Wall clock time and date at job start Tue Mar 31 2020 11:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35426 * 116.99614 * 2 1 4 4 N 1.32232 * 119.80602 * 0.02562 * 3 2 1 5 5 C 1.31876 * 121.80439 * 179.97438 * 4 3 2 6 6 C 1.38364 * 121.18385 * 359.97438 * 5 4 3 7 7 C 1.38332 * 119.45734 * 359.74457 * 6 5 4 8 8 C 1.39989 * 118.35037 * 0.49545 * 7 6 5 9 9 C 1.47526 * 120.59707 * 179.77862 * 8 7 6 10 10 O 1.21592 * 119.99855 * 179.71958 * 9 8 7 11 11 N 1.34771 * 119.99885 * 359.72578 * 9 8 7 12 12 C 1.46505 * 119.99875 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47203 * 179.97438 * 12 11 9 14 14 H 1.09004 * 115.51602 * 330.41120 * 13 12 11 15 15 C 1.52997 * 117.44448 * 185.00000 * 13 12 11 16 16 H 1.08998 * 119.53736 * 4.10779 * 15 13 12 17 17 C 1.54384 * 118.12809 * 160.81017 * 15 13 12 18 18 N 1.48147 * 104.62345 * 87.18511 * 17 15 13 19 19 C 1.36937 * 127.83809 * 140.39531 * 18 17 15 20 20 H 1.08002 * 119.99238 * 195.59853 * 19 18 17 21 21 C 1.38810 * 119.99994 * 15.59663 * 19 18 17 22 22 N 1.31620 * 119.99862 * 9.10173 * 21 19 18 23 23 Si 1.86797 * 119.99935 * 189.09597 * 21 19 18 24 24 H 1.48500 * 109.47270 * 60.00035 * 23 21 19 25 25 H 1.48492 * 109.47152 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47148 * 300.00123 * 23 21 19 27 27 C 1.48148 * 104.31933 * 320.41763 * 18 17 15 28 28 C 1.52995 * 117.44490 * 115.75519 * 13 12 11 29 29 H 1.09002 * 119.54474 * 355.88287 * 28 13 12 30 30 H 1.08997 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47179 * 299.99918 * 1 2 3 32 32 H 1.09002 * 109.46998 * 59.99766 * 1 2 3 33 33 H 1.07995 * 119.41164 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.27019 * 180.02562 * 6 5 4 35 35 H 1.08000 * 120.82464 * 180.25338 * 7 6 5 36 36 H 0.96996 * 120.00130 * 359.97438 * 11 9 8 37 37 H 1.08995 * 109.47313 * 59.99447 * 12 11 9 38 38 H 1.09006 * 109.46783 * 299.99717 * 12 11 9 39 39 H 1.09001 * 110.40814 * 205.97275 * 17 15 13 40 40 H 1.09010 * 110.40399 * 328.39988 * 17 15 13 41 41 H 0.96999 * 119.99692 * 180.02562 * 22 21 19 42 42 H 1.09000 * 110.41069 * 280.79665 * 27 18 17 43 43 H 1.09009 * 110.50408 * 158.41480 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3198 2.3132 0.0005 5 6 1.8770 3.5084 0.0010 6 6 3.2526 3.6575 0.0016 7 6 4.0587 2.5334 0.0070 8 6 3.4450 1.2752 0.0011 9 6 4.2570 0.0436 0.0015 10 8 3.7125 -1.0436 0.0015 11 7 5.6024 0.1235 0.0020 12 6 6.4088 -1.0997 0.0019 13 6 7.8938 -0.7314 0.0020 14 1 8.1437 0.2119 -0.4836 15 6 8.9037 -1.8746 -0.1165 16 1 8.5468 -2.8939 -0.2638 17 6 10.3403 -1.5328 -0.5669 18 7 11.0524 -1.1864 0.6852 19 6 12.3349 -1.5104 1.0394 20 1 12.6505 -1.4183 2.0682 21 6 13.2291 -1.9572 0.0763 22 7 12.9059 -1.9007 -1.1984 23 14 14.8910 -2.6385 0.5893 24 1 14.6922 -3.8182 1.4691 25 1 15.6539 -3.0441 -0.6184 26 1 15.6483 -1.5943 1.3251 27 6 10.0620 -0.4103 1.4673 28 6 8.7202 -1.1345 1.2248 29 1 8.2266 -1.6025 2.0766 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.2485 4.3866 0.0010 34 1 3.6934 4.6435 0.0024 35 1 5.1349 2.6241 0.0116 36 1 6.0367 0.9908 0.0018 37 1 6.1801 -1.6855 -0.8883 38 1 6.1795 -1.6861 0.8917 39 1 10.8053 -2.3966 -1.0420 40 1 10.3328 -0.6816 -1.2478 41 1 13.5307 -2.2133 -1.8713 42 1 10.0109 0.6161 1.1041 43 1 10.3160 -0.4255 2.5273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978648975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:21 Heat of formation + Delta-G solvation = 31.078695 kcal Electronic energy + Delta-G solvation = -25367.417889 eV Core-core repulsion = 21608.305499 eV Total energy + Delta-G solvation = -3759.112390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.19050 -39.43496 -38.58528 -38.17327 -34.97134 -33.56281 -32.83030 -31.24432 -30.75589 -27.82473 -27.24454 -27.10325 -25.28359 -24.26260 -23.17316 -21.18972 -20.93874 -19.93609 -19.26268 -18.80871 -17.72321 -17.41514 -16.81835 -16.37345 -15.75675 -15.44863 -15.15795 -14.93651 -14.59495 -14.36068 -14.19125 -13.86725 -13.55665 -13.36758 -13.02337 -12.93824 -12.74727 -12.63743 -12.03870 -11.84274 -11.52327 -11.26247 -11.11747 -10.82571 -10.66582 -10.40012 -10.35431 -10.30813 -10.16970 -9.87700 -9.74290 -9.41009 -9.13720 -9.00397 -8.81490 -8.64107 -6.88015 -5.80873 -3.15240 0.33374 0.85986 2.73893 2.75658 3.02296 3.38050 3.42819 3.43974 3.53144 3.88049 4.13524 4.33681 4.43621 4.45992 4.60733 4.79649 4.88863 5.01692 5.04848 5.06955 5.29682 5.35192 5.38536 5.41934 5.44954 5.51089 5.63683 5.79581 5.89417 5.91664 5.92583 5.97494 6.22258 6.35513 6.55257 6.65089 6.69943 6.90453 6.91017 7.32739 7.34877 7.48183 7.51908 7.70573 8.17339 8.20051 9.09932 9.72764 10.49790 11.33404 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032747 B = 0.002168 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.823659 B =12911.506347 C =13395.972890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.270 6.270 3 C 0.371 3.629 4 N -0.547 5.547 5 C 0.165 3.835 6 C -0.220 4.220 7 C -0.008 4.008 8 C -0.208 4.208 9 C 0.561 3.439 10 O -0.519 6.519 11 N -0.721 5.721 12 C 0.157 3.843 13 C -0.150 4.150 14 H 0.102 0.898 15 C -0.161 4.161 16 H 0.104 0.896 17 C 0.184 3.816 18 N -0.594 5.594 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.154 3.846 28 C -0.172 4.172 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.398 0.602 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.023 0.977 41 H 0.255 0.745 42 H 0.023 0.977 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.100 11.131 1.513 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.174 6.174 3 C 0.191 3.809 4 N -0.271 5.271 5 C 0.008 3.992 6 C -0.240 4.240 7 C -0.034 4.034 8 C -0.214 4.214 9 C 0.347 3.653 10 O -0.395 6.395 11 N -0.374 5.374 12 C 0.034 3.966 13 C -0.169 4.169 14 H 0.120 0.880 15 C -0.181 4.181 16 H 0.122 0.878 17 C 0.058 3.942 18 N -0.318 5.318 19 C -0.356 4.356 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.562 5.562 23 Si 0.743 3.257 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.210 1.210 27 C 0.028 3.972 28 C -0.192 4.192 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.182 0.818 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.041 0.959 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.011 9.832 1.423 25.985 hybrid contribution 1.672 0.382 0.223 1.730 sum -22.338 10.214 1.646 24.618 Atomic orbital electron populations 1.22964 0.77493 1.03382 1.02245 1.86546 1.22355 1.22975 1.85532 1.19878 0.88150 0.85151 0.87724 1.67481 1.40382 0.98705 1.20564 1.22674 0.93129 0.93737 0.89703 1.21956 0.94729 1.00028 1.07329 1.21708 1.00874 0.90523 0.90258 1.20075 0.91653 0.95122 1.14556 1.17746 0.82001 0.88285 0.77298 1.90838 1.71655 1.28358 1.48648 1.45905 1.05559 1.10375 1.75531 1.20882 0.87714 0.85759 1.02283 1.22527 0.90477 1.00690 1.03251 0.87958 1.24236 0.97390 0.95451 1.01065 0.87841 1.21066 0.84544 1.00004 0.88575 1.45198 1.10053 1.59724 1.16804 1.18950 0.84966 1.38537 0.93153 0.90641 1.24898 0.98142 1.02093 0.95149 1.69886 1.36195 1.51165 0.98964 0.86186 0.83284 0.79029 0.77180 1.21058 1.21535 1.20994 1.21136 0.86927 0.93174 0.95988 1.24005 0.98869 1.04869 0.91429 0.87894 0.88300 0.92251 0.92251 0.81831 0.83710 0.83566 0.76661 0.90961 0.91275 0.89174 0.95872 0.93489 0.95890 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.38 101.05 1.05 1.35 16 2 O -0.27 -3.57 8.58 -39.74 -0.34 -3.91 16 3 C 0.37 4.53 7.51 -16.61 -0.12 4.41 16 4 N -0.55 -5.57 9.21 -12.98 -0.12 -5.69 16 5 C 0.16 1.16 11.17 -17.49 -0.20 0.97 16 6 C -0.22 -1.37 10.09 -39.50 -0.40 -1.77 16 7 C -0.01 -0.06 9.64 -38.89 -0.37 -0.44 16 8 C -0.21 -2.39 5.90 -104.68 -0.62 -3.01 16 9 C 0.56 7.75 7.77 -12.48 -0.10 7.66 16 10 O -0.52 -9.12 15.19 -16.49 -0.25 -9.37 16 11 N -0.72 -8.57 5.51 -61.35 -0.34 -8.91 16 12 C 0.16 2.13 5.95 -4.04 -0.02 2.11 16 13 C -0.15 -2.26 5.39 -90.63 -0.49 -2.74 16 14 H 0.10 1.50 8.04 -51.93 -0.42 1.08 16 15 C -0.16 -3.00 6.85 -89.22 -0.61 -3.61 16 16 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 17 C 0.18 4.35 5.70 -2.41 -0.01 4.34 16 18 N -0.59 -15.09 3.38 -168.85 -0.57 -15.66 16 19 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 20 H 0.08 2.02 7.85 -52.49 -0.41 1.60 16 21 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 22 N -0.92 -26.66 10.87 55.49 0.60 -26.05 16 23 Si 0.91 21.83 29.56 -169.99 -5.03 16.80 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 27 C 0.15 3.16 7.04 -2.41 -0.02 3.14 16 28 C -0.17 -2.98 6.74 -89.22 -0.60 -3.58 16 29 H 0.10 1.67 8.12 -51.93 -0.42 1.24 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 33 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.15 0.48 8.06 -52.49 -0.42 0.05 16 35 H 0.15 0.77 6.52 -52.49 -0.34 0.43 16 36 H 0.40 3.64 6.50 -40.82 -0.27 3.37 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 39 H 0.09 2.40 6.51 -51.93 -0.34 2.06 16 40 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -34.42 360.46 -9.34 -43.77 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.97 Total: 1.49 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.77 Total: 2.10 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.43 Total: -56.31 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.59 Total: -13.28 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.42 -9.34 -43.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978648975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.845 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds