Wall clock time and date at job start Tue Mar 31 2020 11:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35650 * 116.99808 * 2 1 4 4 C 1.39351 * 120.54035 * 359.71829 * 3 2 1 5 5 C 1.38300 * 118.43756 * 179.80407 * 4 3 2 6 6 C 1.38765 * 119.44408 * 0.47691 * 5 4 3 7 7 N 1.31376 * 121.06810 * 359.76559 * 6 5 4 8 8 C 1.32857 * 121.69787 * 359.97438 * 7 6 5 9 9 C 1.47828 * 119.78531 * 179.97438 * 8 7 6 10 10 O 1.21555 * 119.99978 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99817 * 0.02630 * 9 8 7 12 12 C 1.46500 * 120.00018 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47002 * 179.97438 * 12 11 9 14 14 H 1.08999 * 115.52174 * 29.58077 * 13 12 11 15 15 C 1.53004 * 117.44286 * 244.23117 * 13 12 11 16 16 H 1.09004 * 119.53769 * 4.12910 * 15 13 12 17 17 C 1.57688 * 116.10875 * 161.63790 * 15 13 12 18 18 N 1.48145 * 104.67314 * 87.31495 * 17 15 13 19 19 C 1.36939 * 127.83811 * 139.77250 * 18 17 15 20 20 H 1.07999 * 120.00313 * 344.33607 * 19 18 17 21 21 C 1.38817 * 120.00082 * 164.33926 * 19 18 17 22 22 N 1.31623 * 119.99738 * 350.56942 * 21 19 18 23 23 Si 1.86798 * 119.99995 * 170.57117 * 21 19 18 24 24 H 1.48496 * 109.47351 * 59.99915 * 23 21 19 25 25 H 1.48500 * 109.46896 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47192 * 299.99460 * 23 21 19 27 27 C 1.48143 * 104.32520 * 319.77281 * 18 17 15 28 28 C 1.53001 * 117.44043 * 174.99620 * 13 12 11 29 29 H 1.09000 * 119.53969 * 355.88272 * 28 13 12 30 30 H 1.09004 * 109.47072 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47122 * 60.00199 * 1 2 3 32 32 H 1.09001 * 109.47476 * 299.99743 * 1 2 3 33 33 H 1.07995 * 120.77819 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.27190 * 180.24438 * 5 4 3 35 35 H 1.08003 * 119.46347 * 179.75109 * 6 5 4 36 36 H 0.97006 * 120.00351 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.46506 * 299.99715 * 12 11 9 38 38 H 1.08994 * 109.47342 * 59.99510 * 12 11 9 39 39 H 1.08997 * 110.92635 * 328.23409 * 17 15 13 40 40 H 1.09005 * 109.93431 * 205.89416 * 17 15 13 41 41 H 0.96999 * 119.99906 * 180.02562 * 22 21 19 42 42 H 1.09004 * 110.40688 * 280.80046 * 27 18 17 43 43 H 1.08998 * 110.41105 * 158.36940 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 -0.0059 5 6 1.9695 3.5929 -0.0015 6 6 3.3571 3.6012 -0.0015 7 7 4.0418 2.4800 -0.0010 8 6 3.4409 1.2951 0.0000 9 6 4.2531 0.0599 0.0000 10 8 3.7074 -1.0263 0.0005 11 7 5.5986 0.1381 -0.0005 12 6 6.4035 -1.0860 -0.0011 13 6 7.8889 -0.7196 -0.0023 14 1 8.1404 0.2234 0.4831 15 6 8.7140 -1.1239 -1.2258 16 1 8.2191 -1.5912 -2.0771 17 6 10.0857 -0.3701 -1.4176 18 7 11.0610 -1.1596 -0.6302 19 6 12.3509 -1.4758 -0.9643 20 1 12.6868 -1.3658 -1.9848 21 6 13.2266 -1.9379 0.0086 22 7 12.8807 -1.8976 1.2780 23 14 14.8958 -2.6166 -0.4836 24 1 15.6688 -1.5648 -1.1916 25 1 15.6359 -3.0403 0.7321 26 1 14.7100 -3.7840 -1.3825 27 6 10.3245 -1.5295 0.6008 28 6 8.8975 -1.8640 0.1154 29 1 8.5394 -2.8829 0.2631 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 0.2174 2.3527 -0.0101 34 1 1.4192 4.5222 -0.0019 35 1 3.8827 4.5447 -0.0021 36 1 6.0341 1.0049 -0.0012 37 1 6.1741 -1.6720 0.8889 38 1 6.1734 -1.6717 -0.8910 39 1 10.0263 0.6494 -1.0368 40 1 10.3631 -0.3657 -2.4718 41 1 13.4928 -2.2201 1.9579 42 1 10.3023 -0.6910 1.2969 43 1 10.7808 -2.4015 1.0693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979006977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:53 Heat of formation + Delta-G solvation = 8.987210 kcal Electronic energy + Delta-G solvation = -25352.684225 eV Core-core repulsion = 21592.613876 eV Total energy + Delta-G solvation = -3760.070349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94244 -40.58535 -39.80904 -39.15635 -36.32206 -34.98056 -33.44351 -32.63028 -31.83906 -29.08725 -28.68693 -28.27011 -26.88204 -25.16770 -23.81639 -22.84080 -21.97681 -21.36512 -20.85429 -19.39528 -18.82980 -18.64969 -18.15597 -17.03771 -16.94884 -16.65165 -16.39671 -16.20364 -15.81839 -15.35612 -15.22132 -15.01100 -14.72192 -14.61221 -14.52786 -14.28865 -13.96582 -13.43526 -13.36176 -13.17024 -12.86527 -12.68091 -12.45069 -12.40403 -12.32713 -11.97734 -11.90057 -11.75057 -11.38183 -10.94947 -10.83075 -10.73465 -10.68340 -10.50704 -10.07023 -9.48954 -8.90644 -7.91249 -5.27651 -0.36141 0.23016 1.46327 1.50112 1.56586 1.74984 2.02520 2.21062 2.48291 2.74767 2.83748 3.20459 3.27266 3.57956 3.63399 3.70951 3.77050 3.87296 4.01517 4.16677 4.22181 4.26510 4.29694 4.32734 4.36030 4.48267 4.57551 4.65367 4.70963 4.72321 4.91357 4.92640 5.01504 5.02371 5.20487 5.34132 5.43035 5.44583 5.45997 5.52615 5.66382 6.18003 6.21264 6.44634 6.81904 7.01103 7.19204 7.68496 8.47512 9.22576 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032496 B = 0.002177 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.445438 B =12859.183533 C =13350.282498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.310 6.310 3 C 0.123 3.877 4 C -0.172 4.172 5 C -0.087 4.087 6 C 0.053 3.947 7 N -0.441 5.441 8 C 0.003 3.997 9 C 0.564 3.436 10 O -0.559 6.559 11 N -0.702 5.702 12 C 0.164 3.836 13 C -0.116 4.116 14 H 0.106 0.894 15 C -0.158 4.158 16 H 0.129 0.871 17 C 0.149 3.851 18 N -0.620 5.620 19 C -0.242 4.242 20 H 0.081 0.919 21 C -0.064 4.064 22 N -0.948 5.948 23 Si 0.982 3.018 24 H -0.273 1.273 25 H -0.293 1.293 26 H -0.277 1.277 27 C 0.190 3.810 28 C -0.175 4.175 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.179 0.821 34 H 0.189 0.811 35 H 0.196 0.804 36 H 0.416 0.584 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.056 0.944 41 H 0.250 0.750 42 H 0.002 0.998 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.342 12.761 -2.894 32.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.072 3.928 4 C -0.198 4.198 5 C -0.106 4.106 6 C -0.110 4.110 7 N -0.153 5.153 8 C -0.134 4.134 9 C 0.351 3.649 10 O -0.438 6.438 11 N -0.354 5.354 12 C 0.041 3.959 13 C -0.135 4.135 14 H 0.124 0.876 15 C -0.177 4.177 16 H 0.147 0.853 17 C 0.024 3.976 18 N -0.344 5.344 19 C -0.371 4.371 20 H 0.099 0.901 21 C -0.258 4.258 22 N -0.595 5.595 23 Si 0.809 3.191 24 H -0.199 1.199 25 H -0.219 1.219 26 H -0.203 1.203 27 C 0.064 3.936 28 C -0.195 4.195 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.196 0.804 34 H 0.206 0.794 35 H 0.212 0.788 36 H 0.254 0.746 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.020 0.980 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -28.463 11.633 -2.818 30.877 hybrid contribution 0.335 -0.144 0.152 0.396 sum -28.127 11.488 -2.666 30.500 Atomic orbital electron populations 1.23521 0.76138 1.05847 1.03001 1.86379 1.23590 1.25585 1.86473 1.20290 0.92105 0.86910 0.93515 1.22183 1.02628 0.90760 1.04218 1.22742 0.95235 0.99723 0.92924 1.23407 0.92740 0.96369 0.98456 1.67555 1.40970 0.97760 1.08993 1.20405 0.89297 0.92539 1.11125 1.18060 0.82395 0.87941 0.76538 1.90790 1.72442 1.29206 1.51326 1.45765 1.05310 1.10726 1.73557 1.20716 0.86796 0.86333 1.02095 1.22409 0.90618 0.99203 1.01277 0.87608 1.24649 0.97613 1.03567 0.91890 0.85292 1.21869 0.87332 0.92747 0.95660 1.45454 1.09745 1.59824 1.19376 1.19354 0.85959 1.37874 0.93899 0.90127 1.25775 1.01973 1.02924 0.95099 1.70097 1.37523 1.52137 0.99789 0.85111 0.78890 0.78484 0.76584 1.19918 1.21948 1.20339 1.20805 0.87074 0.97490 0.88194 1.23879 0.95933 0.97122 1.02597 0.86916 0.87123 0.90535 0.90583 0.80362 0.79424 0.78751 0.74631 0.91287 0.91246 0.95197 0.92537 0.94100 0.98019 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.83 113.37 1.11 1.21 16 2 O -0.31 -7.14 8.56 -68.66 -0.59 -7.73 16 3 C 0.12 2.59 6.71 22.94 0.15 2.74 16 4 C -0.17 -1.92 9.13 22.55 0.21 -1.71 16 5 C -0.09 -0.67 10.10 22.41 0.23 -0.44 16 6 C 0.05 0.66 11.17 84.89 0.95 1.61 16 7 N -0.44 -9.35 9.54 -184.63 -1.76 -11.11 16 8 C 0.00 0.07 6.76 41.93 0.28 0.35 16 9 C 0.56 17.51 7.80 86.78 0.68 18.19 16 10 O -0.56 -20.77 15.14 17.10 0.26 -20.51 16 11 N -0.70 -19.69 5.54 -466.00 -2.58 -22.27 16 12 C 0.16 4.80 5.95 86.38 0.51 5.31 16 13 C -0.12 -3.71 5.34 -10.79 -0.06 -3.76 16 14 H 0.11 3.40 8.04 -2.39 -0.02 3.38 16 15 C -0.16 -5.57 7.03 -8.70 -0.06 -5.63 16 16 H 0.13 4.05 8.12 -2.39 -0.02 4.03 16 17 C 0.15 6.33 7.10 87.72 0.62 6.96 16 18 N -0.62 -32.96 3.38 -681.42 -2.30 -35.27 16 19 C -0.24 -13.89 10.35 84.03 0.87 -13.02 16 20 H 0.08 4.40 7.85 -2.91 -0.02 4.38 16 21 C -0.06 -3.71 5.40 84.86 0.46 -3.25 16 22 N -0.95 -58.09 10.88 21.65 0.24 -57.85 16 23 Si 0.98 46.25 29.56 68.60 2.03 48.27 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 27 C 0.19 9.64 5.70 86.54 0.49 10.13 16 28 C -0.17 -6.85 6.77 -9.89 -0.07 -6.91 16 29 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 30 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.08 0.48 7.68 -2.39 -0.02 0.46 16 32 H 0.08 0.49 7.71 -2.39 -0.02 0.47 16 33 H 0.18 0.69 6.46 -2.91 -0.02 0.67 16 34 H 0.19 -0.22 8.06 -2.91 -0.02 -0.25 16 35 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.42 10.55 7.73 -92.70 -0.72 9.84 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 2.06 7.94 -2.39 -0.02 2.04 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 41 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 43 H 0.05 3.04 6.53 -2.39 -0.02 3.03 16 Total: -1.00 -79.35 360.39 1.99 -77.37 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.32 Total: 17.34 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 6.38 Total: 11.77 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.41 Total: -126.50 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.33 Total: -28.24 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -79.35 1.99 -77.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979006977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.353 kcal (2) G-P(sol) polarization free energy of solvation -79.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds