Wall clock time and date at job start Tue Mar 31 2020 11:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35426 * 116.99614 * 2 1 4 4 N 1.32232 * 119.80602 * 0.02562 * 3 2 1 5 5 C 1.31876 * 121.80439 * 179.97438 * 4 3 2 6 6 C 1.38364 * 121.18385 * 359.97438 * 5 4 3 7 7 C 1.38332 * 119.45734 * 359.74457 * 6 5 4 8 8 C 1.39989 * 118.35037 * 0.49545 * 7 6 5 9 9 C 1.47526 * 120.59707 * 179.77862 * 8 7 6 10 10 O 1.21592 * 119.99855 * 179.71958 * 9 8 7 11 11 N 1.34771 * 119.99885 * 359.72578 * 9 8 7 12 12 C 1.46505 * 119.99875 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47203 * 179.97438 * 12 11 9 14 14 H 1.09004 * 115.51602 * 330.41120 * 13 12 11 15 15 C 1.52997 * 117.44448 * 185.00000 * 13 12 11 16 16 H 1.08998 * 119.53736 * 4.10779 * 15 13 12 17 17 C 1.54384 * 118.12809 * 160.81017 * 15 13 12 18 18 N 1.48147 * 104.62345 * 87.18511 * 17 15 13 19 19 C 1.36937 * 127.83809 * 140.39531 * 18 17 15 20 20 H 1.08002 * 119.99238 * 195.59853 * 19 18 17 21 21 C 1.38810 * 119.99994 * 15.59663 * 19 18 17 22 22 N 1.31620 * 119.99862 * 9.10173 * 21 19 18 23 23 Si 1.86797 * 119.99935 * 189.09597 * 21 19 18 24 24 H 1.48500 * 109.47270 * 60.00035 * 23 21 19 25 25 H 1.48492 * 109.47152 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47148 * 300.00123 * 23 21 19 27 27 C 1.48148 * 104.31933 * 320.41763 * 18 17 15 28 28 C 1.52995 * 117.44490 * 115.75519 * 13 12 11 29 29 H 1.09002 * 119.54474 * 355.88287 * 28 13 12 30 30 H 1.08997 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47179 * 299.99918 * 1 2 3 32 32 H 1.09002 * 109.46998 * 59.99766 * 1 2 3 33 33 H 1.07995 * 119.41164 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.27019 * 180.02562 * 6 5 4 35 35 H 1.08000 * 120.82464 * 180.25338 * 7 6 5 36 36 H 0.96996 * 120.00130 * 359.97438 * 11 9 8 37 37 H 1.08995 * 109.47313 * 59.99447 * 12 11 9 38 38 H 1.09006 * 109.46783 * 299.99717 * 12 11 9 39 39 H 1.09001 * 110.40814 * 205.97275 * 17 15 13 40 40 H 1.09010 * 110.40399 * 328.39988 * 17 15 13 41 41 H 0.96999 * 119.99692 * 180.02562 * 22 21 19 42 42 H 1.09000 * 110.41069 * 280.79665 * 27 18 17 43 43 H 1.09009 * 110.50408 * 158.41480 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3198 2.3132 0.0005 5 6 1.8770 3.5084 0.0010 6 6 3.2526 3.6575 0.0016 7 6 4.0587 2.5334 0.0070 8 6 3.4450 1.2752 0.0011 9 6 4.2570 0.0436 0.0015 10 8 3.7125 -1.0436 0.0015 11 7 5.6024 0.1235 0.0020 12 6 6.4088 -1.0997 0.0019 13 6 7.8938 -0.7314 0.0020 14 1 8.1437 0.2119 -0.4836 15 6 8.9037 -1.8746 -0.1165 16 1 8.5468 -2.8939 -0.2638 17 6 10.3403 -1.5328 -0.5669 18 7 11.0524 -1.1864 0.6852 19 6 12.3349 -1.5104 1.0394 20 1 12.6505 -1.4183 2.0682 21 6 13.2291 -1.9572 0.0763 22 7 12.9059 -1.9007 -1.1984 23 14 14.8910 -2.6385 0.5893 24 1 14.6922 -3.8182 1.4691 25 1 15.6539 -3.0441 -0.6184 26 1 15.6483 -1.5943 1.3251 27 6 10.0620 -0.4103 1.4673 28 6 8.7202 -1.1345 1.2248 29 1 8.2266 -1.6025 2.0766 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.2485 4.3866 0.0010 34 1 3.6934 4.6435 0.0024 35 1 5.1349 2.6241 0.0116 36 1 6.0367 0.9908 0.0018 37 1 6.1801 -1.6855 -0.8883 38 1 6.1795 -1.6861 0.8917 39 1 10.8053 -2.3966 -1.0420 40 1 10.3328 -0.6816 -1.2478 41 1 13.5307 -2.2133 -1.8713 42 1 10.0109 0.6161 1.1041 43 1 10.3160 -0.4255 2.5273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978648975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:20 Heat of formation + Delta-G solvation = 7.298999 kcal Electronic energy + Delta-G solvation = -25368.449054 eV Core-core repulsion = 21608.305499 eV Total energy + Delta-G solvation = -3760.143555 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93588 -40.67534 -39.88823 -38.89952 -36.33591 -35.06926 -33.75178 -32.60734 -31.83224 -29.07702 -28.82190 -28.14219 -26.79501 -25.21483 -23.88051 -22.86157 -22.01019 -21.26945 -20.82637 -19.55850 -18.85083 -18.57998 -18.14976 -17.15682 -16.94165 -16.62274 -16.21232 -16.16407 -15.86271 -15.46522 -15.24863 -15.03644 -14.70342 -14.55727 -14.42551 -14.04399 -13.97619 -13.53548 -13.33291 -13.17071 -12.88040 -12.71276 -12.68169 -12.33526 -12.20393 -11.97761 -11.94996 -11.75356 -11.29073 -11.03786 -10.94131 -10.72254 -10.68562 -10.49926 -10.08693 -9.54094 -8.89579 -7.91060 -5.27068 -0.34672 0.24494 1.46613 1.49882 1.56320 1.85659 1.99937 2.10955 2.48303 2.73420 2.81213 3.25184 3.28850 3.61950 3.68011 3.73872 3.81852 3.86166 3.99665 4.17977 4.26342 4.28978 4.39383 4.39732 4.42973 4.49081 4.58258 4.67056 4.71073 4.75537 4.90498 4.95620 5.04062 5.09525 5.20348 5.35670 5.41213 5.45006 5.46258 5.54498 5.67586 6.19108 6.20117 6.50175 6.75018 7.01985 7.20284 7.69474 8.47670 9.22501 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032747 B = 0.002168 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.823659 B =12911.506347 C =13395.972890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.347 3.653 4 N -0.562 5.562 5 C 0.163 3.837 6 C -0.206 4.206 7 C -0.003 4.003 8 C -0.235 4.235 9 C 0.560 3.440 10 O -0.566 6.566 11 N -0.709 5.709 12 C 0.165 3.835 13 C -0.107 4.107 14 H 0.114 0.886 15 C -0.178 4.178 16 H 0.111 0.889 17 C 0.189 3.811 18 N -0.621 5.621 19 C -0.241 4.241 20 H 0.080 0.920 21 C -0.063 4.063 22 N -0.947 5.947 23 Si 0.979 3.021 24 H -0.279 1.279 25 H -0.294 1.294 26 H -0.274 1.274 27 C 0.149 3.851 28 C -0.161 4.161 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.201 0.799 34 H 0.184 0.816 35 H 0.173 0.827 36 H 0.414 0.586 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.005 0.995 41 H 0.250 0.750 42 H 0.031 0.969 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.955 13.539 2.531 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.209 6.209 3 C 0.167 3.833 4 N -0.286 5.286 5 C 0.007 3.993 6 C -0.226 4.226 7 C -0.029 4.029 8 C -0.242 4.242 9 C 0.348 3.652 10 O -0.446 6.446 11 N -0.362 5.362 12 C 0.042 3.958 13 C -0.126 4.126 14 H 0.132 0.868 15 C -0.198 4.198 16 H 0.129 0.871 17 C 0.064 3.936 18 N -0.345 5.345 19 C -0.370 4.370 20 H 0.098 0.902 21 C -0.257 4.257 22 N -0.595 5.595 23 Si 0.807 3.193 24 H -0.205 1.205 25 H -0.220 1.220 26 H -0.199 1.199 27 C 0.024 3.976 28 C -0.180 4.180 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.218 0.782 34 H 0.202 0.798 35 H 0.190 0.810 36 H 0.252 0.748 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.023 0.977 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.876 12.290 2.467 27.856 hybrid contribution 1.871 -0.212 -0.083 1.885 sum -23.005 12.078 2.384 26.092 Atomic orbital electron populations 1.23102 0.76098 1.04376 1.02590 1.86492 1.24057 1.24370 1.85982 1.20128 0.88691 0.85446 0.89006 1.67530 1.40704 0.99220 1.21184 1.23445 0.94451 0.93676 0.87757 1.22408 0.94199 1.01139 1.04821 1.22075 1.02401 0.89477 0.88956 1.20035 0.91342 0.95419 1.17355 1.18139 0.82301 0.88595 0.76191 1.90807 1.72535 1.30264 1.50975 1.45706 1.05032 1.10542 1.74920 1.20663 0.86662 0.86458 1.02051 1.22398 0.90393 0.99288 1.00529 0.86801 1.23923 0.95946 0.97284 1.02640 0.87111 1.20793 0.87220 0.97598 0.87997 1.45521 1.10309 1.60889 1.17813 1.19342 0.86262 1.37927 0.93461 0.90195 1.25735 1.01791 1.02973 0.95208 1.70083 1.37132 1.52418 0.99857 0.85146 0.79070 0.78489 0.76585 1.20464 1.22015 1.19925 1.21300 0.87261 0.93281 0.95761 1.23935 0.98082 1.04070 0.91927 0.86008 0.87070 0.91830 0.91862 0.78219 0.79839 0.80955 0.74819 0.91417 0.91530 0.93040 0.97738 0.94135 0.95077 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.38 113.37 1.18 1.77 16 2 O -0.30 -8.28 8.58 -66.40 -0.57 -8.85 16 3 C 0.35 8.35 7.51 85.13 0.64 8.99 16 4 N -0.56 -10.62 9.21 -308.00 -2.84 -13.45 16 5 C 0.16 1.76 11.17 84.72 0.95 2.70 16 6 C -0.21 -1.68 10.09 22.32 0.23 -1.46 16 7 C 0.00 -0.04 9.64 22.72 0.22 0.18 16 8 C -0.24 -5.14 5.90 -19.91 -0.12 -5.26 16 9 C 0.56 15.12 7.77 86.69 0.67 15.79 16 10 O -0.57 -20.26 15.19 16.81 0.26 -20.01 16 11 N -0.71 -15.43 5.51 -466.28 -2.57 -18.00 16 12 C 0.17 4.20 5.95 86.38 0.51 4.72 16 13 C -0.11 -2.98 5.39 -10.80 -0.06 -3.04 16 14 H 0.11 2.99 8.04 -2.38 -0.02 2.97 16 15 C -0.18 -6.51 6.85 -9.89 -0.07 -6.58 16 16 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 17 C 0.19 9.20 5.70 86.53 0.49 9.69 16 18 N -0.62 -31.77 3.38 -688.12 -2.33 -34.09 16 19 C -0.24 -13.48 10.35 84.03 0.87 -12.61 16 20 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 21 C -0.06 -3.59 5.40 84.86 0.46 -3.14 16 22 N -0.95 -56.81 10.87 21.65 0.24 -56.57 16 23 Si 0.98 45.39 29.56 68.60 2.03 47.42 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 25 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 C 0.15 5.91 7.04 86.54 0.61 6.52 16 28 C -0.16 -5.24 6.74 -9.89 -0.07 -5.31 16 29 H 0.12 3.59 8.12 -2.39 -0.02 3.57 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 32 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 33 H 0.20 0.54 8.06 -2.91 -0.02 0.52 16 34 H 0.18 0.10 8.06 -2.91 -0.02 0.07 16 35 H 0.17 1.09 6.52 -2.91 -0.02 1.07 16 36 H 0.41 6.25 6.50 -92.71 -0.60 5.65 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 38 H 0.07 1.79 7.94 -2.38 -0.02 1.77 16 39 H 0.05 2.87 6.51 -2.39 -0.02 2.85 16 40 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 41 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -78.64 360.46 1.16 -77.48 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.43 Total: 13.11 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 6.51 Total: 12.98 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -7.49 Total: -122.12 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.31 Total: -28.86 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -78.64 1.16 -77.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978648975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.774 kcal (2) G-P(sol) polarization free energy of solvation -78.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds