 26 H -0.266 1.266 27 C 0.148 3.852 28 C -0.163 4.163 29 H 0.138 0.862 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.058 0.942 33 H 0.167 0.833 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.420 0.580 39 H 0.060 0.940 40 H -0.008 1.008 41 H 0.250 0.750 42 H 0.065 0.935 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.598 10.218 -21.800 29.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.031 3.969 4 C -0.196 4.196 5 C -0.146 4.146 6 C -0.112 4.112 7 N -0.180 5.180 8 C -0.047 4.047 9 C -0.115 4.115 10 C 0.312 3.688 11 O -0.462 6.462 12 N -0.332 5.332 13 C 0.008 3.992 14 H 0.116 0.884 15 C -0.199 4.199 16 H 0.147 0.853 17 C 0.062 3.938 18 N -0.341 5.341 19 C -0.370 4.370 20 H 0.102 0.898 21 C -0.258 4.258 22 N -0.597 5.597 23 Si 0.812 3.188 24 H -0.209 1.209 25 H -0.222 1.222 26 H -0.191 1.191 27 C 0.022 3.978 28 C -0.184 4.184 29 H 0.156 0.844 30 H 0.094 0.906 31 H 0.137 0.863 32 H 0.077 0.923 33 H 0.185 0.815 34 H 0.190 0.810 35 H 0.196 0.804 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.258 0.742 39 H 0.079 0.921 40 H 0.010 0.990 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -16.758 10.432 -20.987 28.812 hybrid contribution -0.206 -0.489 0.752 0.920 sum -16.964 9.943 -20.235 28.216 Atomic orbital electron populations 1.23399 0.76198 1.05863 1.02342 1.86061 1.23616 1.25782 1.88198 1.19997 0.93078 0.86292 0.97525 1.22078 1.02187 0.91647 1.03697 1.22383 0.95283 0.99531 0.97382 1.23119 0.92724 0.96430 0.98973 1.67406 1.41356 0.98428 1.10777 1.20131 0.88770 0.93684 1.02123 1.20452 1.03002 0.95073 0.92984 1.20952 0.76546 0.79397 0.91863 1.90690 1.52822 1.54868 1.47840 1.45119 1.54074 1.27133 1.06897 1.21318 1.00142 0.92471 0.85253 0.88395 1.24315 0.91206 1.04665 0.99716 0.85264 1.20796 0.96877 0.88700 0.87427 1.45487 1.04558 1.32012 1.51998 1.19423 1.02771 0.97241 1.17574 0.89804 1.25812 0.99613 0.99397 1.00977 1.70112 1.16979 1.23785 1.48833 0.84999 0.78202 0.78103 0.77521 1.20899 1.22203 1.19097 1.21262 0.86989 0.98526 0.90985 1.24262 1.00394 0.95257 0.98448 0.84386 0.90584 0.86333 0.92319 0.81519 0.80953 0.80357 0.84446 0.85056 0.74223 0.92137 0.99022 0.94074 0.91625 0.96718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.83 113.37 1.11 1.29 16 2 O -0.32 -6.40 9.55 -92.47 -0.88 -7.29 16 3 C 0.08 1.73 6.67 22.60 0.15 1.88 16 4 C -0.17 -2.79 9.14 22.56 0.21 -2.58 16 5 C -0.13 -1.88 10.11 22.34 0.23 -1.66 16 6 C 0.04 0.87 11.18 84.69 0.95 1.82 16 7 N -0.47 -12.22 10.27 -183.50 -1.88 -14.11 16 8 C 0.09 2.32 5.29 42.67 0.23 2.54 16 9 C -0.08 -1.60 5.78 29.10 0.17 -1.43 16 10 C 0.52 15.50 7.82 87.66 0.69 16.18 16 11 O -0.58 -23.31 15.60 -3.02 -0.05 -23.36 16 12 N -0.68 -18.06 5.56 -442.54 -2.46 -20.52 16 13 C 0.12 4.03 5.98 44.99 0.27 4.30 16 14 H 0.10 4.14 7.40 -2.39 -0.02 4.13 16 15 C -0.18 -6.79 7.05 -9.93 -0.07 -6.86 16 16 H 0.13 4.28 8.14 -2.39 -0.02 4.26 16 17 C 0.19 9.64 5.70 86.53 0.49 10.14 16 18 N -0.62 -32.89 3.38 -688.06 -2.32 -35.22 16 19 C -0.24 -13.79 10.35 84.03 0.87 -12.92 16 20 H 0.08 4.54 7.84 -2.91 -0.02 4.51 16 21 C -0.06 -3.72 5.40 84.86 0.46 -3.26 16 22 N -0.95 -58.39 10.86 21.65 0.24 -58.15 16 23 Si 0.98 45.99 29.56 68.60 2.03 48.02 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 27 C 0.15 6.43 7.04 86.55 0.61 7.04 16 28 C -0.16 -5.70 7.05 -9.92 -0.07 -5.77 16 29 H 0.14 3.94 8.14 -2.39 -0.02 3.92 16 30 H 0.08 0.49 7.70 -2.39 -0.02 0.47 16 31 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.61 7.70 -2.39 -0.02 0.59 16 33 H 0.17 1.61 6.45 -2.91 -0.02 1.59 16 34 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.18 2.44 8.06 -2.91 -0.02 2.41 16 36 H 0.14 2.16 7.52 -2.39 -0.02 2.14 16 37 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.42 7.70 8.83 -92.71 -0.82 6.88 16 39 H 0.06 3.45 6.51 -2.39 -0.02 3.43 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -81.96 361.86 1.17 -80.80 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.22 Total: 19.11 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 6.28 Total: 10.71 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -6.44 Total: -128.00 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.93 Total: -30.64 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -81.96 1.17 -80.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961602589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.061 kcal (2) G-P(sol) polarization free energy of solvation -81.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds