Wall clock time and date at job start Tue Mar 31 2020 11:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35650 * 116.99808 * 2 1 4 4 C 1.39351 * 120.54035 * 359.71829 * 3 2 1 5 5 C 1.38300 * 118.43756 * 179.80407 * 4 3 2 6 6 C 1.38765 * 119.44408 * 0.47691 * 5 4 3 7 7 N 1.31376 * 121.06810 * 359.76559 * 6 5 4 8 8 C 1.32857 * 121.69787 * 359.97438 * 7 6 5 9 9 C 1.47828 * 119.78531 * 179.97438 * 8 7 6 10 10 O 1.21555 * 119.99978 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99817 * 0.02630 * 9 8 7 12 12 C 1.46500 * 120.00018 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47002 * 179.97438 * 12 11 9 14 14 H 1.08999 * 115.52174 * 29.58077 * 13 12 11 15 15 C 1.53004 * 117.44286 * 244.23117 * 13 12 11 16 16 H 1.09004 * 119.53769 * 4.12910 * 15 13 12 17 17 C 1.57688 * 116.10875 * 161.63790 * 15 13 12 18 18 N 1.48145 * 104.67314 * 87.31495 * 17 15 13 19 19 C 1.36939 * 127.83811 * 139.77250 * 18 17 15 20 20 H 1.07999 * 120.00313 * 344.33607 * 19 18 17 21 21 C 1.38817 * 120.00082 * 164.33926 * 19 18 17 22 22 N 1.31623 * 119.99738 * 350.56942 * 21 19 18 23 23 Si 1.86798 * 119.99995 * 170.57117 * 21 19 18 24 24 H 1.48496 * 109.47351 * 59.99915 * 23 21 19 25 25 H 1.48500 * 109.46896 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47192 * 299.99460 * 23 21 19 27 27 C 1.48143 * 104.32520 * 319.77281 * 18 17 15 28 28 C 1.53001 * 117.44043 * 174.99620 * 13 12 11 29 29 H 1.09000 * 119.53969 * 355.88272 * 28 13 12 30 30 H 1.09004 * 109.47072 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47122 * 60.00199 * 1 2 3 32 32 H 1.09001 * 109.47476 * 299.99743 * 1 2 3 33 33 H 1.07995 * 120.77819 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.27190 * 180.24438 * 5 4 3 35 35 H 1.08003 * 119.46347 * 179.75109 * 6 5 4 36 36 H 0.97006 * 120.00351 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.46506 * 299.99715 * 12 11 9 38 38 H 1.08994 * 109.47342 * 59.99510 * 12 11 9 39 39 H 1.08997 * 110.92635 * 328.23409 * 17 15 13 40 40 H 1.09005 * 109.93431 * 205.89416 * 17 15 13 41 41 H 0.96999 * 119.99906 * 180.02562 * 22 21 19 42 42 H 1.09004 * 110.40688 * 280.80046 * 27 18 17 43 43 H 1.08998 * 110.41105 * 158.36940 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 -0.0059 5 6 1.9695 3.5929 -0.0015 6 6 3.3571 3.6012 -0.0015 7 7 4.0418 2.4800 -0.0010 8 6 3.4409 1.2951 0.0000 9 6 4.2531 0.0599 0.0000 10 8 3.7074 -1.0263 0.0005 11 7 5.5986 0.1381 -0.0005 12 6 6.4035 -1.0860 -0.0011 13 6 7.8889 -0.7196 -0.0023 14 1 8.1404 0.2234 0.4831 15 6 8.7140 -1.1239 -1.2258 16 1 8.2191 -1.5912 -2.0771 17 6 10.0857 -0.3701 -1.4176 18 7 11.0610 -1.1596 -0.6302 19 6 12.3509 -1.4758 -0.9643 20 1 12.6868 -1.3658 -1.9848 21 6 13.2266 -1.9379 0.0086 22 7 12.8807 -1.8976 1.2780 23 14 14.8958 -2.6166 -0.4836 24 1 15.6688 -1.5648 -1.1916 25 1 15.6359 -3.0403 0.7321 26 1 14.7100 -3.7840 -1.3825 27 6 10.3245 -1.5295 0.6008 28 6 8.8975 -1.8640 0.1154 29 1 8.5394 -2.8829 0.2631 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 0.2174 2.3527 -0.0101 34 1 1.4192 4.5222 -0.0019 35 1 3.8827 4.5447 -0.0021 36 1 6.0341 1.0049 -0.0012 37 1 6.1741 -1.6720 0.8889 38 1 6.1734 -1.6717 -0.8910 39 1 10.0263 0.6494 -1.0368 40 1 10.3631 -0.3657 -2.4718 41 1 13.4928 -2.2201 1.9579 42 1 10.3023 -0.6910 1.2969 43 1 10.7808 -2.4015 1.0693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979006977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:54 Heat of formation + Delta-G solvation = 32.079619 kcal Electronic energy + Delta-G solvation = -25351.682863 eV Core-core repulsion = 21592.613876 eV Total energy + Delta-G solvation = -3759.068987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21698 -39.29378 -38.54742 -38.35346 -34.84412 -33.35080 -32.67503 -31.22769 -30.70211 -27.97546 -27.36227 -26.90334 -25.29308 -24.13202 -23.20101 -21.09751 -20.83996 -19.95469 -19.20887 -18.61741 -17.84115 -17.43894 -16.74637 -16.34693 -15.68471 -15.62267 -15.17091 -14.82152 -14.67060 -14.32693 -14.06420 -14.02395 -13.64623 -13.39880 -12.96883 -12.89069 -12.66501 -12.56046 -11.91967 -11.88756 -11.78418 -11.19407 -11.02622 -10.78656 -10.57299 -10.41141 -10.25614 -10.21003 -10.10421 -9.86171 -9.68709 -9.31690 -9.07111 -8.93322 -8.72763 -8.57283 -6.82542 -5.76234 -3.10186 0.32811 0.82158 2.66298 2.75722 3.09534 3.41371 3.45845 3.47186 3.60292 3.94726 4.15358 4.23555 4.33340 4.49720 4.55207 4.68096 4.71519 4.79071 5.00615 5.05996 5.13347 5.37520 5.44551 5.48365 5.51469 5.52769 5.61673 5.85664 5.87529 5.93788 6.00771 6.04485 6.29962 6.48584 6.62488 6.73369 6.78623 6.79474 6.97708 7.33420 7.41466 7.57447 7.67902 7.75611 8.25006 8.27216 9.14746 9.77643 10.55448 11.38165 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032496 B = 0.002177 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.445438 B =12859.183533 C =13350.282498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.272 6.272 3 C 0.136 3.864 4 C -0.177 4.177 5 C -0.108 4.108 6 C 0.059 3.941 7 N -0.418 5.418 8 C 0.046 3.954 9 C 0.568 3.432 10 O -0.521 6.521 11 N -0.706 5.706 12 C 0.155 3.845 13 C -0.152 4.152 14 H 0.104 0.896 15 C -0.171 4.171 16 H 0.107 0.893 17 C 0.156 3.844 18 N -0.595 5.595 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.184 3.816 28 C -0.162 4.162 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.167 0.833 36 H 0.411 0.589 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.027 0.973 40 H 0.048 0.952 41 H 0.255 0.745 42 H 0.024 0.976 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.991 10.683 -1.780 29.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.182 6.182 3 C 0.085 3.915 4 C -0.203 4.203 5 C -0.128 4.128 6 C -0.102 4.102 7 N -0.130 5.130 8 C -0.093 4.093 9 C 0.352 3.648 10 O -0.396 6.396 11 N -0.357 5.357 12 C 0.031 3.969 13 C -0.171 4.171 14 H 0.122 0.878 15 C -0.191 4.191 16 H 0.125 0.875 17 C 0.029 3.971 18 N -0.318 5.318 19 C -0.355 4.355 20 H 0.093 0.907 21 C -0.203 4.203 22 N -0.562 5.562 23 Si 0.743 3.257 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.058 3.942 28 C -0.183 4.183 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.184 0.816 36 H 0.247 0.753 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -26.092 9.539 -1.679 27.832 hybrid contribution -0.272 0.337 -0.192 0.473 sum -26.364 9.876 -1.871 28.215 Atomic orbital electron populations 1.23232 0.78494 1.04800 1.01171 1.86439 1.20934 1.24487 1.86294 1.20070 0.92350 0.85803 0.93259 1.21761 1.01107 0.91831 1.05645 1.22222 0.95815 0.98435 0.96367 1.22740 0.91374 0.96444 0.99662 1.67637 1.39927 0.97403 1.08049 1.20741 0.88588 0.92970 1.06995 1.17585 0.82310 0.87209 0.77655 1.90834 1.71795 1.27550 1.49411 1.45853 1.05355 1.10904 1.73628 1.20910 0.87989 0.85851 1.02101 1.22548 0.90400 1.00705 1.03482 0.87820 1.24704 0.98601 1.04519 0.91321 0.87534 1.21718 0.86742 0.92822 0.95818 1.45142 1.09459 1.58731 1.18456 1.18949 0.84719 1.38290 0.93535 0.90658 1.24899 0.98143 1.02184 0.95106 1.69895 1.36448 1.50991 0.98855 0.86190 0.83387 0.79015 0.77106 1.21011 1.21566 1.21090 1.21075 0.84454 0.99927 0.88709 1.24175 0.97498 0.95374 1.01253 0.88038 0.87542 0.92488 0.92484 0.83647 0.83905 0.81620 0.75335 0.91036 0.91373 0.95488 0.93374 0.93526 0.95827 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.83 101.05 0.99 1.11 16 2 O -0.27 -3.17 8.56 -40.60 -0.35 -3.52 16 3 C 0.14 1.50 6.71 -38.55 -0.26 1.24 16 4 C -0.18 -1.28 9.13 -39.14 -0.36 -1.64 16 5 C -0.11 -0.66 10.10 -39.36 -0.40 -1.05 16 6 C 0.06 0.46 11.17 -17.55 -0.20 0.26 16 7 N -0.42 -4.68 9.54 -9.71 -0.09 -4.77 16 8 C 0.05 0.59 6.76 -82.89 -0.56 0.03 16 9 C 0.57 8.64 7.80 -12.34 -0.10 8.54 16 10 O -0.52 -9.35 15.14 -16.63 -0.25 -9.60 16 11 N -0.71 -9.92 5.54 -61.26 -0.34 -10.26 16 12 C 0.15 2.30 5.95 -4.04 -0.02 2.27 16 13 C -0.15 -2.49 5.34 -90.62 -0.48 -2.97 16 14 H 0.10 1.70 8.04 -51.93 -0.42 1.28 16 15 C -0.17 -3.13 7.03 -87.38 -0.61 -3.74 16 16 H 0.11 1.80 8.12 -51.93 -0.42 1.38 16 17 C 0.16 3.33 7.10 -0.57 0.00 3.32 16 18 N -0.59 -15.51 3.38 -166.73 -0.56 -16.07 16 19 C -0.23 -6.41 10.35 -15.06 -0.16 -6.56 16 20 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 21 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 22 N -0.92 -27.11 10.88 55.49 0.60 -26.51 16 23 Si 0.91 22.16 29.56 -169.99 -5.03 17.14 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.18 4.50 5.70 -2.41 -0.01 4.48 16 28 C -0.16 -3.17 6.77 -89.22 -0.60 -3.77 16 29 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 30 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.25 7.68 -51.93 -0.40 -0.15 16 32 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 33 H 0.15 0.62 6.46 -52.49 -0.34 0.28 16 34 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 35 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.41 5.27 7.73 -40.82 -0.32 4.95 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.09 2.42 6.53 -51.93 -0.34 2.08 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -34.56 360.39 -9.43 -43.99 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.97 Total: 2.92 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -2.87 Total: 1.26 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.39 Total: -57.61 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.60 Total: -13.12 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.56 -9.43 -43.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979006977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.068 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds